Wall clock time and date at job start Tue Mar 31 2020 23:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00271 * 2 1 4 4 H 1.48497 * 109.47235 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47092 * 299.99802 * 3 2 1 6 6 H 1.48503 * 109.47065 * 59.99506 * 3 2 1 7 7 C 1.38819 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99995 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99909 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00042 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47433 * 180.02562 * 10 9 7 12 12 H 1.09007 * 110.43010 * 303.91608 * 11 10 9 13 13 C 1.54266 * 110.48569 * 66.45486 * 11 10 9 14 14 C 1.53869 * 106.59800 * 142.29400 * 13 11 10 15 15 C 1.54266 * 106.60031 * 359.97438 * 14 13 11 16 16 C 1.54894 * 104.31305 * 336.32486 * 15 14 13 17 17 H 1.08993 * 110.76071 * 279.69749 * 16 15 14 18 18 N 1.46498 * 110.75336 * 156.31761 * 16 15 14 19 19 C 1.34778 * 119.99570 * 86.45972 * 18 16 15 20 20 O 1.21545 * 120.00256 * 0.02562 * 19 18 16 21 21 C 1.47899 * 119.99905 * 179.97438 * 19 18 16 22 22 N 1.32133 * 120.03388 * 0.02562 * 21 19 18 23 23 C 1.31980 * 122.77100 * 179.97438 * 22 21 19 24 24 C 1.37778 * 121.72570 * 0.02562 * 23 22 21 25 25 C 1.40388 * 118.73071 * 359.97356 * 24 23 22 26 26 C 1.40636 * 122.27620 * 180.02562 * 25 24 23 27 27 C 1.36656 * 117.94906 * 179.25816 * 26 25 24 28 28 C 1.39391 * 119.91938 * 0.70720 * 27 26 25 29 29 N 1.31200 * 121.85938 * 359.51995 * 28 27 26 30 30 C 1.33266 * 121.22553 * 359.97139 * 29 28 27 31 31 H 0.96997 * 120.00153 * 0.02562 * 1 2 3 32 32 H 0.96999 * 120.00090 * 359.97438 * 9 7 2 33 33 H 1.09002 * 109.46879 * 59.99882 * 10 9 7 34 34 H 1.08994 * 109.47461 * 300.00087 * 10 9 7 35 35 H 1.08999 * 110.03060 * 23.00134 * 13 11 10 36 36 H 1.09003 * 110.02805 * 261.57399 * 13 11 10 37 37 H 1.09001 * 110.02983 * 240.71432 * 14 13 11 38 38 H 1.08995 * 110.03881 * 119.28625 * 14 13 11 39 39 H 1.09002 * 110.48629 * 95.07240 * 15 14 13 40 40 H 1.08998 * 110.48744 * 217.58143 * 15 14 13 41 41 H 0.97002 * 120.00493 * 266.45577 * 18 16 15 42 42 H 1.07996 * 119.13684 * 179.97438 * 23 22 21 43 43 H 1.08002 * 120.63447 * 179.97438 * 24 23 22 44 44 H 1.08002 * 121.02735 * 359.95955 * 26 25 24 45 45 H 1.07995 * 120.03527 * 180.20212 * 27 26 25 46 46 H 1.08004 * 119.07229 * 179.49497 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8198 -0.0001 12 1 0.3829 -4.7388 0.8473 13 6 0.2747 -4.8547 -1.3252 14 6 0.0921 -6.3386 -1.6890 15 6 0.7771 -7.1536 -0.5727 16 6 1.8168 -6.1772 0.0313 17 1 2.7134 -6.1364 -0.5870 18 7 2.1493 -6.5583 1.4062 19 6 3.1202 -7.4638 1.6384 20 8 3.7202 -7.9639 0.7071 21 6 3.4563 -7.8482 3.0264 22 7 2.8049 -7.3046 4.0394 23 6 3.0600 -7.6082 5.2982 24 6 4.0333 -8.5213 5.6404 25 6 4.7676 -9.1405 4.6165 26 6 5.7771 -10.0833 4.8809 27 6 6.4258 -10.6427 3.8161 28 6 6.0885 -10.2620 2.5183 29 7 5.1492 -9.3782 2.2779 30 6 4.4717 -8.8026 3.2707 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3880 0.0005 33 1 2.6847 -3.7145 0.8905 34 1 2.6847 -3.7146 -0.8894 35 1 0.8363 -4.3446 -2.1078 36 1 -0.6978 -4.3803 -1.1932 37 1 0.5652 -6.5487 -2.6483 38 1 -0.9689 -6.5843 -1.7338 39 1 0.0502 -7.4521 0.1827 40 1 1.2739 -8.0295 -0.9899 41 1 1.6708 -6.1589 2.1495 42 1 2.4914 -7.1276 6.0806 43 1 4.2277 -8.7563 6.6764 44 1 6.0242 -10.3651 5.8938 45 1 7.2043 -11.3729 3.9803 46 1 6.6156 -10.7068 1.6872 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699024962.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:58 Heat of formation + Delta-G solvation = 16.154859 kcal Electronic energy + Delta-G solvation = -28594.794443 eV Core-core repulsion = 24676.301288 eV Total energy + Delta-G solvation = -3918.493155 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.35312 -40.81594 -39.24951 -38.83993 -36.31139 -34.85204 -34.60896 -33.31710 -32.49564 -31.59779 -30.19956 -28.77582 -26.58292 -26.15051 -25.11730 -24.54530 -23.80622 -22.00905 -21.54155 -20.77950 -19.75873 -19.26552 -18.63782 -18.54461 -17.49208 -17.26177 -16.65973 -16.45325 -16.08595 -15.81155 -15.59971 -15.32349 -15.29453 -15.11109 -14.99184 -14.82655 -14.39746 -14.16653 -14.01064 -13.75266 -13.51746 -13.18143 -13.13626 -13.11507 -12.83246 -12.33787 -12.12557 -12.06799 -11.91510 -11.81822 -11.67763 -11.60815 -11.35667 -11.26232 -10.98121 -10.95556 -10.38105 -10.20313 -10.05107 -9.47757 -9.01237 -7.96331 -5.24990 -1.12090 -0.34270 0.63721 1.45681 1.46528 1.56907 1.62805 2.00280 2.16881 2.54383 3.02380 3.05368 3.20235 3.36303 3.40518 3.46619 3.65036 3.66727 3.72282 3.87469 3.94039 4.16120 4.22638 4.26998 4.41075 4.46127 4.46953 4.49324 4.52267 4.58324 4.64221 4.66157 4.71151 4.94527 4.95081 5.01542 5.10598 5.13998 5.21127 5.24078 5.30011 5.32753 5.45805 5.49374 5.59054 5.61692 6.26010 6.40904 6.64551 6.92809 7.19308 7.32780 8.06811 8.33625 9.27186 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012690 B = 0.002584 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.944570 B =10833.559605 C =11960.336610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.072 4.072 3 Si 0.973 3.027 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.247 4.247 8 H 0.068 0.932 9 N -0.738 5.738 10 C 0.164 3.836 11 C -0.090 4.090 12 H 0.082 0.918 13 C -0.109 4.109 14 C -0.110 4.110 15 C -0.122 4.122 16 C 0.153 3.847 17 H 0.077 0.923 18 N -0.697 5.697 19 C 0.561 3.439 20 O -0.534 6.534 21 C 0.096 3.904 22 N -0.453 5.453 23 C 0.053 3.947 24 C -0.089 4.089 25 C -0.106 4.106 26 C -0.051 4.051 27 C -0.153 4.153 28 C 0.128 3.872 29 N -0.484 5.484 30 C 0.083 3.917 31 H 0.252 0.748 32 H 0.377 0.623 33 H 0.009 0.991 34 H 0.013 0.987 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.413 0.587 42 H 0.198 0.802 43 H 0.196 0.804 44 H 0.191 0.809 45 H 0.186 0.814 46 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.425 -27.435 13.989 32.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.802 3.198 4 H -0.195 1.195 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.379 4.379 8 H 0.086 0.914 9 N -0.381 5.381 10 C 0.037 3.963 11 C -0.109 4.109 12 H 0.100 0.900 13 C -0.147 4.147 14 C -0.148 4.148 15 C -0.161 4.161 16 C 0.047 3.953 17 H 0.095 0.905 18 N -0.348 5.348 19 C 0.346 3.654 20 O -0.409 6.409 21 C -0.055 4.055 22 N -0.166 5.166 23 C -0.094 4.094 24 C -0.109 4.109 25 C -0.113 4.113 26 C -0.076 4.076 27 C -0.173 4.173 28 C -0.045 4.045 29 N -0.193 5.193 30 C -0.041 4.041 31 H 0.061 0.939 32 H 0.209 0.791 33 H 0.027 0.973 34 H 0.031 0.969 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.250 0.750 42 H 0.215 0.785 43 H 0.213 0.787 44 H 0.208 0.792 45 H 0.203 0.797 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 9.043 -26.737 12.361 30.813 hybrid contribution 0.562 0.782 0.981 1.375 sum 9.605 -25.955 13.342 30.723 Atomic orbital electron populations 1.69811 1.06440 1.26068 1.59340 1.25535 0.96455 1.00918 1.03540 0.85085 0.78038 0.79821 0.76882 1.19508 1.21737 1.21695 1.19618 0.91283 0.85546 1.41466 0.91362 1.42464 1.05636 1.00744 1.89266 1.20738 0.93587 0.85098 0.96840 1.22308 0.96687 0.92232 0.99656 0.89979 1.22004 0.99846 0.97229 0.95626 1.22039 1.01529 0.93005 0.98270 1.22627 0.97323 0.97654 0.98452 1.21970 0.97711 0.93399 0.82173 0.90502 1.45816 1.37275 1.42381 1.09359 1.17981 0.80073 0.79846 0.87513 1.90800 1.51878 1.54164 1.44059 1.21218 0.95024 0.96007 0.93259 1.67265 1.25084 1.22956 1.01281 1.23242 0.97453 0.96678 0.92063 1.22957 0.92924 0.93526 1.01489 1.19374 0.99313 0.99672 0.92958 1.21990 0.91283 0.91689 1.02647 1.22536 1.01412 1.01100 0.92270 1.23914 0.91186 0.90580 0.98815 1.68247 1.07200 1.08822 1.35020 1.19650 0.96536 0.97051 0.90859 0.93870 0.79051 0.97297 0.96906 0.92721 0.91712 0.91004 0.89873 0.90552 0.91522 0.75036 0.78510 0.78672 0.79158 0.79673 0.80003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.07 13.06 21.65 0.28 -59.78 16 2 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 3 Si 0.97 47.52 29.55 68.60 2.03 49.55 16 4 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 6 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 7 C -0.25 -14.49 9.99 84.04 0.84 -13.65 16 8 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.74 -39.31 5.44 -343.45 -1.87 -41.17 16 10 C 0.16 7.21 5.58 86.38 0.48 7.69 16 11 C -0.09 -3.11 2.55 -9.59 -0.02 -3.13 16 12 H 0.08 2.82 8.03 -2.38 -0.02 2.80 16 13 C -0.11 -3.52 6.05 31.32 0.19 -3.33 16 14 C -0.11 -2.82 6.80 31.32 0.21 -2.61 16 15 C -0.12 -3.29 6.50 31.67 0.21 -3.09 16 16 C 0.15 4.88 2.62 46.42 0.12 5.00 16 17 H 0.08 2.77 7.63 -2.39 -0.02 2.75 16 18 N -0.70 -22.01 5.20 -438.64 -2.28 -24.29 16 19 C 0.56 19.41 7.81 86.80 0.68 20.09 16 20 O -0.53 -21.36 14.94 -3.86 -0.06 -21.42 16 21 C 0.10 2.88 6.81 42.46 0.29 3.17 16 22 N -0.45 -11.47 9.48 -184.14 -1.75 -13.22 16 23 C 0.05 0.87 11.12 84.56 0.94 1.81 16 24 C -0.09 -1.04 9.93 22.68 0.23 -0.81 16 25 C -0.11 -1.80 5.75 -21.27 -0.12 -1.92 16 26 C -0.05 -0.45 9.94 22.48 0.22 -0.23 16 27 C -0.15 -1.38 10.03 22.18 0.22 -1.15 16 28 C 0.13 2.22 11.14 85.07 0.95 3.17 16 29 N -0.48 -13.64 8.49 -187.91 -1.60 -15.24 16 30 C 0.08 2.25 6.61 40.62 0.27 2.52 16 31 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 32 H 0.38 20.88 7.52 -92.71 -0.70 20.18 16 33 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.01 0.59 8.05 -2.39 -0.02 0.57 16 35 H 0.05 1.95 7.77 -2.39 -0.02 1.93 16 36 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.41 12.22 7.88 -92.71 -0.73 11.49 16 42 H 0.20 1.80 8.06 -2.91 -0.02 1.77 16 43 H 0.20 0.27 8.06 -2.91 -0.02 0.25 16 44 H 0.19 -0.08 8.06 -2.91 -0.02 -0.10 16 45 H 0.19 0.05 8.06 -2.91 -0.02 0.02 16 46 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -83.13 384.39 0.52 -82.61 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: -0.41 Total: 33.24 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 6.17 Total: 9.72 kcal Atomic # 7 Polarization: -146.50 SS G_CDS: -7.21 Total: -153.71 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.06 Total: -21.42 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -83.13 0.52 -82.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699024962.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.768 kcal (2) G-P(sol) polarization free energy of solvation -83.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds