Wall clock time and date at job start Tue Mar 31 2020 23:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42894 * 113.99896 * 2 1 4 4 C 1.47198 * 109.47156 * 179.97438 * 3 2 1 5 5 C 3.40060 * 161.18711 * 0.02562 * 2 1 3 6 6 C 4.78779 * 168.18424 * 0.02562 * 2 1 3 7 7 N 1.46899 * 109.46930 * 194.87264 * 6 5 4 8 8 C 1.46847 * 110.99862 * 66.05089 * 7 6 5 9 9 C 1.53044 * 109.51335 * 174.15436 * 8 7 6 10 10 C 1.53119 * 109.27589 * 59.18419 * 9 8 7 11 11 C 1.53120 * 109.16202 * 302.34077 * 10 9 8 12 12 H 1.08996 * 109.50004 * 297.72216 * 11 10 9 13 13 C 1.53001 * 109.50234 * 177.59979 * 11 10 9 14 14 N 1.46493 * 109.47311 * 65.00186 * 13 11 10 15 15 C 1.34771 * 120.00523 * 179.97438 * 14 13 11 16 16 O 1.21292 * 119.99606 * 0.02562 * 15 14 13 17 17 C 1.50693 * 120.00812 * 180.02562 * 15 14 13 18 18 S 1.80993 * 109.47656 * 180.02562 * 17 15 14 19 19 C 1.76203 * 100.00335 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99667 * 0.02562 * 19 18 17 21 21 C 1.38800 * 120.00266 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99684 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00077 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47204 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47141 * 120.00037 * 23 21 19 26 26 H 1.48497 * 109.47414 * 240.00407 * 23 21 19 27 27 C 1.46847 * 110.99299 * 301.84248 * 7 6 5 28 28 H 1.09004 * 109.47345 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47297 * 300.00336 * 1 2 3 30 30 H 1.08999 * 109.47540 * 60.00337 * 1 2 3 31 31 H 1.08996 * 109.47756 * 59.99546 * 3 2 1 32 32 H 1.09006 * 109.47566 * 299.99601 * 3 2 1 33 33 H 1.09004 * 109.47171 * 74.87674 * 6 5 4 34 34 H 1.08996 * 109.47453 * 314.87961 * 6 5 4 35 35 H 1.09002 * 109.46448 * 54.14158 * 8 7 6 36 36 H 1.08994 * 109.45958 * 294.16523 * 8 7 6 37 37 H 1.09000 * 109.49745 * 179.12223 * 9 8 7 38 38 H 1.08996 * 109.50070 * 299.23917 * 9 8 7 39 39 H 1.08993 * 109.52284 * 62.25342 * 10 9 8 40 40 H 1.09003 * 109.51690 * 182.37761 * 10 9 8 41 41 H 1.09001 * 109.46661 * 185.00458 * 13 11 10 42 42 H 1.09003 * 109.46994 * 305.00259 * 13 11 10 43 43 H 0.97009 * 120.00059 * 0.02562 * 14 13 11 44 44 H 1.09004 * 109.47062 * 300.00432 * 17 15 14 45 45 H 1.09006 * 109.47065 * 59.99369 * 17 15 14 46 46 H 0.96998 * 119.99542 * 180.02562 * 22 21 19 47 47 H 1.09005 * 109.46836 * 65.83946 * 27 7 6 48 48 H 1.08994 * 109.46332 * 305.85962 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.4775 1.1892 0.0006 5 6 4.6479 1.0966 0.0005 6 6 6.1153 0.9804 0.0004 7 7 6.7091 2.2761 0.3559 8 6 6.3876 2.6398 1.7418 9 6 7.1392 3.9175 2.1225 10 6 6.7318 5.0461 1.1713 11 6 7.0324 4.6224 -0.2691 12 1 8.1041 4.4612 -0.3848 13 6 6.5732 5.7202 -1.2308 14 7 7.3703 6.9289 -1.0086 15 6 7.1413 8.0326 -1.7474 16 8 6.2748 8.0251 -2.5961 17 6 7.9616 9.2759 -1.5192 18 16 7.4184 10.5746 -2.6567 19 6 8.5132 11.8722 -2.1852 20 1 9.2366 11.7097 -1.3999 21 6 8.4467 13.1028 -2.8237 22 7 7.5653 13.3006 -3.7812 23 14 9.6068 14.4786 -2.3233 24 1 10.4942 14.0050 -1.2308 25 1 10.4314 14.8801 -3.4913 26 1 8.8176 15.6442 -1.8503 27 6 6.2839 3.3243 -0.5805 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 6.4563 0.6844 -0.9917 34 1 6.4203 0.2288 0.7286 35 1 6.6860 1.8306 2.4083 36 1 5.3147 2.8086 1.8333 37 1 6.8883 4.1959 3.1461 38 1 8.2126 3.7452 2.0443 39 1 5.6655 5.2449 1.2776 40 1 7.2962 5.9469 1.4122 41 1 6.7054 5.3815 -2.2584 42 1 5.5206 5.9414 -1.0538 43 1 8.0636 6.9348 -0.3300 44 1 7.8296 9.6148 -0.4916 45 1 9.0142 9.0543 -1.6961 46 1 7.5191 14.1605 -4.2276 47 1 5.2114 3.4900 -0.4779 48 1 6.5071 3.0122 -1.6007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661702793.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:46 Heat of formation + Delta-G solvation = -64.439899 kcal Electronic energy + Delta-G solvation = -25909.647085 eV Core-core repulsion = 22090.810279 eV Total energy + Delta-G solvation = -3818.836806 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.93237 -40.07587 -39.00484 -36.84166 -35.03252 -34.58011 -33.42926 -32.57768 -30.70567 -29.61710 -27.72787 -27.61292 -26.62856 -26.26275 -23.95873 -22.70410 -21.76093 -20.74400 -19.81830 -18.50425 -17.85128 -17.50268 -17.33821 -16.98461 -16.87882 -16.80988 -16.57959 -16.22032 -16.04387 -15.72527 -15.44764 -15.13597 -14.74661 -14.51397 -14.37560 -14.18520 -13.89433 -13.82196 -13.56385 -13.44030 -13.15481 -13.05245 -12.93277 -12.90050 -12.58809 -12.57283 -12.12148 -11.76360 -11.70857 -11.56368 -11.37523 -11.20096 -11.15559 -11.14679 -10.94547 -10.50163 -10.26663 -10.11992 -9.59084 -8.66429 -8.34482 -6.12528 1.26184 1.28612 1.42007 1.47821 1.56936 1.59117 1.61717 2.25110 2.29222 2.79884 2.93106 2.99914 3.32784 3.45741 3.68161 3.74852 3.87934 3.99231 4.15228 4.16911 4.24615 4.30261 4.31937 4.38040 4.44950 4.47624 4.51606 4.51937 4.56359 4.57956 4.58432 4.68569 4.75818 4.80808 4.82091 4.88572 4.94799 5.07936 5.16745 5.24434 5.38873 5.42728 5.49464 5.93980 5.99158 6.04058 6.20556 6.46553 6.50947 7.07052 7.24818 8.75072 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017470 B = 0.001698 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.383385 B =16487.748934 C =17545.746493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.415 6.415 3 C 0.172 3.828 4 C -0.212 4.212 5 C -0.189 4.189 6 C 0.160 3.840 7 N -0.520 5.520 8 C 0.051 3.949 9 C -0.111 4.111 10 C -0.119 4.119 11 C -0.080 4.080 12 H 0.099 0.901 13 C 0.129 3.871 14 N -0.708 5.708 15 C 0.533 3.467 16 O -0.568 6.568 17 C -0.129 4.129 18 S -0.154 6.154 19 C -0.546 4.546 20 H 0.084 0.916 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.274 1.274 27 C 0.064 3.936 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.089 0.911 36 H 0.022 0.978 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.050 0.950 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.051 0.949 43 H 0.416 0.584 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.271 0.729 47 H 0.026 0.974 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.435 -28.523 14.983 32.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.097 3.903 4 C -0.214 4.214 5 C -0.191 4.191 6 C 0.033 3.967 7 N -0.242 5.242 8 C -0.077 4.077 9 C -0.148 4.148 10 C -0.157 4.157 11 C -0.099 4.099 12 H 0.117 0.883 13 C 0.005 3.995 14 N -0.363 5.363 15 C 0.319 3.681 16 O -0.447 6.447 17 C -0.280 4.280 18 S 0.073 5.927 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.180 1.180 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.065 4.065 28 H 0.118 0.882 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.132 0.868 34 H 0.138 0.862 35 H 0.108 0.892 36 H 0.040 0.960 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.254 0.746 44 H 0.129 0.871 45 H 0.129 0.871 46 H 0.080 0.920 47 H 0.045 0.955 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.302 -28.662 13.448 32.101 hybrid contribution 0.223 1.287 1.064 1.685 sum -5.080 -27.374 14.511 31.396 Atomic orbital electron populations 1.23010 0.78301 1.04338 1.01482 1.87898 1.22296 1.27518 1.95766 1.19228 0.83032 0.85399 1.02638 1.22514 0.94084 1.02321 1.02443 1.24269 0.95729 0.98276 1.00817 1.19748 0.79408 0.92674 1.04821 1.62357 1.56804 1.01913 1.03079 1.22216 0.97477 0.98947 0.89045 1.21562 1.01324 0.92981 0.98974 1.21683 1.01168 0.99096 0.93737 1.21281 1.02001 0.92216 0.94426 0.88286 1.21306 0.94766 0.83960 0.99512 1.45697 1.39615 1.11350 1.39615 1.20084 0.82942 0.84570 0.80541 1.90694 1.34742 1.84129 1.35129 1.23367 1.03442 0.96077 1.05127 1.85594 1.50737 1.07282 1.49041 1.23249 1.22194 0.99192 1.24702 0.89829 1.26135 0.97735 1.00982 0.94318 1.70195 1.35585 1.25198 1.23868 0.84892 0.77603 0.76832 0.78531 1.17957 1.19959 1.19965 1.21990 0.96704 0.90888 0.96918 0.88169 0.92468 0.92657 0.89553 0.89791 0.86773 0.86214 0.89230 0.95996 0.90295 0.90146 0.93115 0.90683 0.92242 0.93037 0.74634 0.87147 0.87093 0.92012 0.95537 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 11.01 113.37 1.25 1.48 16 2 O -0.41 -7.35 10.66 -148.98 -1.59 -8.94 16 3 C 0.17 2.70 6.41 70.18 0.45 3.15 16 4 C -0.21 -4.20 13.73 31.12 0.43 -3.77 16 5 C -0.19 -3.40 11.00 31.13 0.34 -3.06 16 6 C 0.16 1.99 5.88 84.50 0.50 2.49 16 7 N -0.52 -7.06 4.86 -907.45 -4.41 -11.47 16 8 C 0.05 0.65 5.13 86.33 0.44 1.09 16 9 C -0.11 -1.26 6.09 30.65 0.19 -1.08 16 10 C -0.12 -1.69 5.13 30.67 0.16 -1.53 16 11 C -0.08 -1.24 2.39 -10.74 -0.03 -1.27 16 12 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 13 C 0.13 2.89 5.07 86.38 0.44 3.33 16 14 N -0.71 -17.62 5.31 -463.07 -2.46 -20.07 16 15 C 0.53 19.67 7.85 87.66 0.69 20.36 16 16 O -0.57 -26.68 15.86 -3.07 -0.05 -26.73 16 17 C -0.13 -5.08 6.15 71.23 0.44 -4.64 16 18 S -0.15 -8.57 20.57 -56.49 -1.16 -9.73 16 19 C -0.55 -31.16 9.50 67.95 0.65 -30.52 16 20 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 21 C 0.01 0.74 5.49 84.86 0.47 1.20 16 22 N -0.91 -56.16 13.22 21.65 0.29 -55.88 16 23 Si 1.00 43.54 29.55 68.60 2.03 45.57 16 24 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 27 C 0.06 1.01 4.29 86.33 0.37 1.38 16 28 H 0.10 0.71 8.14 -2.38 -0.02 0.70 16 29 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.12 1.06 8.06 -2.39 -0.02 1.05 16 35 H 0.09 0.92 8.06 -2.39 -0.02 0.90 16 36 H 0.02 0.35 7.48 -2.39 -0.02 0.33 16 37 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 0.98 7.26 -2.39 -0.02 0.97 16 41 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.42 7.42 7.67 -92.70 -0.71 6.71 16 44 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 45 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 46 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 47 H 0.03 0.51 7.27 -2.38 -0.02 0.49 16 48 H 0.08 1.28 8.12 -2.39 -0.02 1.27 16 Total: -1.00 -79.94 410.51 -0.34 -80.28 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.23 Total: 18.35 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: 6.77 Total: -11.39 kcal Atomic # 7 Polarization: -80.84 SS G_CDS: -6.58 Total: -87.42 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -1.64 Total: -35.67 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -79.94 -0.34 -80.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661702793.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.844 kcal (2) G-P(sol) polarization free energy of solvation -79.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds