Wall clock time and date at job start Tue Mar 31 2020 23:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00172 * 2 1 4 4 H 1.48503 * 109.46869 * 269.99722 * 3 2 1 5 5 H 1.48501 * 109.47192 * 29.99879 * 3 2 1 6 6 H 1.48502 * 109.47097 * 150.00391 * 3 2 1 7 7 C 1.38819 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99885 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99777 * 0.27427 * 7 2 1 10 10 C 1.46494 * 119.99800 * 179.72638 * 9 7 2 11 11 C 1.53001 * 109.47021 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.50331 * 305.00081 * 11 10 9 13 13 C 1.53040 * 109.49705 * 184.93125 * 11 10 9 14 14 C 1.53039 * 109.53680 * 178.71827 * 13 11 10 15 15 C 1.53188 * 109.34067 * 61.32054 * 14 13 11 16 16 N 1.46921 * 108.77359 * 305.37857 * 15 14 13 17 17 C 1.34777 * 120.63231 * 233.58649 * 16 15 14 18 18 O 1.21488 * 120.00407 * 172.80979 * 17 16 15 19 19 C 1.48361 * 119.99820 * 352.80749 * 17 16 15 20 20 C 1.40169 * 119.20154 * 164.55818 * 19 17 16 21 21 C 1.36622 * 119.70448 * 179.72322 * 20 19 17 22 22 C 1.40601 * 118.20644 * 0.52845 * 21 20 19 23 23 C 1.40738 * 121.37087 * 179.75472 * 22 21 20 24 24 C 1.36586 * 118.12662 * 179.97438 * 23 22 21 25 25 C 1.39425 * 119.84969 * 0.02562 * 24 23 22 26 26 N 1.31017 * 121.84019 * 359.97438 * 25 24 23 27 27 C 1.33856 * 121.42561 * 0.02562 * 26 25 24 28 28 N 1.31882 * 119.20052 * 344.82519 * 19 17 16 29 29 C 1.46925 * 118.73893 * 53.61238 * 16 15 14 30 30 H 0.96997 * 119.99841 * 359.97438 * 1 2 3 31 31 H 0.96994 * 120.00038 * 359.72430 * 9 7 2 32 32 H 1.09002 * 109.47104 * 299.99513 * 10 9 7 33 33 H 1.08998 * 109.47434 * 60.00153 * 10 9 7 34 34 H 1.09002 * 109.46138 * 298.70708 * 13 11 10 35 35 H 1.09004 * 109.46087 * 58.66857 * 13 11 10 36 36 H 1.09005 * 109.47254 * 301.36449 * 14 13 11 37 37 H 1.09011 * 109.52369 * 181.30352 * 14 13 11 38 38 H 1.09001 * 109.58501 * 185.59346 * 15 14 13 39 39 H 1.09004 * 109.70544 * 65.23991 * 15 14 13 40 40 H 1.08000 * 120.14439 * 359.97438 * 20 19 17 41 41 H 1.08004 * 120.89562 * 180.29144 * 21 20 19 42 42 H 1.07994 * 120.93627 * 359.97438 * 23 22 21 43 43 H 1.07997 * 120.07169 * 180.02562 * 24 23 22 44 44 H 1.08003 * 119.08132 * 179.97438 * 25 24 23 45 45 H 1.08997 * 109.58685 * 186.60516 * 29 16 15 46 46 H 1.09001 * 109.70734 * 66.24695 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 -0.0046 10 6 2.0580 -3.6567 -0.0101 11 6 1.0638 -4.8196 -0.0145 12 1 0.3797 -4.7167 0.8278 13 6 1.8243 -6.1424 0.1038 14 6 0.8289 -7.3044 0.1316 15 6 0.0307 -7.3202 -1.1758 16 7 -0.5869 -6.0011 -1.3687 17 6 -1.9127 -5.8884 -1.5834 18 8 -2.4324 -4.7906 -1.6112 19 6 -2.7374 -7.1049 -1.7858 20 6 -4.1321 -7.0106 -1.6822 21 6 -4.9018 -8.1232 -1.8722 22 6 -4.2545 -9.3384 -2.1573 23 6 -4.9819 -10.5261 -2.3598 24 6 -4.2856 -11.6688 -2.6334 25 6 -2.8936 -11.6332 -2.7039 26 7 -2.2200 -10.5255 -2.5147 27 6 -2.8389 -9.3702 -2.2430 28 7 -2.1402 -8.2499 -2.0536 29 6 0.2683 -4.8073 -1.3237 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0046 32 1 2.6846 -3.7106 -0.9004 33 1 2.6847 -3.7184 0.8796 34 1 2.4906 -6.2560 -0.7514 35 1 2.4103 -6.1435 1.0230 36 1 0.1470 -7.1787 0.9727 37 1 1.3696 -8.2448 0.2392 38 1 -0.7461 -8.0828 -1.1205 39 1 0.6972 -7.5373 -2.0106 40 1 -4.5963 -6.0618 -1.4571 41 1 -5.9783 -8.0715 -1.8016 42 1 -6.0602 -10.5337 -2.3006 43 1 -4.8122 -12.5979 -2.7946 44 1 -2.3555 -12.5443 -2.9206 45 1 -0.3517 -3.9118 -1.3660 46 1 0.9561 -4.8157 -2.1693 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661783537.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:56 Heat of formation + Delta-G solvation = 41.947433 kcal Electronic energy + Delta-G solvation = -28929.978989 eV Core-core repulsion = 25012.604284 eV Total energy + Delta-G solvation = -3917.374705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.50011 -41.21180 -39.18886 -38.45027 -36.67565 -35.30721 -34.40179 -33.14769 -32.25407 -32.05820 -31.31925 -27.81795 -27.07443 -25.83227 -25.15162 -24.84628 -23.63479 -22.71727 -22.03896 -20.78161 -19.69165 -19.22371 -18.80270 -18.14764 -17.37100 -17.06654 -16.77171 -16.67366 -16.13384 -15.82081 -15.64419 -15.47580 -15.30472 -15.21699 -15.13446 -14.51175 -14.30867 -14.15212 -14.12967 -13.97080 -13.76126 -13.28347 -13.03975 -12.93584 -12.82666 -12.72053 -12.26386 -12.19390 -12.07378 -11.96796 -11.94200 -11.74087 -11.59225 -11.36677 -10.96517 -10.93328 -10.11755 -9.98548 -9.81526 -9.68140 -9.01842 -7.94431 -5.25238 -1.04559 -0.56570 0.80267 1.23694 1.44838 1.48325 1.56705 1.72758 2.01860 2.48342 2.55313 3.00857 3.26072 3.36007 3.38048 3.60468 3.65929 3.72271 3.84969 3.91732 3.93095 4.00838 4.10227 4.16590 4.21838 4.30394 4.47175 4.49754 4.62498 4.66423 4.73125 4.77059 4.78439 4.89916 4.94692 5.00781 5.05322 5.05673 5.14752 5.17359 5.23114 5.31306 5.43592 5.48602 5.51206 5.64137 6.09282 6.25933 6.28631 6.85782 7.03682 7.31312 8.07177 8.30185 9.29203 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022161 B = 0.002407 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.184106 B =11627.891408 C =12674.867390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.081 4.081 3 Si 0.979 3.021 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.266 1.266 7 C -0.246 4.246 8 H 0.080 0.920 9 N -0.748 5.748 10 C 0.160 3.840 11 C -0.093 4.093 12 H 0.053 0.947 13 C -0.105 4.105 14 C -0.127 4.127 15 C 0.083 3.917 16 N -0.585 5.585 17 C 0.551 3.449 18 O -0.567 6.567 19 C 0.130 3.870 20 C -0.150 4.150 21 C -0.020 4.020 22 C -0.153 4.153 23 C -0.041 4.041 24 C -0.160 4.160 25 C 0.163 3.837 26 N -0.504 5.504 27 C 0.267 3.733 28 N -0.446 5.446 29 C 0.125 3.875 30 H 0.250 0.750 31 H 0.371 0.629 32 H 0.028 0.972 33 H 0.030 0.970 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.104 0.896 38 H 0.136 0.864 39 H 0.073 0.927 40 H 0.153 0.847 41 H 0.196 0.804 42 H 0.185 0.815 43 H 0.189 0.811 44 H 0.201 0.799 45 H 0.058 0.942 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.597 -33.246 -4.892 35.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.273 4.273 3 Si 0.807 3.193 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.190 1.190 7 C -0.378 4.378 8 H 0.098 0.902 9 N -0.391 5.391 10 C 0.033 3.967 11 C -0.112 4.112 12 H 0.071 0.929 13 C -0.143 4.143 14 C -0.165 4.165 15 C -0.038 4.038 16 N -0.315 5.315 17 C 0.338 3.662 18 O -0.445 6.445 19 C -0.024 4.024 20 C -0.171 4.171 21 C -0.046 4.046 22 C -0.158 4.158 23 C -0.067 4.067 24 C -0.180 4.180 25 C -0.014 4.014 26 N -0.214 5.214 27 C 0.030 3.970 28 N -0.160 5.160 29 C 0.002 3.998 30 H 0.059 0.941 31 H 0.203 0.797 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.122 0.878 38 H 0.152 0.848 39 H 0.091 0.909 40 H 0.170 0.830 41 H 0.213 0.787 42 H 0.202 0.798 43 H 0.206 0.794 44 H 0.218 0.782 45 H 0.077 0.923 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.805 -32.547 -5.005 34.359 hybrid contribution -1.431 1.813 0.110 2.312 sum -11.236 -30.735 -4.895 33.088 Atomic orbital electron populations 1.69874 1.06888 1.26062 1.59486 1.25694 0.96403 1.01505 1.03719 0.85061 0.77689 0.79066 0.77453 1.21368 1.22218 1.19018 1.19684 0.91607 0.85262 1.41199 0.90216 1.42675 1.05564 1.01436 1.89425 1.20821 0.93471 0.84096 0.98315 1.21524 0.97083 0.96303 0.96329 0.92884 1.21512 0.97617 0.91664 1.03482 1.21939 0.98004 0.99652 0.96875 1.22902 0.99704 0.83471 0.97703 1.48140 1.06148 1.09387 1.67818 1.18525 0.82483 0.87837 0.77337 1.90823 1.72438 1.28117 1.53132 1.21140 0.92937 0.90592 0.97728 1.21906 0.92216 1.02174 1.00764 1.21939 1.02620 0.89029 0.91051 1.20036 0.94899 0.97707 1.03139 1.22012 1.02572 0.89699 0.92455 1.22562 0.95051 1.01222 0.99130 1.23920 0.93107 0.95460 0.88881 1.67645 1.41364 0.98225 1.14181 1.19671 0.88033 0.91493 0.97844 1.67417 1.38655 0.97868 1.12097 1.21539 0.92914 0.87159 0.98170 0.94083 0.79746 0.95422 0.95241 0.90429 0.90247 0.92845 0.87811 0.84795 0.90877 0.82961 0.78731 0.79753 0.79376 0.78241 0.92322 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -64.12 13.06 21.65 0.28 -63.84 16 2 C -0.08 -4.98 5.50 84.86 0.47 -4.51 16 3 Si 0.98 48.65 29.55 68.60 2.03 50.67 16 4 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 5 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.25 -14.60 9.99 84.04 0.84 -13.76 16 8 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 9 N -0.75 -41.40 5.38 -343.46 -1.85 -43.25 16 10 C 0.16 6.84 5.65 86.38 0.49 7.33 16 11 C -0.09 -3.38 2.37 -10.71 -0.03 -3.40 16 12 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 13 C -0.10 -2.79 5.17 30.62 0.16 -2.63 16 14 C -0.13 -3.03 6.08 30.67 0.19 -2.85 16 15 C 0.08 2.29 5.82 86.36 0.50 2.80 16 16 N -0.58 -20.37 2.97 -821.74 -2.44 -22.81 16 17 C 0.55 20.60 7.63 86.94 0.66 21.26 16 18 O -0.57 -25.72 15.81 -3.68 -0.06 -25.78 16 19 C 0.13 3.85 6.50 42.30 0.27 4.13 16 20 C -0.15 -3.44 9.53 22.36 0.21 -3.23 16 21 C -0.02 -0.29 9.89 22.47 0.22 -0.07 16 22 C -0.15 -2.37 5.75 -21.20 -0.12 -2.49 16 23 C -0.04 -0.26 9.90 22.49 0.22 -0.04 16 24 C -0.16 -0.63 10.04 22.17 0.22 -0.41 16 25 C 0.16 1.53 11.14 85.10 0.95 2.48 16 26 N -0.50 -10.13 10.43 -193.76 -2.02 -12.15 16 27 C 0.27 6.12 7.62 135.12 1.03 7.15 16 28 N -0.45 -12.42 6.33 -182.98 -1.16 -13.58 16 29 C 0.12 4.87 5.53 86.36 0.48 5.35 16 30 H 0.25 15.95 8.31 -92.71 -0.77 15.18 16 31 H 0.37 22.44 6.89 -92.71 -0.64 21.80 16 32 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.03 1.23 8.14 -2.39 -0.02 1.22 16 34 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 36 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 38 H 0.14 3.76 4.21 -45.83 -0.19 3.57 16 39 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.15 3.53 7.68 -2.91 -0.02 3.51 16 41 H 0.20 0.90 8.06 -2.91 -0.02 0.87 16 42 H 0.19 -0.34 8.06 -2.91 -0.02 -0.36 16 43 H 0.19 -0.87 8.06 -2.91 -0.02 -0.89 16 44 H 0.20 0.37 8.06 -2.91 -0.02 0.34 16 45 H 0.06 2.84 6.20 -2.39 -0.01 2.83 16 46 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -86.84 375.60 1.74 -85.10 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: 0.19 Total: 28.53 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 6.77 Total: 17.11 kcal Atomic # 7 Polarization: -148.45 SS G_CDS: -7.18 Total: -155.63 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.06 Total: -25.78 kcal Atomic # 14 Polarization: 48.65 SS G_CDS: 2.03 Total: 50.67 kcal Total: -86.84 1.74 -85.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661783537.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.043 kcal (2) G-P(sol) polarization free energy of solvation -86.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds