Wall clock time and date at job start Tue Mar 31 2020 23:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00172 * 2 1 4 4 H 1.48503 * 109.46869 * 269.99722 * 3 2 1 5 5 H 1.48501 * 109.47192 * 29.99879 * 3 2 1 6 6 H 1.48502 * 109.47097 * 150.00391 * 3 2 1 7 7 C 1.38819 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99885 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99777 * 0.27427 * 7 2 1 10 10 C 1.46494 * 119.99800 * 179.72638 * 9 7 2 11 11 C 1.53001 * 109.47021 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.50331 * 305.00081 * 11 10 9 13 13 C 1.53040 * 109.49705 * 184.93125 * 11 10 9 14 14 C 1.53039 * 109.53680 * 178.71827 * 13 11 10 15 15 C 1.53188 * 109.34067 * 61.32054 * 14 13 11 16 16 N 1.46921 * 108.77359 * 305.37857 * 15 14 13 17 17 C 1.34777 * 120.63231 * 233.58649 * 16 15 14 18 18 O 1.21488 * 120.00407 * 172.80979 * 17 16 15 19 19 C 1.48361 * 119.99820 * 352.80749 * 17 16 15 20 20 C 1.40169 * 119.20154 * 164.55818 * 19 17 16 21 21 C 1.36622 * 119.70448 * 179.72322 * 20 19 17 22 22 C 1.40601 * 118.20644 * 0.52845 * 21 20 19 23 23 C 1.40738 * 121.37087 * 179.75472 * 22 21 20 24 24 C 1.36586 * 118.12662 * 179.97438 * 23 22 21 25 25 C 1.39425 * 119.84969 * 0.02562 * 24 23 22 26 26 N 1.31017 * 121.84019 * 359.97438 * 25 24 23 27 27 C 1.33856 * 121.42561 * 0.02562 * 26 25 24 28 28 N 1.31882 * 119.20052 * 344.82519 * 19 17 16 29 29 C 1.46925 * 118.73893 * 53.61238 * 16 15 14 30 30 H 0.96997 * 119.99841 * 359.97438 * 1 2 3 31 31 H 0.96994 * 120.00038 * 359.72430 * 9 7 2 32 32 H 1.09002 * 109.47104 * 299.99513 * 10 9 7 33 33 H 1.08998 * 109.47434 * 60.00153 * 10 9 7 34 34 H 1.09002 * 109.46138 * 298.70708 * 13 11 10 35 35 H 1.09004 * 109.46087 * 58.66857 * 13 11 10 36 36 H 1.09005 * 109.47254 * 301.36449 * 14 13 11 37 37 H 1.09011 * 109.52369 * 181.30352 * 14 13 11 38 38 H 1.09001 * 109.58501 * 185.59346 * 15 14 13 39 39 H 1.09004 * 109.70544 * 65.23991 * 15 14 13 40 40 H 1.08000 * 120.14439 * 359.97438 * 20 19 17 41 41 H 1.08004 * 120.89562 * 180.29144 * 21 20 19 42 42 H 1.07994 * 120.93627 * 359.97438 * 23 22 21 43 43 H 1.07997 * 120.07169 * 180.02562 * 24 23 22 44 44 H 1.08003 * 119.08132 * 179.97438 * 25 24 23 45 45 H 1.08997 * 109.58685 * 186.60516 * 29 16 15 46 46 H 1.09001 * 109.70734 * 66.24695 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 -0.0046 10 6 2.0580 -3.6567 -0.0101 11 6 1.0638 -4.8196 -0.0145 12 1 0.3797 -4.7167 0.8278 13 6 1.8243 -6.1424 0.1038 14 6 0.8289 -7.3044 0.1316 15 6 0.0307 -7.3202 -1.1758 16 7 -0.5869 -6.0011 -1.3687 17 6 -1.9127 -5.8884 -1.5834 18 8 -2.4324 -4.7906 -1.6112 19 6 -2.7374 -7.1049 -1.7858 20 6 -4.1321 -7.0106 -1.6822 21 6 -4.9018 -8.1232 -1.8722 22 6 -4.2545 -9.3384 -2.1573 23 6 -4.9819 -10.5261 -2.3598 24 6 -4.2856 -11.6688 -2.6334 25 6 -2.8936 -11.6332 -2.7039 26 7 -2.2200 -10.5255 -2.5147 27 6 -2.8389 -9.3702 -2.2430 28 7 -2.1402 -8.2499 -2.0536 29 6 0.2683 -4.8073 -1.3237 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0046 32 1 2.6846 -3.7106 -0.9004 33 1 2.6847 -3.7184 0.8796 34 1 2.4906 -6.2560 -0.7514 35 1 2.4103 -6.1435 1.0230 36 1 0.1470 -7.1787 0.9727 37 1 1.3696 -8.2448 0.2392 38 1 -0.7461 -8.0828 -1.1205 39 1 0.6972 -7.5373 -2.0106 40 1 -4.5963 -6.0618 -1.4571 41 1 -5.9783 -8.0715 -1.8016 42 1 -6.0602 -10.5337 -2.3006 43 1 -4.8122 -12.5979 -2.7946 44 1 -2.3555 -12.5443 -2.9206 45 1 -0.3517 -3.9118 -1.3660 46 1 0.9561 -4.8157 -2.1693 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661783537.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:57 Heat of formation + Delta-G solvation = 66.130107 kcal Electronic energy + Delta-G solvation = -28928.930350 eV Core-core repulsion = 25012.604284 eV Total energy + Delta-G solvation = -3916.326066 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.73391 -40.08365 -38.16083 -37.31773 -35.01817 -34.44637 -32.86073 -31.60138 -31.51495 -31.28595 -29.60248 -26.67571 -25.42230 -24.99050 -24.26170 -23.16124 -22.88337 -21.36696 -20.75465 -19.55705 -18.92480 -17.95411 -17.44296 -16.96898 -16.41849 -15.94312 -15.70614 -15.17537 -14.96992 -14.74366 -14.63176 -14.36549 -14.31697 -13.72190 -13.56568 -13.49115 -13.41976 -12.96340 -12.78831 -12.66564 -12.36297 -12.27730 -12.19423 -11.66813 -11.45460 -11.04885 -10.93541 -10.77512 -10.71170 -10.46357 -10.29837 -10.20169 -10.07109 -9.90262 -9.55280 -9.38572 -9.34621 -8.97547 -8.79575 -8.39779 -6.82550 -5.65963 -2.95365 -0.36185 0.08805 1.42017 2.06045 2.87534 2.99216 3.30805 3.50043 3.54472 3.56648 3.73207 3.94773 4.13783 4.17559 4.30040 4.36800 4.59499 4.66384 4.81783 4.87439 5.02257 5.12368 5.17582 5.21303 5.32430 5.39269 5.43083 5.57381 5.67322 5.68249 5.72320 5.77250 5.92616 6.00140 6.04921 6.10896 6.16338 6.24095 6.30093 6.33174 6.51214 6.61250 6.75992 6.84521 6.88552 6.96994 7.50707 7.64393 7.78532 8.18026 8.51985 9.62863 10.21427 10.55920 11.56460 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022161 B = 0.002407 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.184106 B =11627.891408 C =12674.867390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.161 3.839 11 C -0.106 4.106 12 H 0.074 0.926 13 C -0.113 4.113 14 C -0.135 4.135 15 C 0.083 3.917 16 N -0.584 5.584 17 C 0.559 3.441 18 O -0.516 6.516 19 C 0.155 3.845 20 C -0.127 4.127 21 C -0.046 4.046 22 C -0.145 4.145 23 C -0.044 4.044 24 C -0.176 4.176 25 C 0.159 3.841 26 N -0.459 5.459 27 C 0.295 3.705 28 N -0.426 5.426 29 C 0.118 3.882 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.020 0.980 33 H 0.022 0.978 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.131 0.869 39 H 0.067 0.933 40 H 0.159 0.841 41 H 0.151 0.849 42 H 0.144 0.856 43 H 0.144 0.856 44 H 0.169 0.831 45 H 0.104 0.896 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.086 -29.133 -4.601 31.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.032 3.968 11 C -0.125 4.125 12 H 0.092 0.908 13 C -0.151 4.151 14 C -0.173 4.173 15 C -0.039 4.039 16 N -0.315 5.315 17 C 0.344 3.656 18 O -0.391 6.391 19 C -0.001 4.001 20 C -0.148 4.148 21 C -0.072 4.072 22 C -0.150 4.150 23 C -0.071 4.071 24 C -0.196 4.196 25 C -0.019 4.019 26 N -0.168 5.168 27 C 0.057 3.943 28 N -0.140 5.140 29 C -0.004 4.004 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.038 0.962 33 H 0.040 0.960 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.148 0.852 39 H 0.086 0.914 40 H 0.176 0.824 41 H 0.168 0.832 42 H 0.162 0.838 43 H 0.162 0.838 44 H 0.186 0.814 45 H 0.122 0.878 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.353 -28.376 -4.720 30.248 hybrid contribution -1.535 0.866 0.099 1.765 sum -10.888 -27.510 -4.621 29.945 Atomic orbital electron populations 1.69677 1.05040 1.25563 1.57575 1.24760 0.95503 0.97650 1.03130 0.86204 0.78597 0.84003 0.77462 1.21773 1.21839 1.20836 1.19212 0.90974 0.84197 1.42741 0.91236 1.42422 1.05967 0.99954 1.89449 1.20638 0.92977 0.85127 0.98010 1.21675 0.97957 0.95229 0.97683 0.90789 1.21543 0.97571 0.93829 1.02162 1.21963 0.98476 0.98856 0.97997 1.22724 0.99406 0.84941 0.96847 1.48043 1.06207 1.09096 1.68164 1.17896 0.82199 0.87048 0.78506 1.90875 1.71457 1.25897 1.50829 1.21684 0.92415 0.91545 0.94501 1.21898 0.93116 1.01006 0.98775 1.21491 1.00923 0.90608 0.94217 1.19738 0.95759 0.95977 1.03479 1.21516 1.00661 0.91121 0.93802 1.22056 0.95908 0.99775 1.01861 1.23153 0.91537 0.95756 0.91429 1.67649 1.39823 0.97476 1.11806 1.19430 0.86515 0.91693 0.96644 1.67719 1.37497 0.97398 1.11379 1.21838 0.93331 0.87655 0.97545 0.93530 0.78071 0.96202 0.96035 0.91773 0.91701 0.92063 0.91014 0.85204 0.91432 0.82356 0.83155 0.83799 0.83795 0.81429 0.87759 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.38 13.06 55.49 0.72 -28.66 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 23.17 29.55 -169.99 -5.02 18.15 16 4 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -19.42 5.38 -59.91 -0.32 -19.74 16 10 C 0.16 3.36 5.65 -4.04 -0.02 3.34 16 11 C -0.11 -1.85 2.37 -90.50 -0.21 -2.06 16 12 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 13 C -0.11 -1.56 5.17 -26.69 -0.14 -1.69 16 14 C -0.13 -1.67 6.08 -26.61 -0.16 -1.83 16 15 C 0.08 1.12 5.82 -3.72 -0.02 1.10 16 16 N -0.58 -9.41 2.97 -173.69 -0.52 -9.93 16 17 C 0.56 9.42 7.63 -12.09 -0.09 9.33 16 18 O -0.52 -10.42 15.81 5.38 0.09 -10.33 16 19 C 0.15 2.12 6.50 -82.95 -0.54 1.58 16 20 C -0.13 -1.39 9.53 -39.44 -0.38 -1.76 16 21 C -0.05 -0.37 9.89 -39.27 -0.39 -0.75 16 22 C -0.14 -1.29 5.75 -106.68 -0.61 -1.90 16 23 C -0.04 -0.25 9.90 -39.23 -0.39 -0.63 16 24 C -0.18 -0.81 10.04 -39.74 -0.40 -1.21 16 25 C 0.16 1.03 11.14 -17.46 -0.19 0.83 16 26 N -0.46 -4.94 10.43 -12.60 -0.13 -5.07 16 27 C 0.29 3.46 7.62 -157.91 -1.20 2.26 16 28 N -0.43 -5.70 6.33 -9.19 -0.06 -5.75 16 29 C 0.12 2.12 5.53 -3.71 -0.02 2.10 16 30 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 31 H 0.39 10.88 6.89 -40.82 -0.28 10.60 16 32 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 38 H 0.13 1.77 4.21 -73.93 -0.31 1.45 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.16 1.64 7.68 -52.49 -0.40 1.23 16 41 H 0.15 0.64 8.06 -52.48 -0.42 0.22 16 42 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 43 H 0.14 0.18 8.06 -52.49 -0.42 -0.24 16 44 H 0.17 0.51 8.06 -52.48 -0.42 0.09 16 45 H 0.10 2.26 6.20 -51.93 -0.32 1.94 16 46 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 375.60 15.07 5.66 5.66 Total: -1.00 -36.36 375.60 -10.96 -47.32 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -6.36 Total: 7.31 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -5.02 Total: 1.04 kcal Atomic # 7 Polarization: -68.85 SS G_CDS: -0.30 Total: -69.15 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.36 -10.96 -47.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661783537.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.450 kcal (2) G-P(sol) polarization free energy of solvation -36.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds