Wall clock time and date at job start Tue Mar 31 2020 23:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 120.00336 * 2 1 4 4 H 1.48498 * 109.47104 * 270.00900 * 3 2 1 5 5 H 1.48504 * 109.46579 * 30.00415 * 3 2 1 6 6 H 1.48494 * 109.46770 * 150.00692 * 3 2 1 7 7 C 1.38821 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99670 * 359.97438 * 7 2 1 9 9 N 1.36930 * 119.99787 * 179.97438 * 7 2 1 10 10 C 1.46502 * 119.99999 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47465 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.66933 * 56.77858 * 11 10 9 13 13 C 1.54891 * 110.75305 * 293.54734 * 11 10 9 14 14 C 1.54270 * 104.19065 * 203.55595 * 13 11 10 15 15 C 1.53874 * 106.60197 * 23.61292 * 14 13 11 16 16 H 1.09002 * 110.03457 * 119.33146 * 15 14 13 17 17 N 1.46494 * 110.03206 * 240.71481 * 15 14 13 18 18 C 1.34780 * 119.99959 * 272.90951 * 17 15 14 19 19 O 1.21550 * 120.00078 * 359.97438 * 18 17 15 20 20 C 1.47864 * 120.00067 * 180.02562 * 18 17 15 21 21 C 1.40614 * 119.75459 * 359.97438 * 20 18 17 22 22 C 1.35735 * 120.83341 * 180.02562 * 21 20 18 23 23 C 1.40707 * 120.08346 * 359.97438 * 22 21 20 24 24 N 1.33792 * 120.85132 * 180.02562 * 23 22 21 25 25 C 1.31335 * 119.75842 * 179.97438 * 24 23 22 26 26 C 1.39752 * 120.70908 * 359.97438 * 25 24 23 27 27 N 1.31279 * 120.68030 * 359.97438 * 26 25 24 28 28 C 1.33828 * 119.73287 * 0.02562 * 27 26 25 29 29 C 1.38412 * 119.75351 * 179.97438 * 20 18 17 30 30 C 1.54263 * 106.63779 * 0.02562 * 15 14 13 31 31 H 0.97004 * 119.99626 * 359.97438 * 1 2 3 32 32 H 0.96996 * 120.00600 * 359.97438 * 9 7 2 33 33 H 1.09001 * 109.47025 * 59.99628 * 10 9 7 34 34 H 1.09000 * 109.46716 * 300.00558 * 10 9 7 35 35 H 1.08998 * 110.48878 * 84.88327 * 13 11 10 36 36 H 1.08997 * 110.59907 * 322.28672 * 13 11 10 37 37 H 1.08996 * 110.03330 * 264.31940 * 14 13 11 38 38 H 1.09004 * 110.06994 * 142.92101 * 14 13 11 39 39 H 0.96998 * 120.00364 * 92.90015 * 17 15 14 40 40 H 1.08004 * 119.58489 * 0.02562 * 21 20 18 41 41 H 1.08005 * 119.95363 * 179.69897 * 22 21 20 42 42 H 1.08002 * 119.64531 * 179.97438 * 25 24 23 43 43 H 1.08001 * 119.66118 * 179.97438 * 26 25 24 44 44 H 1.08004 * 120.25213 * 359.97438 * 29 20 18 45 45 H 1.09000 * 110.48737 * 95.04547 * 30 15 14 46 46 H 1.09000 * 110.48749 * 217.68915 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7002 6 1 3.5479 1.4399 0.6999 7 6 2.0103 -1.2023 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.6163 -2.1915 -0.0011 12 1 5.8925 -1.5719 0.8521 13 6 6.0502 -1.5223 -1.3289 14 6 7.5521 -1.8543 -1.4465 15 6 7.7899 -3.1200 -0.6044 16 1 8.1660 -3.9242 -1.2369 17 7 8.7465 -2.8366 0.4683 18 6 10.0696 -2.9532 0.2395 19 8 10.4692 -3.2940 -0.8567 20 6 11.0352 -2.6677 1.3224 21 6 10.5673 -2.2744 2.5888 22 6 11.4342 -2.0065 3.5983 23 6 12.8205 -2.1209 3.3866 24 7 13.6887 -1.8611 4.3709 25 6 14.9782 -1.9753 4.1497 26 6 15.4554 -2.3664 2.8957 27 7 14.6237 -2.6278 1.9142 28 6 13.3050 -2.5187 2.1148 29 6 12.3928 -2.7896 1.0820 30 6 6.4246 -3.5143 -0.0044 31 1 -0.4850 0.8401 0.0004 32 1 3.8646 -0.3623 -0.0014 33 1 3.8483 -3.0428 -0.8908 34 1 3.8490 -3.0424 0.8891 35 1 5.9007 -0.4438 -1.2792 36 1 5.4992 -1.9447 -2.1691 37 1 8.1485 -1.0292 -1.0572 38 1 7.8128 -2.0442 -2.4878 39 1 8.4278 -2.5649 1.3432 40 1 9.5048 -2.1844 2.7604 41 1 11.0595 -1.7008 4.5640 42 1 15.6774 -1.7647 4.9454 43 1 16.5194 -2.4544 2.7324 44 1 12.7479 -3.0924 0.1079 45 1 5.9340 -4.2600 -0.6299 46 1 6.5483 -3.8890 1.0117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700934975.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:33 Heat of formation + Delta-G solvation = 15.531062 kcal Electronic energy + Delta-G solvation = -27819.503593 eV Core-core repulsion = 23900.983388 eV Total energy + Delta-G solvation = -3918.520205 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.51148 -41.23354 -39.41700 -38.06421 -36.61643 -35.88105 -34.81887 -33.32817 -32.05046 -31.71834 -30.38011 -29.20772 -26.87013 -25.97886 -25.58823 -23.70860 -23.58560 -22.55592 -21.24502 -21.10543 -19.96017 -19.57176 -19.35990 -18.23906 -17.50882 -17.24919 -16.67561 -16.41197 -16.12491 -16.10017 -15.72374 -15.69675 -15.23842 -15.20057 -14.93574 -14.86695 -14.59744 -14.45147 -13.66151 -13.60982 -13.54170 -13.07609 -12.88765 -12.86200 -12.85273 -12.78172 -12.76726 -12.28849 -12.17588 -11.95330 -11.82143 -11.64333 -11.59823 -11.45732 -11.17193 -10.94477 -10.27477 -10.20426 -10.04063 -9.74756 -9.25773 -8.01374 -5.33828 -1.06143 -0.66405 0.67941 1.25120 1.37658 1.41738 1.48976 1.96913 2.14385 2.49394 2.91178 2.96295 3.08513 3.15707 3.30263 3.47495 3.47792 3.59877 3.74190 3.84427 3.85994 3.96566 3.99577 4.09283 4.40415 4.43415 4.50217 4.51674 4.60563 4.64167 4.69116 4.71963 4.75942 4.85343 4.90760 4.99531 5.07858 5.09452 5.13880 5.16750 5.21632 5.34862 5.46704 5.54354 5.56668 5.78092 6.17124 6.23074 6.43567 6.62791 7.08247 7.10599 7.88052 8.06832 9.20318 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018819 B = 0.001992 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.479927 B =14050.670179 C =14841.458887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.067 4.067 3 Si 0.955 3.045 4 H -0.280 1.280 5 H -0.297 1.297 6 H -0.248 1.248 7 C -0.233 4.233 8 H 0.055 0.945 9 N -0.757 5.757 10 C 0.160 3.840 11 C -0.094 4.094 12 H 0.085 0.915 13 C -0.116 4.116 14 C -0.126 4.126 15 C 0.147 3.853 16 H 0.086 0.914 17 N -0.700 5.700 18 C 0.559 3.441 19 O -0.572 6.572 20 C -0.118 4.118 21 C -0.069 4.069 22 C -0.085 4.085 23 C 0.075 3.925 24 N -0.451 5.451 25 C 0.097 3.903 26 C 0.084 3.916 27 N -0.452 5.452 28 C 0.047 3.953 29 C -0.029 4.029 30 C -0.111 4.111 31 H 0.257 0.743 32 H 0.366 0.634 33 H 0.023 0.977 34 H 0.027 0.973 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.415 0.585 40 H 0.171 0.829 41 H 0.167 0.833 42 H 0.222 0.778 43 H 0.219 0.781 44 H 0.139 0.861 45 H 0.089 0.911 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.068 -5.596 9.669 36.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.258 4.258 3 Si 0.782 3.218 4 H -0.207 1.207 5 H -0.224 1.224 6 H -0.172 1.172 7 C -0.364 4.364 8 H 0.073 0.927 9 N -0.402 5.402 10 C 0.034 3.966 11 C -0.112 4.112 12 H 0.103 0.897 13 C -0.154 4.154 14 C -0.164 4.164 15 C 0.042 3.958 16 H 0.104 0.896 17 N -0.352 5.352 18 C 0.347 3.653 19 O -0.452 6.452 20 C -0.123 4.123 21 C -0.088 4.088 22 C -0.104 4.104 23 C -0.047 4.047 24 N -0.166 5.166 25 C -0.080 4.080 26 C -0.093 4.093 27 N -0.166 5.166 28 C -0.075 4.075 29 C -0.049 4.049 30 C -0.149 4.149 31 H 0.066 0.934 32 H 0.199 0.801 33 H 0.041 0.959 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.253 0.747 40 H 0.188 0.812 41 H 0.184 0.816 42 H 0.238 0.762 43 H 0.235 0.765 44 H 0.157 0.843 45 H 0.107 0.893 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 34.852 -5.981 8.794 36.439 hybrid contribution -0.300 1.176 -0.022 1.214 sum 34.552 -4.805 8.772 35.971 Atomic orbital electron populations 1.69894 1.07187 1.26609 1.59919 1.25535 0.96135 1.01331 1.02845 0.85405 0.78796 0.79547 0.78035 1.20670 1.22377 1.17218 1.19065 0.82990 0.93375 1.40964 0.92682 1.42697 1.02274 1.04382 1.90874 1.20814 0.90479 0.87165 0.98158 1.22296 0.93143 0.97513 0.98280 0.89672 1.22350 0.95083 1.00271 0.97655 1.22519 0.95991 0.97514 1.00409 1.21573 0.88556 0.97265 0.88398 0.89627 1.45990 1.04621 1.68411 1.16183 1.18328 0.83045 0.76849 0.87106 1.90781 1.79535 1.48746 1.26130 1.19946 0.93087 1.04226 0.95069 1.21288 1.02147 0.95288 0.90124 1.20983 0.89248 0.98848 1.01282 1.19949 0.96208 0.98305 0.90270 1.68831 1.04403 1.12082 1.31239 1.24990 0.92599 0.91590 0.98791 1.24922 1.02810 0.92363 0.89159 1.68708 1.02196 1.11653 1.34086 1.19510 0.91924 1.01874 0.94189 1.21196 0.91180 0.94129 0.98428 1.22614 0.92474 0.96829 1.02965 0.93431 0.80092 0.95930 0.95531 0.92546 0.91940 0.91507 0.91395 0.74671 0.81210 0.81595 0.76179 0.76476 0.84330 0.89291 0.88607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.27 13.97 21.65 0.30 -62.97 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 3 Si 0.95 45.06 27.74 68.60 1.90 46.96 16 4 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.25 -10.34 6.52 99.48 0.65 -9.69 16 7 C -0.23 -13.20 10.47 84.04 0.88 -12.32 16 8 H 0.06 3.43 8.06 -2.91 -0.02 3.41 16 9 N -0.76 -34.15 5.25 -343.45 -1.80 -35.96 16 10 C 0.16 5.59 5.71 86.38 0.49 6.08 16 11 C -0.09 -2.30 2.96 -9.46 -0.03 -2.33 16 12 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 13 C -0.12 -2.94 5.96 31.67 0.19 -2.75 16 14 C -0.13 -2.73 6.59 31.32 0.21 -2.52 16 15 C 0.15 2.81 3.23 45.72 0.15 2.96 16 16 H 0.09 1.84 7.59 -2.39 -0.02 1.82 16 17 N -0.70 -11.50 4.89 -441.96 -2.16 -13.66 16 18 C 0.56 11.91 7.76 86.79 0.67 12.59 16 19 O -0.57 -16.74 15.97 -3.87 -0.06 -16.80 16 20 C -0.12 -2.14 5.87 -20.11 -0.12 -2.26 16 21 C -0.07 -0.84 9.44 22.27 0.21 -0.63 16 22 C -0.08 -1.13 9.95 22.29 0.22 -0.91 16 23 C 0.08 1.32 6.59 40.32 0.27 1.58 16 24 N -0.45 -6.79 10.46 -187.89 -1.96 -8.76 16 25 C 0.10 0.76 11.21 85.13 0.95 1.72 16 26 C 0.08 0.75 11.21 85.14 0.95 1.70 16 27 N -0.45 -8.07 10.46 -188.11 -1.97 -10.04 16 28 C 0.05 0.93 6.58 40.25 0.27 1.20 16 29 C -0.03 -0.60 9.56 22.85 0.22 -0.38 16 30 C -0.11 -2.01 5.89 31.71 0.19 -1.83 16 31 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 32 H 0.37 15.68 5.39 -92.71 -0.50 15.18 16 33 H 0.02 0.83 8.10 -2.39 -0.02 0.81 16 34 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 36 H 0.06 1.72 8.02 -2.39 -0.02 1.70 16 37 H 0.07 1.45 7.92 -2.39 -0.02 1.44 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.41 4.39 6.55 -92.71 -0.61 3.78 16 40 H 0.17 0.94 6.35 -2.91 -0.02 0.92 16 41 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.22 -0.40 8.06 -2.91 -0.02 -0.43 16 43 H 0.22 -0.10 8.06 -2.91 -0.02 -0.12 16 44 H 0.14 3.20 7.61 -2.91 -0.02 3.18 16 45 H 0.09 1.63 8.06 -2.39 -0.02 1.61 16 46 H 0.10 1.36 7.98 -2.39 -0.02 1.35 16 Total: -1.00 -81.66 380.63 0.30 -81.36 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: -0.14 Total: 21.46 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 6.19 Total: -1.59 kcal Atomic # 7 Polarization: -123.79 SS G_CDS: -7.59 Total: -131.38 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.06 Total: -16.80 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.90 Total: 46.96 kcal Total: -81.66 0.30 -81.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700934975.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.892 kcal (2) G-P(sol) polarization free energy of solvation -81.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds