Wall clock time and date at job start Tue Mar 31 2020 23:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00271 * 2 1 4 4 H 1.48497 * 109.47235 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47092 * 299.99802 * 3 2 1 6 6 H 1.48503 * 109.47065 * 59.99506 * 3 2 1 7 7 C 1.38819 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99995 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99909 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00042 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47433 * 180.02562 * 10 9 7 12 12 H 1.09007 * 110.43010 * 303.91608 * 11 10 9 13 13 C 1.54266 * 110.48569 * 66.45486 * 11 10 9 14 14 C 1.53869 * 106.59800 * 142.29400 * 13 11 10 15 15 C 1.54266 * 106.60031 * 359.97438 * 14 13 11 16 16 C 1.54894 * 104.31305 * 336.32486 * 15 14 13 17 17 H 1.08993 * 110.76071 * 279.69749 * 16 15 14 18 18 N 1.46498 * 110.75336 * 156.31761 * 16 15 14 19 19 C 1.34778 * 119.99570 * 86.45972 * 18 16 15 20 20 O 1.21545 * 120.00256 * 0.02562 * 19 18 16 21 21 C 1.47899 * 119.99905 * 179.97438 * 19 18 16 22 22 N 1.32133 * 120.03388 * 0.02562 * 21 19 18 23 23 C 1.31980 * 122.77100 * 179.97438 * 22 21 19 24 24 C 1.37778 * 121.72570 * 0.02562 * 23 22 21 25 25 C 1.40388 * 118.73071 * 359.97356 * 24 23 22 26 26 C 1.40636 * 122.27620 * 180.02562 * 25 24 23 27 27 C 1.36656 * 117.94906 * 179.25816 * 26 25 24 28 28 C 1.39391 * 119.91938 * 0.70720 * 27 26 25 29 29 N 1.31200 * 121.85938 * 359.51995 * 28 27 26 30 30 C 1.33266 * 121.22553 * 359.97139 * 29 28 27 31 31 H 0.96997 * 120.00153 * 0.02562 * 1 2 3 32 32 H 0.96999 * 120.00090 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.46879 * 59.99882 * 10 9 7 34 34 H 1.08994 * 109.47461 * 300.00087 * 10 9 7 35 35 H 1.08999 * 110.03060 * 23.00134 * 13 11 10 36 36 H 1.09003 * 110.02805 * 261.57399 * 13 11 10 37 37 H 1.09001 * 110.02983 * 240.71432 * 14 13 11 38 38 H 1.08995 * 110.03881 * 119.28625 * 14 13 11 39 39 H 1.09002 * 110.48629 * 95.07240 * 15 14 13 40 40 H 1.08998 * 110.48744 * 217.58143 * 15 14 13 41 41 H 0.97002 * 120.00493 * 266.45577 * 18 16 15 42 42 H 1.07996 * 119.13684 * 179.97438 * 23 22 21 43 43 H 1.08002 * 120.63447 * 179.97438 * 24 23 22 44 44 H 1.08002 * 121.02735 * 359.95955 * 26 25 24 45 45 H 1.07995 * 120.03527 * 180.20212 * 27 26 25 46 46 H 1.08004 * 119.07229 * 179.49497 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8198 -0.0001 12 1 0.3829 -4.7388 0.8473 13 6 0.2747 -4.8547 -1.3252 14 6 0.0921 -6.3386 -1.6890 15 6 0.7771 -7.1536 -0.5727 16 6 1.8168 -6.1772 0.0313 17 1 2.7134 -6.1364 -0.5870 18 7 2.1493 -6.5583 1.4062 19 6 3.1202 -7.4638 1.6384 20 8 3.7202 -7.9639 0.7071 21 6 3.4563 -7.8482 3.0264 22 7 2.8049 -7.3046 4.0394 23 6 3.0600 -7.6082 5.2982 24 6 4.0333 -8.5213 5.6404 25 6 4.7676 -9.1405 4.6165 26 6 5.7771 -10.0833 4.8809 27 6 6.4258 -10.6427 3.8161 28 6 6.0885 -10.2620 2.5183 29 7 5.1492 -9.3782 2.2779 30 6 4.4717 -8.8026 3.2707 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3880 0.0005 33 1 2.6847 -3.7145 0.8905 34 1 2.6847 -3.7146 -0.8894 35 1 0.8363 -4.3446 -2.1078 36 1 -0.6978 -4.3803 -1.1932 37 1 0.5652 -6.5487 -2.6483 38 1 -0.9689 -6.5843 -1.7338 39 1 0.0502 -7.4521 0.1827 40 1 1.2739 -8.0295 -0.9899 41 1 1.6708 -6.1589 2.1495 42 1 2.4914 -7.1276 6.0806 43 1 4.2277 -8.7563 6.6764 44 1 6.0242 -10.3651 5.8938 45 1 7.2043 -11.3729 3.9803 46 1 6.6156 -10.7068 1.6872 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699024962.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:59 Heat of formation + Delta-G solvation = 41.296289 kcal Electronic energy + Delta-G solvation = -28593.704228 eV Core-core repulsion = 24676.301288 eV Total energy + Delta-G solvation = -3917.402941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.62051 -39.65644 -38.36941 -37.68759 -34.38681 -34.05674 -33.47543 -31.82972 -31.33050 -30.86039 -28.48795 -27.60887 -25.65520 -24.50800 -24.40439 -23.57557 -22.06908 -21.01198 -20.24388 -19.60756 -18.86873 -17.88495 -17.86542 -17.04691 -16.41786 -16.29861 -15.51712 -15.19615 -14.80727 -14.68991 -14.58230 -14.42899 -14.24455 -13.71297 -13.50662 -13.50001 -13.16013 -13.05204 -12.94486 -12.80077 -12.59195 -12.04455 -11.85873 -11.20037 -11.13976 -10.86293 -10.84690 -10.67392 -10.43460 -10.32289 -10.31792 -10.17806 -10.05604 -9.86789 -9.73467 -9.64260 -9.39366 -8.89729 -8.81591 -8.69454 -6.84868 -5.71081 -2.98713 -0.41234 0.30968 1.30352 2.42334 3.04483 3.07370 3.46981 3.52827 3.55067 3.80087 3.82904 3.91232 4.07906 4.22472 4.34495 4.40654 4.61443 4.75218 4.81137 4.94346 4.95494 5.02187 5.13777 5.18770 5.24676 5.47767 5.55166 5.63152 5.66699 5.71886 5.75197 5.83580 5.91370 5.92531 6.04249 6.17709 6.17961 6.29487 6.37810 6.41076 6.59301 6.67209 6.71914 6.88096 7.01078 7.27977 7.52971 7.75043 7.76842 8.34441 8.48258 9.59539 10.18229 10.53576 11.52042 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012690 B = 0.002584 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.944570 B =10833.559605 C =11960.336610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.161 3.839 11 C -0.101 4.101 12 H 0.079 0.921 13 C -0.111 4.111 14 C -0.121 4.121 15 C -0.132 4.132 16 C 0.147 3.853 17 H 0.097 0.903 18 N -0.699 5.699 19 C 0.564 3.436 20 O -0.497 6.497 21 C 0.145 3.855 22 N -0.441 5.441 23 C 0.077 3.923 24 C -0.124 4.124 25 C -0.085 4.085 26 C -0.064 4.064 27 C -0.156 4.156 28 C 0.131 3.869 29 N -0.420 5.420 30 C 0.106 3.894 31 H 0.254 0.746 32 H 0.384 0.616 33 H 0.018 0.982 34 H 0.020 0.980 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.410 0.590 42 H 0.168 0.832 43 H 0.147 0.853 44 H 0.145 0.855 45 H 0.143 0.857 46 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.167 -25.575 11.289 29.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.366 4.366 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.033 3.967 11 C -0.120 4.120 12 H 0.098 0.902 13 C -0.149 4.149 14 C -0.160 4.160 15 C -0.171 4.171 16 C 0.042 3.958 17 H 0.115 0.885 18 N -0.351 5.351 19 C 0.347 3.653 20 O -0.369 6.369 21 C -0.008 4.008 22 N -0.153 5.153 23 C -0.069 4.069 24 C -0.145 4.145 25 C -0.092 4.092 26 C -0.090 4.090 27 C -0.177 4.177 28 C -0.043 4.043 29 N -0.127 5.127 30 C -0.019 4.019 31 H 0.063 0.937 32 H 0.217 0.783 33 H 0.036 0.964 34 H 0.038 0.962 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.246 0.754 42 H 0.185 0.815 43 H 0.164 0.836 44 H 0.163 0.837 45 H 0.161 0.839 46 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 7.772 -24.858 9.666 27.780 hybrid contribution 0.820 0.322 1.693 1.908 sum 8.592 -24.536 11.359 28.370 Atomic orbital electron populations 1.69667 1.05054 1.25400 1.58213 1.24720 0.95517 0.97597 1.03301 0.86133 0.78821 0.84247 0.77130 1.20604 1.21915 1.21951 1.19286 0.91050 0.84227 1.42036 0.91254 1.42336 1.05846 0.99886 1.89401 1.20690 0.92953 0.85189 0.97867 1.22466 0.97503 0.93243 0.98829 0.90247 1.22060 1.00741 0.95241 0.96900 1.22095 1.00149 0.95535 0.98178 1.22706 0.97862 0.98276 0.98232 1.22136 0.98179 0.93712 0.81759 0.88507 1.45853 1.37217 1.42414 1.09607 1.17557 0.80787 0.80510 0.86455 1.90854 1.50666 1.52783 1.42605 1.21585 0.92156 0.92944 0.94118 1.67381 1.24968 1.22846 1.00146 1.22629 0.96029 0.95425 0.92787 1.22400 0.95773 0.96577 0.99754 1.18981 0.97791 0.98342 0.94085 1.21426 0.93368 0.93796 1.00405 1.22137 1.00894 1.00854 0.93826 1.23348 0.92571 0.92040 0.96360 1.68320 1.04747 1.06209 1.33468 1.19483 0.96496 0.96901 0.89035 0.93660 0.78251 0.96411 0.96194 0.90919 0.91279 0.91902 0.91971 0.91590 0.91462 0.75428 0.81477 0.83567 0.83715 0.83895 0.81728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.61 13.06 55.49 0.72 -27.89 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 7 C -0.23 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -18.83 5.44 -59.91 -0.33 -19.16 16 10 C 0.16 3.37 5.58 -4.04 -0.02 3.35 16 11 C -0.10 -1.69 2.55 -88.76 -0.23 -1.91 16 12 H 0.08 1.33 8.03 -51.93 -0.42 0.91 16 13 C -0.11 -1.76 6.05 -25.62 -0.15 -1.92 16 14 C -0.12 -1.59 6.80 -25.62 -0.17 -1.76 16 15 C -0.13 -1.77 6.50 -25.07 -0.16 -1.94 16 16 C 0.15 2.23 2.62 -65.73 -0.17 2.06 16 17 H 0.10 1.62 7.63 -51.93 -0.40 1.22 16 18 N -0.70 -10.33 5.20 -52.61 -0.27 -10.60 16 19 C 0.56 9.01 7.81 -12.30 -0.10 8.92 16 20 O -0.50 -9.14 14.94 5.33 0.08 -9.06 16 21 C 0.15 2.06 6.81 -82.55 -0.56 1.50 16 22 N -0.44 -5.45 9.48 -9.55 -0.09 -5.54 16 23 C 0.08 0.70 11.12 -17.66 -0.20 0.50 16 24 C -0.12 -0.94 9.93 -38.94 -0.39 -1.32 16 25 C -0.08 -0.81 5.75 -106.79 -0.61 -1.43 16 26 C -0.06 -0.42 9.94 -39.25 -0.39 -0.81 16 27 C -0.16 -0.96 10.03 -39.72 -0.40 -1.36 16 28 C 0.13 1.17 11.14 -17.39 -0.19 0.98 16 29 N -0.42 -5.66 8.49 -10.75 -0.09 -5.75 16 30 C 0.11 1.39 6.61 -84.62 -0.56 0.83 16 31 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.38 10.29 7.52 -40.82 -0.31 9.98 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.02 0.44 8.05 -51.93 -0.42 0.02 16 35 H 0.07 1.25 7.77 -51.93 -0.40 0.85 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.41 5.68 7.88 -40.82 -0.32 5.36 16 42 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 44 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16 45 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 46 H 0.17 1.01 8.06 -52.48 -0.42 0.58 16 LS Contribution 384.39 15.07 5.79 5.79 Total: -1.00 -35.82 384.39 -10.23 -46.05 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -6.46 Total: 10.06 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -4.56 Total: -1.76 kcal Atomic # 7 Polarization: -68.89 SS G_CDS: -0.06 Total: -68.94 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.08 Total: -9.06 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.82 -10.23 -46.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699024962.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.342 kcal (2) G-P(sol) polarization free energy of solvation -35.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds