Wall clock time and date at job start Tue Mar 31 2020 23:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99733 * 2 1 4 4 H 1.48499 * 109.47332 * 269.99985 * 3 2 1 5 5 H 1.48506 * 109.47066 * 30.00447 * 3 2 1 6 6 H 1.48497 * 109.47143 * 149.99717 * 3 2 1 7 7 C 1.38810 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99780 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00040 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99994 * 174.37163 * 9 7 2 11 11 C 1.53005 * 110.01274 * 61.55212 * 10 9 7 12 12 N 1.46503 * 109.47306 * 55.25539 * 11 10 9 13 13 C 1.34765 * 119.99918 * 175.53388 * 12 11 10 14 14 O 1.21557 * 120.00554 * 0.02562 * 13 12 11 15 15 C 1.47867 * 119.99836 * 179.97438 * 13 12 11 16 16 C 1.40619 * 119.75566 * 0.02562 * 15 13 12 17 17 C 1.35730 * 120.83282 * 180.02562 * 16 15 13 18 18 C 1.40705 * 120.08475 * 0.25603 * 17 16 15 19 19 N 1.33803 * 120.85580 * 180.27291 * 18 17 16 20 20 C 1.31321 * 119.76218 * 179.73498 * 19 18 17 21 21 C 1.39759 * 120.71247 * 359.73328 * 20 19 18 22 22 N 1.31272 * 120.67608 * 0.02562 * 21 20 19 23 23 C 1.33823 * 119.73543 * 359.97438 * 22 21 20 24 24 C 1.38423 * 119.75162 * 180.02562 * 15 13 12 25 25 C 1.54273 * 110.07119 * 182.96564 * 10 9 7 26 26 C 1.54893 * 104.19285 * 95.70130 * 25 10 9 27 27 C 1.54891 * 102.74747 * 37.94230 * 26 25 10 28 28 C 1.53868 * 110.03443 * 300.15898 * 10 9 7 29 29 H 0.97001 * 120.00652 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99702 * 354.37807 * 9 7 2 31 31 H 1.09003 * 109.46793 * 295.25350 * 11 10 9 32 32 H 1.08997 * 109.46645 * 175.25767 * 11 10 9 33 33 H 0.97004 * 119.99713 * 355.53997 * 12 11 10 34 34 H 1.07992 * 119.57947 * 0.02562 * 16 15 13 35 35 H 1.08002 * 119.95646 * 179.97438 * 17 16 15 36 36 H 1.08004 * 119.64498 * 179.71250 * 20 19 18 37 37 H 1.08003 * 119.65784 * 179.97438 * 21 20 19 38 38 H 1.07995 * 120.25547 * 359.96054 * 24 15 13 39 39 H 1.08998 * 110.48649 * 214.37786 * 25 10 9 40 40 H 1.09001 * 110.48647 * 337.02430 * 25 10 9 41 41 H 1.09002 * 110.75349 * 279.62423 * 26 25 10 42 42 H 1.09000 * 110.75213 * 156.25532 * 26 25 10 43 43 H 1.09005 * 110.48098 * 203.37894 * 27 26 25 44 44 H 1.08993 * 110.48553 * 80.73534 * 27 26 25 45 45 H 1.09002 * 110.03426 * 359.94744 * 28 10 9 46 46 H 1.08999 * 110.03012 * 121.38140 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7002 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0016 10 6 2.0530 -3.6536 -0.1266 11 6 3.0115 -3.8255 1.0536 12 7 2.2647 -3.7159 2.3092 13 6 2.8893 -3.9246 3.4850 14 8 4.0723 -4.2032 3.5039 15 6 2.1357 -3.8134 4.7524 16 6 0.7674 -3.4903 4.7247 17 6 0.0547 -3.3821 5.8747 18 6 0.6837 -3.5886 7.1163 19 7 -0.0053 -3.4912 8.2592 20 6 0.6022 -3.6933 9.4058 21 6 1.9617 -4.0150 9.4464 22 7 2.6581 -4.1211 8.3387 23 6 2.0617 -3.9198 7.1578 24 6 2.7824 -4.0283 5.9572 25 6 1.0593 -4.8326 -0.1764 26 6 0.8693 -5.1055 -1.6892 27 6 2.2917 -4.8785 -2.2588 28 6 2.8365 -3.6828 -1.4506 29 1 -0.4851 0.8400 0.0004 30 1 0.3591 -2.3901 0.0803 31 1 3.7761 -3.0494 1.0166 32 1 3.4854 -4.8054 0.9969 33 1 1.3207 -3.4933 2.2942 34 1 0.2775 -3.3261 3.7764 35 1 -0.9955 -3.1328 5.8370 36 1 0.0454 -3.6096 10.3275 37 1 2.4442 -4.1773 10.3989 38 1 3.8332 -4.2769 5.9740 39 1 1.4803 -5.7075 0.3191 40 1 0.1113 -4.5522 0.2827 41 1 0.1620 -4.3988 -2.1233 42 1 0.5446 -6.1321 -1.8587 43 1 2.2429 -4.6317 -3.3194 44 1 2.9116 -5.7608 -2.0995 45 1 2.6748 -2.7557 -2.0006 46 1 3.8995 -3.8194 -1.2524 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666804384.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:18 Heat of formation + Delta-G solvation = 18.656326 kcal Electronic energy + Delta-G solvation = -29091.844829 eV Core-core repulsion = 25173.460146 eV Total energy + Delta-G solvation = -3918.384683 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.49433 -41.06316 -39.69334 -38.06925 -35.90496 -35.62814 -35.17020 -32.63427 -31.95455 -31.71355 -29.62001 -29.47303 -27.05453 -25.85608 -25.56392 -24.74253 -23.36180 -22.30660 -21.44883 -20.39639 -19.60976 -19.39322 -18.91592 -18.17717 -17.60687 -17.13954 -16.66868 -16.38440 -16.02220 -16.00548 -15.76917 -15.67379 -15.30805 -15.10136 -14.87181 -14.86834 -14.50228 -14.04067 -13.59238 -13.53380 -13.26384 -12.93765 -12.88135 -12.83747 -12.80463 -12.75552 -12.63541 -12.29418 -12.06907 -11.83241 -11.78536 -11.53878 -11.43605 -11.32449 -11.14009 -10.88176 -10.21076 -10.19001 -9.96594 -9.72681 -8.95799 -7.91053 -5.16494 -1.04211 -0.65583 0.69668 1.27209 1.43675 1.46737 1.51883 2.08019 2.21002 2.56404 2.92168 2.96585 3.09093 3.17217 3.39918 3.55890 3.74706 3.75993 3.84131 3.87048 3.95881 3.97469 4.08435 4.16927 4.41570 4.43547 4.56933 4.63573 4.69182 4.70310 4.77013 4.85490 4.91170 4.98000 5.01926 5.03203 5.13374 5.14706 5.21016 5.29016 5.40096 5.43581 5.48008 5.53491 5.64276 5.70786 6.18208 6.33050 6.53014 6.64272 7.13120 7.40875 8.13491 8.39086 9.31054 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011027 B = 0.003222 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.570401 B = 8689.176009 C = 9947.702869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.060 4.060 3 Si 0.946 3.054 4 H -0.291 1.291 5 H -0.298 1.298 6 H -0.283 1.283 7 C -0.215 4.215 8 H 0.062 0.938 9 N -0.714 5.714 10 C 0.184 3.816 11 C 0.124 3.876 12 N -0.686 5.686 13 C 0.550 3.450 14 O -0.581 6.581 15 C -0.117 4.117 16 C -0.072 4.072 17 C -0.083 4.083 18 C 0.077 3.923 19 N -0.451 5.451 20 C 0.098 3.902 21 C 0.087 3.913 22 N -0.450 5.450 23 C 0.050 3.950 24 C -0.027 4.027 25 C -0.117 4.117 26 C -0.115 4.115 27 C -0.114 4.114 28 C -0.131 4.131 29 H 0.248 0.752 30 H 0.377 0.623 31 H 0.035 0.965 32 H 0.073 0.927 33 H 0.409 0.591 34 H 0.152 0.848 35 H 0.164 0.836 36 H 0.226 0.774 37 H 0.223 0.777 38 H 0.142 0.858 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.051 0.949 42 H 0.085 0.915 43 H 0.063 0.937 44 H 0.079 0.921 45 H 0.050 0.950 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.512 -13.029 14.153 19.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.253 4.253 3 Si 0.778 3.222 4 H -0.218 1.218 5 H -0.225 1.225 6 H -0.208 1.208 7 C -0.348 4.348 8 H 0.080 0.920 9 N -0.355 5.355 10 C 0.094 3.906 11 C -0.002 4.002 12 N -0.336 5.336 13 C 0.337 3.663 14 O -0.463 6.463 15 C -0.122 4.122 16 C -0.092 4.092 17 C -0.102 4.102 18 C -0.045 4.045 19 N -0.165 5.165 20 C -0.079 4.079 21 C -0.091 4.091 22 N -0.164 5.164 23 C -0.072 4.072 24 C -0.048 4.048 25 C -0.155 4.155 26 C -0.153 4.153 27 C -0.151 4.151 28 C -0.171 4.171 29 H 0.057 0.943 30 H 0.211 0.789 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.247 0.753 34 H 0.170 0.830 35 H 0.182 0.818 36 H 0.242 0.758 37 H 0.240 0.760 38 H 0.159 0.841 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.104 0.896 43 H 0.081 0.919 44 H 0.098 0.902 45 H 0.068 0.932 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.550 -13.073 13.799 19.016 hybrid contribution 0.000 1.716 -0.227 1.731 sum -0.549 -11.357 13.572 17.705 Atomic orbital electron populations 1.69739 1.05774 1.25492 1.59813 1.25176 0.96021 0.99660 1.04419 0.85549 0.77768 0.81755 0.77140 1.21830 1.22503 1.20839 1.19219 0.90789 0.85006 1.39750 0.91955 1.42607 1.05752 1.00060 1.87074 1.20704 0.91623 0.86719 0.91598 1.21910 0.94744 0.99936 0.83635 1.45674 1.14481 1.68354 1.05074 1.18412 0.86437 0.77058 0.84364 1.90721 1.16694 1.50941 1.87975 1.19954 0.94991 1.04296 0.92925 1.21193 0.91951 0.95811 1.00224 1.20903 1.01770 0.98721 0.88806 1.19815 0.91232 0.98799 0.94639 1.68812 1.37717 1.11472 0.98466 1.25050 0.94103 0.90917 0.97799 1.24985 0.93070 0.92583 0.98418 1.68697 1.38413 1.10913 0.98389 1.19419 0.92450 1.02005 0.93321 1.21158 1.00383 0.94169 0.89061 1.22565 0.98512 0.96703 0.97716 1.22401 0.96805 1.01488 0.94566 1.22295 0.96497 0.97434 0.98918 1.22599 0.99010 0.98971 0.96496 0.94273 0.78915 0.94671 0.90935 0.75344 0.83039 0.81815 0.75808 0.76042 0.84060 0.89783 0.91469 0.92993 0.89648 0.91853 0.90246 0.93150 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.51 13.07 21.65 0.28 -54.23 16 2 C -0.06 -3.24 5.50 84.86 0.47 -2.77 16 3 Si 0.95 45.63 29.55 68.60 2.03 47.66 16 4 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 5 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 6 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 7 C -0.22 -10.99 8.52 84.03 0.72 -10.27 16 8 H 0.06 3.25 7.27 -2.91 -0.02 3.23 16 9 N -0.71 -31.11 4.53 -300.07 -1.36 -32.47 16 10 C 0.18 6.34 0.68 4.33 0.00 6.35 16 11 C 0.12 4.39 4.04 86.38 0.35 4.74 16 12 N -0.69 -23.32 5.18 -465.95 -2.41 -25.73 16 13 C 0.55 19.65 7.77 86.79 0.67 20.32 16 14 O -0.58 -24.29 16.30 -3.89 -0.06 -24.35 16 15 C -0.12 -3.59 5.87 -20.10 -0.12 -3.71 16 16 C -0.07 -1.88 9.44 22.27 0.21 -1.67 16 17 C -0.08 -2.02 9.95 22.29 0.22 -1.79 16 18 C 0.08 1.99 6.59 40.32 0.27 2.26 16 19 N -0.45 -9.68 10.46 -187.88 -1.96 -11.65 16 20 C 0.10 1.27 11.21 85.14 0.95 2.22 16 21 C 0.09 1.19 11.21 85.14 0.95 2.14 16 22 N -0.45 -10.67 10.46 -188.11 -1.97 -12.64 16 23 C 0.05 1.37 6.58 40.26 0.27 1.64 16 24 C -0.03 -0.82 9.56 22.85 0.22 -0.60 16 25 C -0.12 -3.21 5.72 31.67 0.18 -3.03 16 26 C -0.12 -2.92 6.91 31.89 0.22 -2.70 16 27 C -0.11 -2.95 6.83 31.67 0.22 -2.73 16 28 C -0.13 -4.36 5.93 31.32 0.19 -4.17 16 29 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 30 H 0.38 17.52 7.45 -92.70 -0.69 16.83 16 31 H 0.03 1.46 7.46 -2.39 -0.02 1.44 16 32 H 0.07 2.37 8.04 -2.39 -0.02 2.35 16 33 H 0.41 13.08 5.98 -92.71 -0.55 12.53 16 34 H 0.15 3.61 6.35 -2.91 -0.02 3.59 16 35 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 36 H 0.23 0.52 8.06 -2.91 -0.02 0.50 16 37 H 0.22 0.76 8.06 -2.91 -0.02 0.74 16 38 H 0.14 4.48 7.61 -2.91 -0.02 4.45 16 39 H 0.08 2.02 7.79 -2.39 -0.02 2.00 16 40 H 0.07 1.86 7.72 -2.39 -0.02 1.84 16 41 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 43 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.05 2.01 7.36 -2.39 -0.02 1.99 16 46 H 0.06 1.82 7.67 -2.39 -0.02 1.80 16 Total: -1.00 -71.12 378.93 0.32 -70.81 By element: Atomic # 1 Polarization: 36.62 SS G_CDS: -0.21 Total: 36.40 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: 5.99 Total: 6.21 kcal Atomic # 7 Polarization: -129.30 SS G_CDS: -7.42 Total: -136.72 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.06 Total: -24.35 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -71.12 0.32 -70.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666804384.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.462 kcal (2) G-P(sol) polarization free energy of solvation -71.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds