Wall clock time and date at job start Tue Mar 31 2020 22:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00048 * 2 1 4 4 C 1.50691 * 109.47427 * 179.97438 * 3 2 1 5 5 C 1.38347 * 119.86668 * 0.02562 * 4 3 2 6 6 C 1.37940 * 120.17799 * 180.02562 * 5 4 3 7 7 C 1.39602 * 119.90182 * 359.97438 * 6 5 4 8 8 C 1.47855 * 120.13098 * 179.97438 * 7 6 5 9 9 O 1.21545 * 119.99895 * 221.40614 * 8 7 6 10 10 N 1.34771 * 119.99620 * 41.40654 * 8 7 6 11 11 C 1.46501 * 120.00326 * 355.57314 * 10 8 7 12 12 C 1.46500 * 119.99930 * 175.57361 * 10 8 7 13 13 C 1.53001 * 109.47168 * 90.00150 * 12 10 8 14 14 H 1.09003 * 109.47317 * 60.00022 * 13 12 10 15 15 O 1.42896 * 109.47038 * 300.00118 * 13 12 10 16 16 C 1.53000 * 109.47218 * 180.02562 * 13 12 10 17 17 N 1.46495 * 109.47152 * 184.99622 * 16 13 12 18 18 C 1.36935 * 120.00065 * 179.72154 * 17 16 13 19 19 H 1.08003 * 120.00255 * 0.28657 * 18 17 16 20 20 C 1.38810 * 120.00169 * 180.27769 * 18 17 16 21 21 N 1.31627 * 120.00159 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00313 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47017 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47102 * 120.00060 * 22 20 18 25 25 H 1.48498 * 109.47351 * 240.00052 * 22 20 18 26 26 C 1.39529 * 119.73479 * 0.28321 * 7 6 5 27 27 C 1.38210 * 119.82629 * 359.43815 * 26 7 6 28 28 F 1.35099 * 119.95508 * 180.27369 * 27 26 7 29 29 H 1.09004 * 109.47004 * 299.99541 * 1 2 3 30 30 H 1.09000 * 109.47186 * 59.99681 * 1 2 3 31 31 H 1.08998 * 109.46873 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47279 * 59.99782 * 3 2 1 33 33 H 1.08999 * 109.47037 * 300.00240 * 3 2 1 34 34 H 1.08002 * 119.90877 * 0.02562 * 5 4 3 35 35 H 1.07996 * 120.05231 * 179.97438 * 6 5 4 36 36 H 1.08996 * 109.47716 * 275.16292 * 11 10 8 37 37 H 1.09000 * 109.47144 * 35.16421 * 11 10 8 38 38 H 1.09005 * 109.47354 * 155.16080 * 11 10 8 39 39 H 1.09003 * 109.47404 * 330.00302 * 12 10 8 40 40 H 1.09001 * 109.47284 * 209.99962 * 12 10 8 41 41 H 0.96702 * 114.00421 * 299.99881 * 15 13 12 42 42 H 1.09004 * 109.46854 * 65.00142 * 16 13 12 43 43 H 1.08991 * 109.47085 * 304.99988 * 16 13 12 44 44 H 0.97003 * 120.00033 * 0.02562 * 17 16 13 45 45 H 0.97001 * 120.00054 * 179.97438 * 21 20 18 46 46 H 1.08002 * 120.08258 * 179.69686 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.1046 -0.0638 0.0006 6 6 5.4791 -0.1801 0.0017 7 6 6.2746 0.9670 0.0023 8 6 7.7484 0.8482 0.0041 9 8 8.4167 1.5865 0.7009 10 7 8.3505 -0.0787 -0.7669 11 6 7.5430 -1.0319 -1.5321 12 6 9.8127 -0.1331 -0.8400 13 6 10.3435 -1.0660 0.2504 14 1 9.9349 -2.0659 0.1036 15 8 9.9485 -0.5736 1.5323 16 6 11.8705 -1.1223 0.1745 17 7 12.3714 -2.1053 1.1384 18 6 13.7172 -2.3337 1.2467 19 1 14.4098 -1.7860 0.6248 20 6 14.1915 -3.2693 2.1560 21 7 13.3475 -3.9371 2.9138 22 14 16.0274 -3.5805 2.3042 23 1 16.7561 -2.7076 1.3490 24 1 16.4707 -3.2770 3.6886 25 1 16.3150 -5.0038 1.9932 26 6 5.6733 2.2261 0.0079 27 6 4.2952 2.3298 0.0009 28 9 3.7103 3.5476 0.0006 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.4890 -0.9512 -0.0004 35 1 5.9392 -1.1572 0.0020 36 1 7.2810 -1.8782 -0.8971 37 1 6.6330 -0.5418 -1.8780 38 1 8.1142 -1.3852 -2.3907 39 1 10.2213 0.8668 -0.6931 40 1 10.1140 -0.5087 -1.8178 41 1 10.2773 0.3138 1.7313 42 1 12.2824 -0.1408 0.4093 43 1 12.1739 -1.4126 -0.8313 44 1 11.7495 -2.5974 1.6969 45 1 13.6789 -4.5911 3.5489 46 1 6.2834 3.1173 0.0133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677133861.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:51 Heat of formation + Delta-G solvation = -148.568066 kcal Electronic energy + Delta-G solvation = -29134.189573 eV Core-core repulsion = 24745.491520 eV Total energy + Delta-G solvation = -4388.698053 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.05775 -41.56573 -39.95204 -38.79024 -38.24586 -36.52244 -35.86529 -33.46643 -33.14474 -31.88499 -30.81784 -28.67335 -28.03633 -27.18612 -26.34610 -24.68234 -23.77399 -23.17759 -22.55877 -20.90604 -19.23486 -18.92209 -18.19453 -17.71777 -17.52891 -17.34160 -17.13788 -16.79650 -16.56094 -16.53703 -16.41853 -16.35045 -16.00862 -15.39228 -15.26402 -15.01341 -14.70729 -14.37125 -14.22062 -14.10370 -13.91726 -13.82006 -13.69113 -13.36863 -12.99402 -12.96739 -12.80212 -12.71794 -12.51059 -12.45067 -12.13830 -12.11003 -11.99647 -11.81891 -11.20348 -10.99767 -10.93033 -10.83867 -10.07496 -9.74470 -9.59499 -9.01395 -7.95117 -5.24973 -0.35337 0.06142 1.46370 1.48287 1.58165 1.59958 1.87203 2.45496 2.55519 2.58948 3.08824 3.33472 3.37254 3.53929 3.67848 3.73550 3.78873 3.96040 4.06151 4.09869 4.20659 4.30500 4.32869 4.34009 4.47084 4.49741 4.55351 4.60208 4.60766 4.66920 4.73972 4.85012 4.89096 4.92232 4.93167 4.98563 5.13336 5.18158 5.25383 5.42510 5.48291 5.67658 6.12037 6.25884 6.28314 6.81136 7.06079 7.32135 8.08587 8.31189 9.28566 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023434 B = 0.001947 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.536283 B =14381.215019 C =14893.060007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.103 3.897 4 C -0.104 4.104 5 C -0.071 4.071 6 C -0.092 4.092 7 C -0.108 4.108 8 C 0.557 3.443 9 O -0.565 6.565 10 N -0.598 5.598 11 C 0.062 3.938 12 C 0.095 3.905 13 C 0.095 3.905 14 H 0.093 0.907 15 O -0.567 6.567 16 C 0.123 3.877 17 N -0.741 5.741 18 C -0.246 4.246 19 H 0.078 0.922 20 C -0.080 4.080 21 N -0.970 5.970 22 Si 0.977 3.023 23 H -0.264 1.264 24 H -0.295 1.295 25 H -0.291 1.291 26 C -0.110 4.110 27 C 0.091 3.909 28 F -0.137 7.137 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.164 0.836 35 H 0.157 0.843 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.122 0.878 41 H 0.376 0.624 42 H 0.021 0.979 43 H 0.043 0.957 44 H 0.374 0.626 45 H 0.251 0.749 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.650 10.302 -13.908 33.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.322 6.322 3 C 0.027 3.973 4 C -0.105 4.105 5 C -0.089 4.089 6 C -0.110 4.110 7 C -0.111 4.111 8 C 0.346 3.654 9 O -0.445 6.445 10 N -0.329 5.329 11 C -0.080 4.080 12 C -0.028 4.028 13 C 0.034 3.966 14 H 0.111 0.889 15 O -0.373 6.373 16 C -0.004 4.004 17 N -0.384 5.384 18 C -0.378 4.378 19 H 0.096 0.904 20 C -0.272 4.272 21 N -0.621 5.621 22 Si 0.806 3.194 23 H -0.188 1.188 24 H -0.223 1.223 25 H -0.218 1.218 26 C -0.129 4.129 27 C 0.071 3.929 28 F -0.116 7.116 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.119 0.881 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.181 0.819 35 H 0.175 0.825 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.140 0.860 41 H 0.224 0.776 42 H 0.039 0.961 43 H 0.061 0.939 44 H 0.205 0.795 45 H 0.060 0.940 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -28.329 10.023 -13.611 32.989 hybrid contribution 1.016 0.613 0.711 1.383 sum -27.314 10.636 -12.900 32.025 Atomic orbital electron populations 1.22971 0.78731 1.04242 1.01111 1.87794 1.21860 1.26852 1.95708 1.21175 0.87940 0.85769 1.02394 1.20088 0.96021 0.92618 1.01746 1.21029 0.93807 0.97489 0.96535 1.21868 0.93743 0.98609 0.96823 1.19641 0.92478 0.94303 1.04718 1.18507 0.87693 0.80028 0.79169 1.90740 1.66478 1.45631 1.41645 1.47644 1.06750 1.32760 1.45728 1.22442 0.96839 0.92160 0.96536 1.22174 0.79318 1.00948 1.00373 1.22445 0.92646 0.97846 0.83620 0.88945 1.86513 1.77542 1.37348 1.35853 1.21455 0.93294 0.92261 0.93394 1.42474 1.04231 1.46593 1.45089 1.19719 0.84989 1.16726 1.16377 0.90368 1.25656 1.02311 0.99877 0.99337 1.69863 1.34746 1.29729 1.27780 0.85014 0.79787 0.77400 0.77176 1.18792 1.22277 1.21771 1.21051 0.92998 0.98312 1.00584 1.17159 0.90389 0.79899 1.05425 1.91499 1.84304 1.41716 1.94071 0.93130 0.92753 0.88135 0.90645 0.90061 0.81868 0.82510 0.91278 0.89219 0.88378 0.90224 0.86026 0.77644 0.96143 0.93886 0.79454 0.94039 0.84334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 113.37 1.25 1.42 16 2 O -0.40 -5.15 9.17 -148.98 -1.37 -6.51 16 3 C 0.10 1.28 5.90 71.23 0.42 1.70 16 4 C -0.10 -1.67 5.89 -19.77 -0.12 -1.79 16 5 C -0.07 -1.07 9.36 22.22 0.21 -0.86 16 6 C -0.09 -1.56 7.62 22.53 0.17 -1.38 16 7 C -0.11 -2.38 5.15 -20.09 -0.10 -2.48 16 8 C 0.56 15.09 6.90 86.79 0.60 15.69 16 9 O -0.57 -19.66 15.06 8.82 0.13 -19.53 16 10 N -0.60 -13.26 2.83 -850.19 -2.40 -15.66 16 11 C 0.06 0.84 8.96 127.77 1.15 1.98 16 12 C 0.10 2.29 5.18 86.38 0.45 2.74 16 13 C 0.09 3.10 3.27 30.59 0.10 3.20 16 14 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 15 O -0.57 -22.05 12.00 -136.30 -1.64 -23.68 16 16 C 0.12 4.87 5.90 86.38 0.51 5.37 16 17 N -0.74 -39.02 5.55 -343.47 -1.91 -40.93 16 18 C -0.25 -14.11 9.99 84.03 0.84 -13.27 16 19 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 20 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 21 N -0.97 -61.54 13.06 21.65 0.28 -61.26 16 22 Si 0.98 47.09 29.55 68.60 2.03 49.12 16 23 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 25 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 26 C -0.11 -2.37 9.63 22.57 0.22 -2.15 16 27 C 0.09 1.72 7.24 22.34 0.16 1.88 16 28 F -0.14 -2.63 16.79 44.97 0.75 -1.87 16 29 H 0.05 0.28 8.14 -2.38 -0.02 0.26 16 30 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.16 2.01 6.99 -2.91 -0.02 1.99 16 35 H 0.16 2.20 5.52 -2.91 -0.02 2.19 16 36 H 0.07 0.89 6.85 -2.39 -0.02 0.87 16 37 H 0.09 0.98 6.00 -2.39 -0.01 0.96 16 38 H 0.10 0.94 7.83 -2.38 -0.02 0.93 16 39 H 0.08 2.08 7.49 -2.39 -0.02 2.07 16 40 H 0.12 2.12 7.86 -2.39 -0.02 2.10 16 41 H 0.38 14.16 8.32 -74.06 -0.62 13.54 16 42 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 43 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.37 21.54 7.67 -92.71 -0.71 20.83 16 45 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 46 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -76.98 386.67 1.90 -75.08 By element: Atomic # 1 Polarization: 37.75 SS G_CDS: -0.30 Total: 37.45 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 6.31 Total: 7.80 kcal Atomic # 7 Polarization: -113.82 SS G_CDS: -4.03 Total: -117.85 kcal Atomic # 8 Polarization: -46.86 SS G_CDS: -2.87 Total: -49.73 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.75 Total: -1.87 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -76.98 1.90 -75.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677133861.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.491 kcal (2) G-P(sol) polarization free energy of solvation -76.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds