Wall clock time and date at job start Tue Mar 31 2020 23:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 120.00336 * 2 1 4 4 H 1.48498 * 109.47104 * 270.00900 * 3 2 1 5 5 H 1.48504 * 109.46579 * 30.00415 * 3 2 1 6 6 H 1.48494 * 109.46770 * 150.00692 * 3 2 1 7 7 C 1.38821 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99670 * 359.97438 * 7 2 1 9 9 N 1.36930 * 119.99787 * 179.97438 * 7 2 1 10 10 C 1.46502 * 119.99999 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47465 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.66933 * 56.77858 * 11 10 9 13 13 C 1.54891 * 110.75305 * 293.54734 * 11 10 9 14 14 C 1.54270 * 104.19065 * 203.55595 * 13 11 10 15 15 C 1.53874 * 106.60197 * 23.61292 * 14 13 11 16 16 H 1.09002 * 110.03457 * 119.33146 * 15 14 13 17 17 N 1.46494 * 110.03206 * 240.71481 * 15 14 13 18 18 C 1.34780 * 119.99959 * 272.90951 * 17 15 14 19 19 O 1.21550 * 120.00078 * 359.97438 * 18 17 15 20 20 C 1.47864 * 120.00067 * 180.02562 * 18 17 15 21 21 C 1.40614 * 119.75459 * 359.97438 * 20 18 17 22 22 C 1.35735 * 120.83341 * 180.02562 * 21 20 18 23 23 C 1.40707 * 120.08346 * 359.97438 * 22 21 20 24 24 N 1.33792 * 120.85132 * 180.02562 * 23 22 21 25 25 C 1.31335 * 119.75842 * 179.97438 * 24 23 22 26 26 C 1.39752 * 120.70908 * 359.97438 * 25 24 23 27 27 N 1.31279 * 120.68030 * 359.97438 * 26 25 24 28 28 C 1.33828 * 119.73287 * 0.02562 * 27 26 25 29 29 C 1.38412 * 119.75351 * 179.97438 * 20 18 17 30 30 C 1.54263 * 106.63779 * 0.02562 * 15 14 13 31 31 H 0.97004 * 119.99626 * 359.97438 * 1 2 3 32 32 H 0.96996 * 120.00600 * 359.97438 * 9 7 2 33 33 H 1.09001 * 109.47025 * 59.99628 * 10 9 7 34 34 H 1.09000 * 109.46716 * 300.00558 * 10 9 7 35 35 H 1.08998 * 110.48878 * 84.88327 * 13 11 10 36 36 H 1.08997 * 110.59907 * 322.28672 * 13 11 10 37 37 H 1.08996 * 110.03330 * 264.31940 * 14 13 11 38 38 H 1.09004 * 110.06994 * 142.92101 * 14 13 11 39 39 H 0.96998 * 120.00364 * 92.90015 * 17 15 14 40 40 H 1.08004 * 119.58489 * 0.02562 * 21 20 18 41 41 H 1.08005 * 119.95363 * 179.69897 * 22 21 20 42 42 H 1.08002 * 119.64531 * 179.97438 * 25 24 23 43 43 H 1.08001 * 119.66118 * 179.97438 * 26 25 24 44 44 H 1.08004 * 120.25213 * 359.97438 * 29 20 18 45 45 H 1.09000 * 110.48737 * 95.04547 * 30 15 14 46 46 H 1.09000 * 110.48749 * 217.68915 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7002 6 1 3.5479 1.4399 0.6999 7 6 2.0103 -1.2023 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.6163 -2.1915 -0.0011 12 1 5.8925 -1.5719 0.8521 13 6 6.0502 -1.5223 -1.3289 14 6 7.5521 -1.8543 -1.4465 15 6 7.7899 -3.1200 -0.6044 16 1 8.1660 -3.9242 -1.2369 17 7 8.7465 -2.8366 0.4683 18 6 10.0696 -2.9532 0.2395 19 8 10.4692 -3.2940 -0.8567 20 6 11.0352 -2.6677 1.3224 21 6 10.5673 -2.2744 2.5888 22 6 11.4342 -2.0065 3.5983 23 6 12.8205 -2.1209 3.3866 24 7 13.6887 -1.8611 4.3709 25 6 14.9782 -1.9753 4.1497 26 6 15.4554 -2.3664 2.8957 27 7 14.6237 -2.6278 1.9142 28 6 13.3050 -2.5187 2.1148 29 6 12.3928 -2.7896 1.0820 30 6 6.4246 -3.5143 -0.0044 31 1 -0.4850 0.8401 0.0004 32 1 3.8646 -0.3623 -0.0014 33 1 3.8483 -3.0428 -0.8908 34 1 3.8490 -3.0424 0.8891 35 1 5.9007 -0.4438 -1.2792 36 1 5.4992 -1.9447 -2.1691 37 1 8.1485 -1.0292 -1.0572 38 1 7.8128 -2.0442 -2.4878 39 1 8.4278 -2.5649 1.3432 40 1 9.5048 -2.1844 2.7604 41 1 11.0595 -1.7008 4.5640 42 1 15.6774 -1.7647 4.9454 43 1 16.5194 -2.4544 2.7324 44 1 12.7479 -3.0924 0.1079 45 1 5.9340 -4.2600 -0.6299 46 1 6.5483 -3.8890 1.0117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700934975.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:34 Heat of formation + Delta-G solvation = 41.252563 kcal Electronic energy + Delta-G solvation = -27818.388225 eV Core-core repulsion = 23900.983388 eV Total energy + Delta-G solvation = -3917.404837 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.95666 -40.39616 -38.45434 -37.35639 -35.35689 -35.04021 -33.55881 -31.70037 -31.13273 -31.12605 -29.11302 -28.19131 -26.08593 -25.07906 -24.50196 -22.93397 -21.99255 -21.77030 -20.32065 -19.88712 -19.29698 -18.78155 -17.66959 -17.55208 -16.86428 -16.42660 -15.72947 -15.35468 -15.20725 -14.96248 -14.82947 -14.56104 -14.49944 -14.31775 -14.11922 -13.44626 -13.33518 -13.02463 -12.65279 -12.44795 -12.35607 -12.29378 -12.27169 -12.20848 -11.93014 -11.67468 -11.25303 -10.98571 -10.89335 -10.56838 -10.44320 -10.37163 -10.27295 -10.06652 -9.68241 -9.60476 -9.59094 -9.31226 -9.11936 -8.89871 -7.22907 -5.77451 -3.12482 -0.47977 -0.13600 1.28902 1.83802 2.74395 2.85030 3.35575 3.38408 3.43669 3.44025 3.49557 3.58088 3.68031 4.15017 4.25816 4.31884 4.46394 4.51699 4.57418 4.58790 4.62851 4.81240 4.90281 5.13608 5.28374 5.30973 5.41214 5.45875 5.50488 5.52456 5.54842 5.58448 5.67035 5.70923 5.74618 5.87153 5.96442 5.97324 5.99897 6.15514 6.31107 6.40069 6.46353 6.66764 6.67460 6.79294 7.13301 7.18654 7.86861 7.99315 8.41846 9.21356 9.93763 10.13857 11.41078 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018819 B = 0.001992 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.479927 B =14050.670179 C =14841.458887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.755 5.755 10 C 0.165 3.835 11 C -0.103 4.103 12 H 0.074 0.926 13 C -0.116 4.116 14 C -0.133 4.133 15 C 0.141 3.859 16 H 0.092 0.908 17 N -0.713 5.713 18 C 0.557 3.443 19 O -0.530 6.530 20 C -0.114 4.114 21 C -0.074 4.074 22 C -0.084 4.084 23 C 0.093 3.907 24 N -0.427 5.427 25 C 0.085 3.915 26 C 0.075 3.925 27 N -0.416 5.416 28 C 0.068 3.932 29 C -0.013 4.013 30 C -0.123 4.123 31 H 0.259 0.741 32 H 0.360 0.640 33 H 0.028 0.972 34 H 0.026 0.974 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.400 0.600 40 H 0.141 0.859 41 H 0.148 0.852 42 H 0.178 0.822 43 H 0.178 0.822 44 H 0.156 0.844 45 H 0.086 0.914 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.082 -6.276 7.650 33.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.037 3.963 11 C -0.121 4.121 12 H 0.092 0.908 13 C -0.153 4.153 14 C -0.172 4.172 15 C 0.037 3.963 16 H 0.110 0.890 17 N -0.365 5.365 18 C 0.344 3.656 19 O -0.408 6.408 20 C -0.119 4.119 21 C -0.094 4.094 22 C -0.104 4.104 23 C -0.031 4.031 24 N -0.141 5.141 25 C -0.091 4.091 26 C -0.101 4.101 27 N -0.130 5.130 28 C -0.055 4.055 29 C -0.033 4.033 30 C -0.161 4.161 31 H 0.069 0.931 32 H 0.193 0.807 33 H 0.046 0.954 34 H 0.043 0.957 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.236 0.764 40 H 0.159 0.841 41 H 0.166 0.834 42 H 0.195 0.805 43 H 0.195 0.805 44 H 0.173 0.827 45 H 0.104 0.896 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 31.858 -6.634 6.756 33.235 hybrid contribution 0.499 1.490 0.564 1.670 sum 32.357 -5.144 7.320 33.571 Atomic orbital electron populations 1.69705 1.05094 1.25776 1.57693 1.24681 0.95240 0.97190 1.02159 0.86546 0.79154 0.85029 0.77782 1.21076 1.21768 1.20411 1.19070 0.80730 0.94698 1.42818 0.89262 1.42686 1.03960 1.02269 1.91142 1.20616 0.87792 0.89268 0.98575 1.22404 0.96318 0.95547 0.97869 0.90807 1.22385 0.93964 1.00968 0.98023 1.22608 0.97435 0.97016 1.00149 1.21731 0.88371 0.98012 0.88223 0.88981 1.46129 1.05365 1.69174 1.15809 1.18089 0.82503 0.77676 0.87346 1.90802 1.78843 1.46739 1.24395 1.20045 0.93849 1.03389 0.94602 1.21085 1.00764 0.96155 0.91438 1.20714 0.89740 0.99428 1.00469 1.19698 0.95172 0.97941 0.90316 1.68758 1.03151 1.10869 1.31316 1.24201 0.92913 0.94117 0.97829 1.24147 1.01386 0.94800 0.89816 1.68698 1.02018 1.09983 1.32318 1.19453 0.91442 1.00769 0.93856 1.21242 0.90379 0.93006 0.98714 1.22691 0.93491 0.98474 1.01461 0.93090 0.80702 0.95364 0.95658 0.91619 0.90837 0.91605 0.91185 0.76364 0.84090 0.83448 0.80483 0.80462 0.82677 0.89565 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.32 13.97 55.49 0.78 -28.54 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.88 21.98 27.74 -169.99 -4.71 17.27 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 7 C -0.24 -6.84 10.47 -15.06 -0.16 -7.00 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 N -0.76 -17.47 5.25 -59.91 -0.31 -17.79 16 10 C 0.16 2.99 5.71 -4.04 -0.02 2.97 16 11 C -0.10 -1.39 2.96 -88.56 -0.26 -1.65 16 12 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 13 C -0.12 -1.56 5.96 -25.07 -0.15 -1.71 16 14 C -0.13 -1.55 6.59 -25.61 -0.17 -1.72 16 15 C 0.14 1.48 3.23 -66.82 -0.22 1.27 16 16 H 0.09 1.05 7.59 -51.93 -0.39 0.66 16 17 N -0.71 -6.63 4.89 -53.66 -0.26 -6.89 16 18 C 0.56 6.14 7.76 -12.32 -0.10 6.04 16 19 O -0.53 -7.66 15.97 5.32 0.08 -7.57 16 20 C -0.11 -1.06 5.87 -105.00 -0.62 -1.67 16 21 C -0.07 -0.53 9.44 -39.58 -0.37 -0.90 16 22 C -0.08 -0.64 9.95 -39.55 -0.39 -1.03 16 23 C 0.09 0.86 6.59 -84.73 -0.56 0.30 16 24 N -0.43 -3.64 10.46 -10.74 -0.11 -3.76 16 25 C 0.09 0.46 11.21 -17.20 -0.19 0.27 16 26 C 0.07 0.42 11.21 -17.22 -0.19 0.23 16 27 N -0.42 -3.83 10.46 -10.81 -0.11 -3.94 16 28 C 0.07 0.68 6.58 -84.81 -0.56 0.12 16 29 C -0.01 -0.13 9.56 -38.69 -0.37 -0.50 16 30 C -0.12 -1.28 5.89 -25.00 -0.15 -1.43 16 31 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 32 H 0.36 8.14 5.39 -40.82 -0.22 7.92 16 33 H 0.03 0.53 8.10 -51.93 -0.42 0.11 16 34 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.04 8.02 -51.93 -0.42 0.63 16 37 H 0.07 0.78 7.92 -51.93 -0.41 0.37 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.40 2.79 6.55 -40.82 -0.27 2.53 16 40 H 0.14 0.63 6.35 -52.48 -0.33 0.30 16 41 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16 42 H 0.18 0.24 8.06 -52.49 -0.42 -0.18 16 43 H 0.18 0.29 8.06 -52.49 -0.42 -0.13 16 44 H 0.16 1.61 7.61 -52.48 -0.40 1.21 16 45 H 0.09 0.89 8.06 -51.93 -0.42 0.47 16 46 H 0.07 0.66 7.98 -51.93 -0.41 0.25 16 LS Contribution 380.63 15.07 5.74 5.74 Total: -1.00 -36.07 380.63 -9.74 -45.81 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.25 Total: 6.12 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -4.57 Total: -6.43 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: -0.03 Total: -60.92 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: 0.08 Total: -7.57 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.71 Total: 17.27 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.07 -9.74 -45.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700934975.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.061 kcal (2) G-P(sol) polarization free energy of solvation -36.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds