Wall clock time and date at job start Tue Mar 31 2020 22:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99880 * 2 1 4 4 C 1.52998 * 109.46931 * 269.99325 * 3 2 1 5 5 H 1.09001 * 109.47139 * 60.00533 * 4 3 2 6 6 O 1.42899 * 109.47704 * 300.00241 * 4 3 2 7 7 C 1.53006 * 109.47096 * 180.02562 * 4 3 2 8 8 N 1.46507 * 109.46869 * 185.00275 * 7 4 3 9 9 C 1.36933 * 119.99572 * 180.02562 * 8 7 4 10 10 H 1.08005 * 120.00283 * 0.02562 * 9 8 7 11 11 C 1.38817 * 119.99675 * 179.97438 * 9 8 7 12 12 N 1.31613 * 120.00319 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99740 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47078 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.46795 * 120.00141 * 13 11 9 16 16 H 1.48500 * 109.47184 * 240.00133 * 13 11 9 17 17 C 1.34777 * 119.99854 * 179.97438 * 2 1 3 18 18 O 1.21279 * 120.00162 * 180.02562 * 17 2 1 19 19 C 1.50696 * 119.99761 * 0.02562 * 17 2 1 20 20 C 1.53002 * 109.46919 * 179.97438 * 19 17 2 21 21 O 1.42905 * 109.47079 * 179.97438 * 20 19 17 22 22 C 1.35950 * 116.99802 * 180.02562 * 21 20 19 23 23 C 1.38708 * 120.03026 * 359.72477 * 22 21 20 24 24 C 1.38148 * 119.96893 * 179.78884 * 23 22 21 25 25 C 1.38453 * 120.02995 * 0.48957 * 24 23 22 26 26 F 1.35097 * 119.97318 * 179.72219 * 25 24 23 27 27 C 1.38459 * 120.05793 * 359.74257 * 25 24 23 28 28 C 1.38144 * 120.03434 * 0.02562 * 27 25 24 29 29 H 1.09002 * 109.47335 * 270.00735 * 1 2 3 30 30 H 1.09001 * 109.47076 * 30.00140 * 1 2 3 31 31 H 1.08996 * 109.47068 * 150.00167 * 1 2 3 32 32 H 1.08997 * 109.47682 * 29.99532 * 3 2 1 33 33 H 1.09004 * 109.47271 * 149.99629 * 3 2 1 34 34 H 0.96702 * 113.99961 * 300.00570 * 6 4 3 35 35 H 1.08992 * 109.47358 * 305.00060 * 7 4 3 36 36 H 1.08994 * 109.46819 * 65.00590 * 7 4 3 37 37 H 0.96994 * 120.00178 * 0.02562 * 8 7 4 38 38 H 0.96999 * 120.00129 * 179.97438 * 12 11 9 39 39 H 1.09004 * 109.47237 * 59.99891 * 19 17 2 40 40 H 1.09004 * 109.47662 * 299.99732 * 19 17 2 41 41 H 1.09004 * 109.46930 * 60.00101 * 20 19 17 42 42 H 1.09000 * 109.47312 * 300.00045 * 20 19 17 43 43 H 1.08003 * 120.01532 * 0.02562 * 23 22 21 44 44 H 1.08004 * 119.98636 * 180.21131 * 24 23 22 45 45 H 1.08006 * 119.98069 * 180.02562 * 27 25 24 46 46 H 1.08001 * 120.02084 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 1.5002 1.8406 -1.9564 6 8 3.2249 0.7144 -2.1161 7 6 3.2182 3.0350 -1.4425 8 7 3.3581 3.5181 -2.8186 9 6 4.0133 4.6943 -3.0679 10 1 4.4272 5.2658 -2.2502 11 6 4.1464 5.1518 -4.3718 12 7 3.6425 4.4552 -5.3683 13 14 5.0396 6.7569 -4.7118 14 1 5.5082 7.3436 -3.4307 15 1 6.2063 6.4969 -5.5928 16 1 4.1146 7.7056 -5.3823 17 6 2.1389 -1.1672 0.0005 18 8 3.3517 -1.1673 0.0010 19 6 1.3853 -2.4722 0.0005 20 6 2.3795 -3.6352 0.0005 21 8 1.6650 -4.8728 0.0011 22 6 2.4054 -6.0129 0.0017 23 6 3.7906 -5.9411 -0.0040 24 6 4.5418 -7.1005 0.0011 25 6 3.9126 -8.3338 0.0016 26 9 4.6483 -9.4668 0.0009 27 6 2.5299 -8.4069 0.0025 28 6 1.7763 -7.2492 0.0023 29 1 -0.3634 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6084 2.0284 0.5137 33 1 3.1499 1.1384 0.5139 34 1 4.0874 0.5458 -1.7125 35 1 2.6712 3.7708 -0.8531 36 1 4.2064 2.8835 -1.0084 37 1 2.9867 3.0047 -3.5530 38 1 3.7352 4.7750 -6.2793 39 1 0.7590 -2.5301 -0.8897 40 1 0.7583 -2.5298 0.8903 41 1 3.0062 -3.5775 0.8906 42 1 3.0062 -3.5775 -0.8894 43 1 4.2817 -4.9792 -0.0085 44 1 5.6204 -7.0449 0.0000 45 1 2.0403 -9.3697 0.0033 46 1 0.6978 -7.3065 0.0025 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700950800.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:12 Heat of formation + Delta-G solvation = -128.147440 kcal Electronic energy + Delta-G solvation = -28435.657874 eV Core-core repulsion = 24047.845326 eV Total energy + Delta-G solvation = -4387.812548 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.13945 -40.62340 -40.00711 -37.73989 -37.25530 -35.37773 -34.00720 -32.58557 -31.59656 -31.26852 -29.75795 -29.16000 -27.01552 -25.98924 -24.49251 -23.25701 -22.64384 -22.01693 -21.15846 -19.40855 -18.73557 -17.81790 -17.17510 -17.15380 -16.84395 -16.78293 -16.47634 -15.95538 -15.73135 -15.21983 -15.04933 -14.95781 -14.52681 -14.43076 -14.04448 -13.99819 -13.58175 -13.44126 -13.24702 -13.03045 -12.95582 -12.90710 -12.68565 -12.45131 -12.19641 -12.04231 -11.96513 -11.52108 -11.17017 -11.02332 -10.94525 -10.83658 -10.69481 -10.13496 -10.04348 -9.78372 -9.62644 -9.60071 -8.90505 -8.59931 -8.48278 -6.92367 -5.75400 -3.04816 0.74994 0.82639 2.40457 2.51285 3.09840 3.17681 3.43183 3.48363 3.50998 3.94475 4.22886 4.32999 4.37235 4.53145 4.56945 4.58149 4.71434 4.83138 4.87158 4.88208 4.97401 5.04844 5.14251 5.19672 5.28043 5.37387 5.39422 5.47406 5.48841 5.53386 5.64156 5.71397 5.72987 5.74646 5.83886 5.97730 6.20842 6.30127 6.35986 6.51317 6.72468 6.94440 7.19466 7.69012 8.00745 8.17157 8.42835 9.54233 10.12117 10.47638 11.47083 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017658 B = 0.001738 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.262467 B =16105.084746 C =17140.089924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.607 5.607 3 C 0.084 3.916 4 C 0.086 3.914 5 H 0.095 0.905 6 O -0.548 6.548 7 C 0.126 3.874 8 N -0.725 5.725 9 C -0.242 4.242 10 H 0.070 0.930 11 C -0.014 4.014 12 N -0.930 5.930 13 Si 0.908 3.092 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 C 0.526 3.474 18 O -0.537 6.537 19 C -0.138 4.138 20 C 0.073 3.927 21 O -0.314 6.314 22 C 0.127 3.873 23 C -0.179 4.179 24 C -0.111 4.111 25 C 0.055 3.945 26 F -0.142 7.142 27 C -0.115 4.115 28 C -0.125 4.125 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.374 0.626 35 H 0.024 0.976 36 H 0.021 0.979 37 H 0.388 0.612 38 H 0.255 0.745 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.143 0.857 44 H 0.139 0.861 45 H 0.141 0.859 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.264 -23.500 16.117 29.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.339 5.339 3 C -0.039 4.039 4 C 0.025 3.975 5 H 0.113 0.887 6 O -0.353 6.353 7 C -0.003 4.003 8 N -0.370 5.370 9 C -0.374 4.374 10 H 0.088 0.912 11 C -0.210 4.210 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.206 1.206 15 H -0.218 1.218 16 H -0.218 1.218 17 C 0.313 3.687 18 O -0.414 6.414 19 C -0.178 4.178 20 C -0.002 4.002 21 O -0.228 6.228 22 C 0.081 3.919 23 C -0.197 4.197 24 C -0.130 4.130 25 C 0.036 3.964 26 F -0.121 7.121 27 C -0.133 4.133 28 C -0.144 4.144 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.222 0.778 35 H 0.042 0.958 36 H 0.039 0.961 37 H 0.222 0.778 38 H 0.065 0.935 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.160 0.840 44 H 0.157 0.843 45 H 0.159 0.841 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.243 -23.354 15.759 29.355 hybrid contribution 1.030 0.813 -0.156 1.322 sum -7.213 -22.541 15.603 28.347 Atomic orbital electron populations 1.21873 0.79328 1.03880 1.01810 1.47641 1.06987 1.05938 1.73369 1.22291 0.98297 0.84468 0.98849 1.22485 0.95734 0.88343 0.90902 0.88665 1.86537 1.33091 1.58901 1.56808 1.21239 0.96794 0.92479 0.89768 1.42252 1.67999 1.25341 1.01409 1.19272 1.28048 0.97834 0.92202 0.91196 1.24768 1.01518 0.99070 0.95622 1.69688 1.50321 1.39201 0.98606 0.86110 0.79047 0.83222 0.77754 1.20571 1.21836 1.21848 1.20063 0.87785 0.84860 0.75947 1.90688 1.13790 1.87270 1.49616 1.21478 0.99359 0.91106 1.05828 1.22512 0.94115 0.80217 1.03367 1.85988 1.35730 1.12680 1.88420 1.18986 0.89907 0.86625 0.96396 1.21267 0.92729 0.99729 1.06017 1.20989 1.01111 0.90554 1.00312 1.17600 0.89394 0.82218 1.07171 1.91492 1.77115 1.49168 1.94348 1.20950 0.91806 0.99440 1.01134 1.20282 1.00855 0.88712 1.04559 0.92393 0.90483 0.90846 0.89516 0.89386 0.77845 0.95795 0.96119 0.77768 0.93540 0.87568 0.87941 0.90897 0.90527 0.83966 0.84344 0.84082 0.84088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 10.24 59.85 0.61 1.13 16 2 N -0.61 -6.42 2.83 -181.57 -0.51 -6.94 16 3 C 0.08 1.02 5.15 -4.04 -0.02 1.00 16 4 C 0.09 1.39 3.27 -26.73 -0.09 1.30 16 5 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 6 O -0.55 -10.01 12.09 -43.91 -0.53 -10.54 16 7 C 0.13 2.48 5.90 -4.03 -0.02 2.46 16 8 N -0.73 -18.76 5.55 -59.90 -0.33 -19.09 16 9 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 10 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 11 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 12 N -0.93 -28.76 13.06 55.49 0.72 -28.04 16 13 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 16 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 17 C 0.53 6.05 7.18 -10.99 -0.08 5.97 16 18 O -0.54 -7.87 14.35 -3.12 -0.04 -7.92 16 19 C -0.14 -1.12 4.62 -27.88 -0.13 -1.25 16 20 C 0.07 0.66 4.03 37.16 0.15 0.81 16 21 O -0.31 -2.91 10.14 -19.58 -0.20 -3.11 16 22 C 0.13 1.14 6.69 -39.23 -0.26 0.88 16 23 C -0.18 -1.56 9.04 -39.44 -0.36 -1.92 16 24 C -0.11 -0.94 10.02 -39.54 -0.40 -1.33 16 25 C 0.06 0.49 7.30 -39.42 -0.29 0.20 16 26 F -0.14 -1.38 17.27 2.25 0.04 -1.34 16 27 C -0.11 -0.86 10.02 -39.53 -0.40 -1.25 16 28 C -0.13 -0.97 9.98 -39.44 -0.39 -1.36 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 31 H 0.07 0.41 6.44 -51.93 -0.33 0.08 16 32 H 0.09 0.87 8.07 -51.93 -0.42 0.45 16 33 H 0.09 1.14 7.42 -51.93 -0.39 0.75 16 34 H 0.37 6.44 8.45 45.56 0.38 6.82 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.39 10.83 7.67 -40.82 -0.31 10.51 16 38 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.11 0.78 7.40 -51.93 -0.38 0.39 16 40 H 0.10 0.63 8.11 -51.93 -0.42 0.20 16 41 H 0.07 0.65 7.63 -51.93 -0.40 0.25 16 42 H 0.08 0.76 7.61 -51.93 -0.40 0.36 16 43 H 0.14 1.14 6.30 -52.48 -0.33 0.81 16 44 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 45 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 46 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 391.13 15.07 5.89 5.89 Total: -1.00 -34.83 391.13 -7.82 -42.65 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -5.92 Total: 11.71 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -1.92 Total: -0.91 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: -0.12 Total: -54.06 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.77 Total: -21.56 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.83 -7.82 -42.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700950800.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.497 kcal (2) G-P(sol) polarization free energy of solvation -34.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds