Wall clock time and date at job start Tue Mar 31 2020 22:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00048 * 2 1 4 4 C 1.50691 * 109.47427 * 179.97438 * 3 2 1 5 5 C 1.38347 * 119.86668 * 0.02562 * 4 3 2 6 6 C 1.37940 * 120.17799 * 180.02562 * 5 4 3 7 7 C 1.39602 * 119.90182 * 359.97438 * 6 5 4 8 8 C 1.47855 * 120.13098 * 179.97438 * 7 6 5 9 9 O 1.21545 * 119.99895 * 221.40614 * 8 7 6 10 10 N 1.34771 * 119.99620 * 41.40654 * 8 7 6 11 11 C 1.46501 * 120.00326 * 355.57314 * 10 8 7 12 12 C 1.46500 * 119.99930 * 175.57361 * 10 8 7 13 13 C 1.53001 * 109.47168 * 90.00150 * 12 10 8 14 14 H 1.09003 * 109.47317 * 60.00022 * 13 12 10 15 15 O 1.42896 * 109.47038 * 300.00118 * 13 12 10 16 16 C 1.53000 * 109.47218 * 180.02562 * 13 12 10 17 17 N 1.46495 * 109.47152 * 184.99622 * 16 13 12 18 18 C 1.36935 * 120.00065 * 179.72154 * 17 16 13 19 19 H 1.08003 * 120.00255 * 0.28657 * 18 17 16 20 20 C 1.38810 * 120.00169 * 180.27769 * 18 17 16 21 21 N 1.31627 * 120.00159 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00313 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47017 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47102 * 120.00060 * 22 20 18 25 25 H 1.48498 * 109.47351 * 240.00052 * 22 20 18 26 26 C 1.39529 * 119.73479 * 0.28321 * 7 6 5 27 27 C 1.38210 * 119.82629 * 359.43815 * 26 7 6 28 28 F 1.35099 * 119.95508 * 180.27369 * 27 26 7 29 29 H 1.09004 * 109.47004 * 299.99541 * 1 2 3 30 30 H 1.09000 * 109.47186 * 59.99681 * 1 2 3 31 31 H 1.08998 * 109.46873 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47279 * 59.99782 * 3 2 1 33 33 H 1.08999 * 109.47037 * 300.00240 * 3 2 1 34 34 H 1.08002 * 119.90877 * 0.02562 * 5 4 3 35 35 H 1.07996 * 120.05231 * 179.97438 * 6 5 4 36 36 H 1.08996 * 109.47716 * 275.16292 * 11 10 8 37 37 H 1.09000 * 109.47144 * 35.16421 * 11 10 8 38 38 H 1.09005 * 109.47354 * 155.16080 * 11 10 8 39 39 H 1.09003 * 109.47404 * 330.00302 * 12 10 8 40 40 H 1.09001 * 109.47284 * 209.99962 * 12 10 8 41 41 H 0.96702 * 114.00421 * 299.99881 * 15 13 12 42 42 H 1.09004 * 109.46854 * 65.00142 * 16 13 12 43 43 H 1.08991 * 109.47085 * 304.99988 * 16 13 12 44 44 H 0.97003 * 120.00033 * 0.02562 * 17 16 13 45 45 H 0.97001 * 120.00054 * 179.97438 * 21 20 18 46 46 H 1.08002 * 120.08258 * 179.69686 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.1046 -0.0638 0.0006 6 6 5.4791 -0.1801 0.0017 7 6 6.2746 0.9670 0.0023 8 6 7.7484 0.8482 0.0041 9 8 8.4167 1.5865 0.7009 10 7 8.3505 -0.0787 -0.7669 11 6 7.5430 -1.0319 -1.5321 12 6 9.8127 -0.1331 -0.8400 13 6 10.3435 -1.0660 0.2504 14 1 9.9349 -2.0659 0.1036 15 8 9.9485 -0.5736 1.5323 16 6 11.8705 -1.1223 0.1745 17 7 12.3714 -2.1053 1.1384 18 6 13.7172 -2.3337 1.2467 19 1 14.4098 -1.7860 0.6248 20 6 14.1915 -3.2693 2.1560 21 7 13.3475 -3.9371 2.9138 22 14 16.0274 -3.5805 2.3042 23 1 16.7561 -2.7076 1.3490 24 1 16.4707 -3.2770 3.6886 25 1 16.3150 -5.0038 1.9932 26 6 5.6733 2.2261 0.0079 27 6 4.2952 2.3298 0.0009 28 9 3.7103 3.5476 0.0006 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.4890 -0.9512 -0.0004 35 1 5.9392 -1.1572 0.0020 36 1 7.2810 -1.8782 -0.8971 37 1 6.6330 -0.5418 -1.8780 38 1 8.1142 -1.3852 -2.3907 39 1 10.2213 0.8668 -0.6931 40 1 10.1140 -0.5087 -1.8178 41 1 10.2773 0.3138 1.7313 42 1 12.2824 -0.1408 0.4093 43 1 12.1739 -1.4126 -0.8313 44 1 11.7495 -2.5974 1.6969 45 1 13.6789 -4.5911 3.5489 46 1 6.2834 3.1173 0.0133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677133861.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:52 Heat of formation + Delta-G solvation = -123.209687 kcal Electronic energy + Delta-G solvation = -29133.089951 eV Core-core repulsion = 24745.491520 eV Total energy + Delta-G solvation = -4387.598431 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.29804 -40.65038 -39.16755 -37.94475 -37.11177 -35.40627 -33.96195 -32.67608 -31.33564 -31.00678 -29.48571 -27.98156 -27.05872 -26.41036 -25.14450 -23.20859 -22.92389 -22.15340 -21.13252 -19.97926 -18.05242 -17.41834 -17.12962 -16.93095 -16.63780 -16.50331 -16.32908 -15.93590 -15.81603 -15.71975 -15.18620 -14.88077 -14.65035 -14.37137 -14.02436 -13.77241 -13.49785 -13.45469 -13.38041 -13.09379 -12.95169 -12.70878 -12.40022 -12.37226 -12.10275 -11.98690 -11.77594 -11.58724 -11.42169 -10.91369 -10.81077 -10.64446 -10.40250 -10.10202 -10.03745 -9.74671 -9.58682 -9.32657 -9.00277 -8.87289 -8.54477 -6.88804 -5.72227 -3.01511 0.42167 0.80980 2.53344 2.78693 3.08521 3.26045 3.45468 3.50562 3.53256 3.83923 4.10625 4.35474 4.45423 4.59343 4.63926 4.72203 4.77265 4.83481 4.87399 4.93540 4.95221 5.00591 5.02717 5.16894 5.19768 5.33865 5.37194 5.48234 5.55489 5.59778 5.66205 5.68252 5.75081 5.82469 5.90891 6.02749 6.24952 6.37561 6.43437 6.55412 6.57083 6.77321 7.21780 7.71989 8.04108 8.25628 8.46140 9.57356 10.15687 10.51217 11.50266 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023434 B = 0.001947 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.536283 B =14381.215019 C =14893.060007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.104 3.896 4 C -0.108 4.108 5 C -0.075 4.075 6 C -0.101 4.101 7 C -0.093 4.093 8 C 0.564 3.436 9 O -0.521 6.521 10 N -0.601 5.601 11 C 0.070 3.930 12 C 0.085 3.915 13 C 0.086 3.914 14 H 0.096 0.904 15 O -0.547 6.547 16 C 0.126 3.874 17 N -0.725 5.725 18 C -0.241 4.241 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.930 5.930 22 Si 0.908 3.092 23 H -0.281 1.281 24 H -0.291 1.291 25 H -0.292 1.292 26 C -0.101 4.101 27 C 0.097 3.903 28 F -0.135 7.135 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.375 0.625 42 H 0.021 0.979 43 H 0.024 0.976 44 H 0.388 0.612 45 H 0.254 0.746 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.598 10.565 -12.146 31.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.028 3.972 4 C -0.109 4.109 5 C -0.093 4.093 6 C -0.119 4.119 7 C -0.096 4.096 8 C 0.351 3.649 9 O -0.397 6.397 10 N -0.333 5.333 11 C -0.073 4.073 12 C -0.038 4.038 13 C 0.025 3.975 14 H 0.114 0.886 15 O -0.352 6.352 16 C -0.003 4.003 17 N -0.370 5.370 18 C -0.373 4.373 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.578 5.578 22 Si 0.739 3.261 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.121 4.121 27 C 0.077 3.923 28 F -0.114 7.114 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.166 0.834 35 H 0.162 0.838 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.222 0.778 42 H 0.039 0.961 43 H 0.042 0.958 44 H 0.223 0.777 45 H 0.064 0.936 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -27.254 10.270 -11.781 31.417 hybrid contribution 0.801 0.503 0.212 0.970 sum -26.453 10.773 -11.569 30.817 Atomic orbital electron populations 1.22787 0.80185 1.03241 1.00268 1.87834 1.20260 1.26831 1.95546 1.21129 0.89166 0.85458 1.01491 1.19835 0.94889 0.92950 1.03230 1.20861 0.94086 0.97073 0.97237 1.21748 0.93549 0.98803 0.97798 1.19776 0.93677 0.93454 1.02729 1.18072 0.86770 0.80311 0.79707 1.90772 1.65393 1.43857 1.39722 1.47559 1.06969 1.32693 1.46110 1.22157 0.96299 0.92691 0.96135 1.22350 0.78537 1.02354 1.00520 1.22487 0.94879 0.96992 0.83141 0.88624 1.86542 1.77373 1.37162 1.34166 1.21242 0.90930 0.93973 0.94142 1.42252 1.05093 1.45542 1.44104 1.19272 0.83589 1.17412 1.16980 0.91204 1.24768 0.97696 0.99472 0.99100 1.69697 1.32701 1.28721 1.26711 0.86109 0.85124 0.77525 0.77370 1.20583 1.21853 1.21881 1.21048 0.92458 0.98482 1.00099 1.17152 0.90670 0.79569 1.04883 1.91507 1.84384 1.41521 1.93990 0.93760 0.93797 0.89136 0.91289 0.91336 0.83352 0.83754 0.91899 0.90711 0.90513 0.89431 0.89356 0.77753 0.96107 0.95809 0.77748 0.93566 0.83634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.88 9.17 -35.23 -0.32 -3.21 16 3 C 0.10 0.74 5.90 36.00 0.21 0.95 16 4 C -0.11 -0.95 5.89 -104.47 -0.62 -1.57 16 5 C -0.07 -0.63 9.36 -39.65 -0.37 -1.01 16 6 C -0.10 -0.93 7.62 -39.18 -0.30 -1.23 16 7 C -0.09 -1.04 5.15 -104.97 -0.54 -1.59 16 8 C 0.56 7.66 6.90 -12.33 -0.09 7.58 16 9 O -0.52 -8.80 15.06 -7.93 -0.12 -8.92 16 10 N -0.60 -7.07 2.83 -182.69 -0.52 -7.58 16 11 C 0.07 0.57 8.96 59.85 0.54 1.10 16 12 C 0.09 1.09 5.18 -4.04 -0.02 1.07 16 13 C 0.09 1.43 3.27 -26.73 -0.09 1.34 16 14 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 15 O -0.55 -10.48 12.00 -48.49 -0.58 -11.06 16 16 C 0.13 2.53 5.90 -4.04 -0.02 2.51 16 17 N -0.73 -19.01 5.55 -59.91 -0.33 -19.34 16 18 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 19 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 21 N -0.93 -29.01 13.06 55.49 0.72 -28.29 16 22 Si 0.91 22.84 29.55 -169.99 -5.02 17.82 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 C -0.10 -1.09 9.63 -39.11 -0.38 -1.46 16 27 C 0.10 0.95 7.24 -39.48 -0.29 0.66 16 28 F -0.14 -1.34 16.79 2.25 0.04 -1.30 16 29 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.15 1.10 6.99 -52.49 -0.37 0.73 16 35 H 0.14 1.16 5.52 -52.49 -0.29 0.87 16 36 H 0.06 0.48 6.85 -51.93 -0.36 0.13 16 37 H 0.07 0.51 6.00 -51.93 -0.31 0.19 16 38 H 0.08 0.50 7.83 -51.93 -0.41 0.10 16 39 H 0.09 1.18 7.49 -51.93 -0.39 0.79 16 40 H 0.09 0.91 7.86 -51.93 -0.41 0.50 16 41 H 0.37 6.82 8.32 45.56 0.38 7.20 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.39 10.98 7.67 -40.82 -0.31 10.66 16 45 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 46 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 386.67 15.07 5.83 5.83 Total: -1.00 -35.39 386.67 -7.21 -42.60 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -5.81 Total: 11.43 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -1.09 Total: 2.02 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -0.12 Total: -55.22 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -1.02 Total: -23.18 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.39 -7.21 -42.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677133861.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.613 kcal (2) G-P(sol) polarization free energy of solvation -35.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds