Wall clock time and date at job start Tue Mar 31 2020 23:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35908 * 117.00318 * 2 1 4 4 C 1.38854 * 119.98274 * 0.02562 * 3 2 1 5 5 C 1.38245 * 120.23683 * 179.97438 * 4 3 2 6 6 C 1.38001 * 120.20558 * 359.74353 * 5 4 3 7 7 C 1.39553 * 119.96802 * 0.50990 * 6 5 4 8 8 C 1.47867 * 120.12004 * 179.76829 * 7 6 5 9 9 O 1.21555 * 119.99914 * 179.72377 * 8 7 6 10 10 N 1.34775 * 119.99813 * 359.72316 * 8 7 6 11 11 C 1.46498 * 119.99673 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47043 * 179.97438 * 11 10 8 13 13 H 1.08994 * 109.47767 * 295.00323 * 12 11 10 14 14 N 1.46506 * 109.46808 * 55.00436 * 12 11 10 15 15 C 1.36938 * 119.99589 * 205.00092 * 14 12 11 16 16 H 1.07999 * 120.00325 * 359.97438 * 15 14 12 17 17 C 1.38815 * 119.99817 * 180.02562 * 15 14 12 18 18 N 1.31621 * 119.99673 * 359.71804 * 17 15 14 19 19 Si 1.86795 * 120.00115 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47163 * 59.99668 * 19 17 15 21 21 H 1.48505 * 109.47234 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47124 * 299.99692 * 19 17 15 23 23 C 1.50701 * 109.47055 * 175.00016 * 12 11 10 24 24 C 1.38239 * 120.00111 * 279.72946 * 23 12 11 25 25 C 1.38232 * 120.00114 * 179.79245 * 24 23 12 26 26 C 1.38242 * 119.99966 * 0.43498 * 25 24 23 27 27 C 1.38240 * 119.99528 * 359.81911 * 26 25 24 28 28 C 1.38230 * 119.99996 * 100.00415 * 23 12 11 29 29 C 1.38447 * 119.98667 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46775 * 299.99856 * 1 2 3 31 31 H 1.09003 * 109.47298 * 59.99371 * 1 2 3 32 32 H 1.08994 * 109.47471 * 179.97438 * 1 2 3 33 33 H 1.08004 * 119.88182 * 359.97438 * 4 3 2 34 34 H 1.08004 * 119.89719 * 180.02562 * 5 4 3 35 35 H 1.08013 * 120.01518 * 180.25806 * 6 5 4 36 36 H 0.96995 * 120.00100 * 0.02562 * 10 8 7 37 37 H 1.09004 * 109.47353 * 60.00016 * 11 10 8 38 38 H 1.08999 * 109.47248 * 300.00266 * 11 10 8 39 39 H 0.96999 * 120.00080 * 24.99582 * 14 12 11 40 40 H 0.97000 * 120.00043 * 180.02562 * 18 17 15 41 41 H 1.07998 * 119.99958 * 359.97438 * 24 23 12 42 42 H 1.07999 * 120.00029 * 180.27545 * 25 24 23 43 43 H 1.07992 * 120.00330 * 179.83133 * 26 25 24 44 44 H 1.07997 * 119.99389 * 179.97438 * 27 26 25 45 45 H 1.08006 * 119.99987 * 359.97438 * 28 23 12 46 46 H 1.08002 * 120.10353 * 0.03469 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2896 2.3752 0.0005 5 6 1.9118 3.6098 0.0011 6 6 3.2893 3.6930 0.0064 7 6 4.0580 2.5283 0.0005 8 6 5.5342 2.6135 0.0011 9 8 6.2017 1.5976 0.0010 10 7 6.1396 3.8177 0.0016 11 6 7.6022 3.9021 0.0027 12 6 8.0281 5.3716 0.0024 13 1 7.7129 5.8412 -0.9292 14 7 7.4024 6.0616 1.1332 15 6 7.1955 7.4142 1.0804 16 1 7.4940 7.9724 0.2054 17 6 6.6030 8.0681 2.1521 18 7 6.2351 7.3870 3.2166 19 14 6.3215 9.9133 2.0804 20 1 5.4379 10.2349 0.9309 21 1 5.6781 10.3652 3.3402 22 1 7.6238 10.6066 1.9128 23 6 9.5274 5.4600 0.1274 24 6 10.1267 5.3278 1.3660 25 6 11.5022 5.4046 1.4800 26 6 12.2778 5.6227 0.3566 27 6 11.6780 5.7602 -0.8812 28 6 10.3028 5.6791 -0.9958 29 6 3.4287 1.2830 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 0.2111 2.3162 0.0005 34 1 1.3180 4.5119 0.0019 35 1 3.7722 4.6591 0.0110 36 1 5.6070 4.6283 0.0020 37 1 7.9952 3.4101 -0.8871 38 1 7.9939 3.4100 0.8929 39 1 7.1345 5.5603 1.9193 40 1 5.8208 7.8438 3.9653 41 1 9.5206 5.1615 2.2442 42 1 11.9708 5.2968 2.4471 43 1 13.3522 5.6854 0.4460 44 1 12.2839 5.9309 -1.7588 45 1 9.8342 5.7864 -1.9630 46 1 4.0183 0.3781 -0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664599513.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:00 Heat of formation + Delta-G solvation = -6.755754 kcal Electronic energy + Delta-G solvation = -28371.461686 eV Core-core repulsion = 24419.682301 eV Total energy + Delta-G solvation = -3951.779385 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.41963 -39.38029 -38.75481 -37.10043 -35.89146 -33.65380 -32.10693 -31.25396 -30.41433 -30.34439 -29.56902 -27.49724 -27.43874 -24.27928 -23.32699 -22.53518 -22.36558 -21.89742 -20.20648 -19.96050 -18.54130 -17.37506 -16.62121 -16.35426 -16.19641 -16.03601 -15.92827 -15.38774 -15.24283 -14.71521 -14.55133 -14.19196 -13.94565 -13.72186 -13.57643 -13.40279 -13.03434 -12.87517 -12.77195 -12.67532 -12.37073 -12.30045 -11.98479 -11.86925 -11.25669 -11.12460 -11.05795 -10.96494 -10.85011 -10.71888 -10.47013 -10.19577 -9.83164 -9.72648 -9.10909 -9.09453 -8.67466 -8.40723 -8.33800 -8.19319 -7.15780 -5.88564 -3.20313 0.82970 1.35987 1.86029 1.92903 2.99248 3.01590 3.36473 3.42588 3.43036 3.57440 3.91447 4.30560 4.48624 4.64179 4.70990 4.89278 4.90696 5.01869 5.15340 5.22110 5.25088 5.31817 5.34587 5.41447 5.43067 5.49646 5.55628 5.61345 5.77011 5.85603 5.87480 6.03658 6.09130 6.13382 6.25306 6.31965 6.34128 6.41190 6.48265 6.53188 6.62894 6.77869 6.93555 7.02161 7.22646 7.28100 7.52870 7.61323 7.86919 8.27279 8.49261 9.40376 9.90052 10.26946 11.32500 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009958 B = 0.003101 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.103525 B = 9028.126405 C =11280.837711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.113 3.887 4 C -0.187 4.187 5 C -0.086 4.086 6 C -0.115 4.115 7 C -0.090 4.090 8 C 0.555 3.445 9 O -0.546 6.546 10 N -0.705 5.705 11 C 0.121 3.879 12 C 0.198 3.802 13 H 0.066 0.934 14 N -0.714 5.714 15 C -0.245 4.245 16 H 0.071 0.929 17 C -0.004 4.004 18 N -0.927 5.927 19 Si 0.905 3.095 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.082 4.082 24 C -0.083 4.083 25 C -0.128 4.128 26 C -0.134 4.134 27 C -0.130 4.130 28 C -0.120 4.120 29 C -0.094 4.094 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.411 0.589 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.387 0.613 40 H 0.257 0.743 41 H 0.123 0.877 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.115 0.885 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.918 -9.437 -7.887 13.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.230 6.230 3 C 0.068 3.932 4 C -0.206 4.206 5 C -0.104 4.104 6 C -0.134 4.134 7 C -0.093 4.093 8 C 0.342 3.658 9 O -0.426 6.426 10 N -0.357 5.357 11 C -0.004 4.004 12 C 0.087 3.913 13 H 0.084 0.916 14 N -0.355 5.355 15 C -0.376 4.376 16 H 0.089 0.911 17 C -0.201 4.201 18 N -0.574 5.574 19 Si 0.736 3.264 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.086 4.086 24 C -0.101 4.101 25 C -0.146 4.146 26 C -0.152 4.152 27 C -0.148 4.148 28 C -0.139 4.139 29 C -0.114 4.114 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.249 0.751 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.222 0.778 40 H 0.067 0.933 41 H 0.141 0.859 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.133 0.867 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.401 -10.135 -7.896 13.937 hybrid contribution -0.636 1.682 0.451 1.853 sum -6.037 -8.453 -7.445 12.780 Atomic orbital electron populations 1.23054 0.78468 1.03908 1.01340 1.86086 1.21269 1.26705 1.88978 1.18830 0.92018 0.84310 0.98015 1.21400 1.00108 0.92389 1.06738 1.20908 0.94427 0.97187 0.97926 1.21400 0.94086 0.98106 0.99815 1.19755 0.93241 0.93348 1.02934 1.18143 0.87071 0.83749 0.76867 1.90747 1.66036 1.35114 1.50661 1.45873 1.08127 1.08346 1.73348 1.21623 0.79300 0.97342 1.02127 1.19488 0.87783 0.90208 0.93855 0.91616 1.42464 1.70578 1.05917 1.16552 1.19140 1.33553 0.83831 1.01104 0.91137 1.24714 1.01241 0.97797 0.96331 1.69647 1.46388 1.34790 1.06608 0.86313 0.77870 0.85519 0.76715 1.21190 1.21718 1.21258 1.20966 0.97615 0.97008 0.92971 1.21009 0.93936 0.97383 0.97788 1.21108 0.94278 1.01128 0.98079 1.20985 0.99082 1.02046 0.93115 1.20981 0.94871 1.01837 0.97133 1.21008 0.93616 1.01102 0.98151 1.20431 0.91190 0.98278 1.01497 0.92602 0.92677 0.88267 0.85263 0.85006 0.84631 0.75101 0.91291 0.91366 0.77807 0.93312 0.85881 0.86859 0.87096 0.87000 0.86736 0.83961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.68 10.49 -19.45 -0.20 -3.89 16 3 C 0.11 1.44 6.68 -39.28 -0.26 1.18 16 4 C -0.19 -2.05 9.03 -39.35 -0.36 -2.41 16 5 C -0.09 -1.00 10.03 -39.67 -0.40 -1.39 16 6 C -0.12 -1.55 9.54 -39.18 -0.37 -1.92 16 7 C -0.09 -1.36 5.87 -104.98 -0.62 -1.97 16 8 C 0.56 9.59 7.77 -12.32 -0.10 9.49 16 9 O -0.55 -10.90 16.35 5.32 0.09 -10.81 16 10 N -0.70 -11.66 5.34 -61.24 -0.33 -11.99 16 11 C 0.12 2.03 5.21 -4.04 -0.02 2.01 16 12 C 0.20 3.58 2.65 -69.08 -0.18 3.40 16 13 H 0.07 1.18 7.94 -51.93 -0.41 0.76 16 14 N -0.71 -15.75 3.79 -54.55 -0.21 -15.96 16 15 C -0.25 -6.16 9.92 -15.06 -0.15 -6.31 16 16 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 17 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16 18 N -0.93 -25.93 13.06 55.49 0.72 -25.20 16 19 Si 0.91 21.22 29.55 -169.99 -5.02 16.20 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 23 C -0.08 -1.46 4.92 -104.62 -0.52 -1.98 16 24 C -0.08 -1.52 9.33 -39.58 -0.37 -1.89 16 25 C -0.13 -2.07 10.05 -39.58 -0.40 -2.47 16 26 C -0.13 -1.98 10.05 -39.58 -0.40 -2.37 16 27 C -0.13 -1.91 10.05 -39.58 -0.40 -2.30 16 28 C -0.12 -1.91 9.67 -39.59 -0.38 -2.29 16 29 C -0.09 -1.38 9.53 -39.02 -0.37 -1.75 16 30 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 31 H 0.05 0.32 7.66 -51.93 -0.40 -0.07 16 32 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.13 1.05 6.28 -52.48 -0.33 0.72 16 34 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 35 H 0.14 1.79 6.40 -52.48 -0.34 1.45 16 36 H 0.41 6.70 6.17 -40.82 -0.25 6.44 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.39 9.28 7.80 -40.82 -0.32 8.96 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.12 2.42 7.71 -52.49 -0.40 2.01 16 42 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 43 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 44 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 45 H 0.11 1.59 8.04 -52.48 -0.42 1.17 16 46 H 0.14 2.13 7.65 -52.49 -0.40 1.72 16 LS Contribution 391.59 15.07 5.90 5.90 Total: -1.00 -30.60 391.59 -9.62 -40.22 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: -6.18 Total: 17.53 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -4.39 Total: -12.00 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: 0.19 Total: -53.15 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.12 Total: -14.70 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.60 -9.62 -40.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664599513.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.464 kcal (2) G-P(sol) polarization free energy of solvation -30.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds