Wall clock time and date at job start Tue Mar 31 2020 22:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99880 * 2 1 4 4 C 1.52998 * 109.46931 * 269.99325 * 3 2 1 5 5 H 1.09001 * 109.47139 * 60.00533 * 4 3 2 6 6 O 1.42899 * 109.47704 * 300.00241 * 4 3 2 7 7 C 1.53006 * 109.47096 * 180.02562 * 4 3 2 8 8 N 1.46507 * 109.46869 * 185.00275 * 7 4 3 9 9 C 1.36933 * 119.99572 * 180.02562 * 8 7 4 10 10 H 1.08005 * 120.00283 * 0.02562 * 9 8 7 11 11 C 1.38817 * 119.99675 * 179.97438 * 9 8 7 12 12 N 1.31613 * 120.00319 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99740 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47078 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.46795 * 120.00141 * 13 11 9 16 16 H 1.48500 * 109.47184 * 240.00133 * 13 11 9 17 17 C 1.34777 * 119.99854 * 179.97438 * 2 1 3 18 18 O 1.21279 * 120.00162 * 180.02562 * 17 2 1 19 19 C 1.50696 * 119.99761 * 0.02562 * 17 2 1 20 20 C 1.53002 * 109.46919 * 179.97438 * 19 17 2 21 21 O 1.42905 * 109.47079 * 179.97438 * 20 19 17 22 22 C 1.35950 * 116.99802 * 180.02562 * 21 20 19 23 23 C 1.38708 * 120.03026 * 359.72477 * 22 21 20 24 24 C 1.38148 * 119.96893 * 179.78884 * 23 22 21 25 25 C 1.38453 * 120.02995 * 0.48957 * 24 23 22 26 26 F 1.35097 * 119.97318 * 179.72219 * 25 24 23 27 27 C 1.38459 * 120.05793 * 359.74257 * 25 24 23 28 28 C 1.38144 * 120.03434 * 0.02562 * 27 25 24 29 29 H 1.09002 * 109.47335 * 270.00735 * 1 2 3 30 30 H 1.09001 * 109.47076 * 30.00140 * 1 2 3 31 31 H 1.08996 * 109.47068 * 150.00167 * 1 2 3 32 32 H 1.08997 * 109.47682 * 29.99532 * 3 2 1 33 33 H 1.09004 * 109.47271 * 149.99629 * 3 2 1 34 34 H 0.96702 * 113.99961 * 300.00570 * 6 4 3 35 35 H 1.08992 * 109.47358 * 305.00060 * 7 4 3 36 36 H 1.08994 * 109.46819 * 65.00590 * 7 4 3 37 37 H 0.96994 * 120.00178 * 0.02562 * 8 7 4 38 38 H 0.96999 * 120.00129 * 179.97438 * 12 11 9 39 39 H 1.09004 * 109.47237 * 59.99891 * 19 17 2 40 40 H 1.09004 * 109.47662 * 299.99732 * 19 17 2 41 41 H 1.09004 * 109.46930 * 60.00101 * 20 19 17 42 42 H 1.09000 * 109.47312 * 300.00045 * 20 19 17 43 43 H 1.08003 * 120.01532 * 0.02562 * 23 22 21 44 44 H 1.08004 * 119.98636 * 180.21131 * 24 23 22 45 45 H 1.08006 * 119.98069 * 180.02562 * 27 25 24 46 46 H 1.08001 * 120.02084 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 1.5002 1.8406 -1.9564 6 8 3.2249 0.7144 -2.1161 7 6 3.2182 3.0350 -1.4425 8 7 3.3581 3.5181 -2.8186 9 6 4.0133 4.6943 -3.0679 10 1 4.4272 5.2658 -2.2502 11 6 4.1464 5.1518 -4.3718 12 7 3.6425 4.4552 -5.3683 13 14 5.0396 6.7569 -4.7118 14 1 5.5082 7.3436 -3.4307 15 1 6.2063 6.4969 -5.5928 16 1 4.1146 7.7056 -5.3823 17 6 2.1389 -1.1672 0.0005 18 8 3.3517 -1.1673 0.0010 19 6 1.3853 -2.4722 0.0005 20 6 2.3795 -3.6352 0.0005 21 8 1.6650 -4.8728 0.0011 22 6 2.4054 -6.0129 0.0017 23 6 3.7906 -5.9411 -0.0040 24 6 4.5418 -7.1005 0.0011 25 6 3.9126 -8.3338 0.0016 26 9 4.6483 -9.4668 0.0009 27 6 2.5299 -8.4069 0.0025 28 6 1.7763 -7.2492 0.0023 29 1 -0.3634 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6084 2.0284 0.5137 33 1 3.1499 1.1384 0.5139 34 1 4.0874 0.5458 -1.7125 35 1 2.6712 3.7708 -0.8531 36 1 4.2064 2.8835 -1.0084 37 1 2.9867 3.0047 -3.5530 38 1 3.7352 4.7750 -6.2793 39 1 0.7590 -2.5301 -0.8897 40 1 0.7583 -2.5298 0.8903 41 1 3.0062 -3.5775 0.8906 42 1 3.0062 -3.5775 -0.8894 43 1 4.2817 -4.9792 -0.0085 44 1 5.6204 -7.0449 0.0000 45 1 2.0403 -9.3697 0.0033 46 1 0.6978 -7.3065 0.0025 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700950800.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:11 Heat of formation + Delta-G solvation = -152.472552 kcal Electronic energy + Delta-G solvation = -28436.712690 eV Core-core repulsion = 24047.845326 eV Total energy + Delta-G solvation = -4388.867364 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.84377 -41.36169 -40.82840 -38.77924 -38.20777 -36.41320 -35.86148 -33.40210 -33.12295 -32.20239 -30.91076 -30.04338 -27.95109 -27.14964 -25.65277 -24.39243 -23.68159 -22.88515 -22.50611 -20.21937 -19.43260 -19.24625 -18.51796 -18.01023 -17.68697 -17.53861 -17.48321 -16.78291 -16.57343 -16.50889 -16.33693 -16.10528 -15.66398 -15.39843 -15.22618 -14.93805 -14.59776 -14.46052 -14.26460 -14.01967 -13.89858 -13.71683 -13.65574 -13.64585 -13.25045 -12.97707 -12.83799 -12.75769 -12.72529 -12.48298 -12.14144 -12.01075 -11.83210 -11.79650 -11.70427 -11.17326 -11.00232 -10.82620 -10.21096 -9.54967 -9.15392 -9.02899 -7.96517 -5.26368 0.13690 0.16683 1.45647 1.47363 1.57231 1.59710 1.72590 2.35591 2.54062 2.54794 3.30412 3.35160 3.49715 3.55943 3.68870 3.77008 3.78273 3.90304 3.92695 4.08035 4.10112 4.20636 4.28052 4.32178 4.39489 4.48828 4.52945 4.58374 4.66676 4.72555 4.77275 4.84647 4.89672 4.91775 5.00312 5.11070 5.12465 5.21059 5.24049 5.44544 5.49246 5.67014 6.24529 6.26800 6.39026 6.79596 7.16729 7.30876 8.07179 8.29720 9.27133 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017658 B = 0.001738 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.262467 B =16105.084746 C =17140.089924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.607 5.607 3 C 0.095 3.905 4 C 0.096 3.904 5 H 0.090 0.910 6 O -0.566 6.566 7 C 0.123 3.877 8 N -0.741 5.741 9 C -0.247 4.247 10 H 0.078 0.922 11 C -0.079 4.079 12 N -0.970 5.970 13 Si 0.977 3.023 14 H -0.264 1.264 15 H -0.295 1.295 16 H -0.291 1.291 17 C 0.517 3.483 18 O -0.577 6.577 19 C -0.128 4.128 20 C 0.076 3.924 21 O -0.315 6.315 22 C 0.111 3.889 23 C -0.188 4.188 24 C -0.118 4.118 25 C 0.039 3.961 26 F -0.150 7.150 27 C -0.110 4.110 28 C -0.124 4.124 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.079 0.921 34 H 0.376 0.624 35 H 0.041 0.959 36 H 0.021 0.979 37 H 0.374 0.626 38 H 0.251 0.749 39 H 0.119 0.881 40 H 0.131 0.869 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.142 0.858 44 H 0.148 0.852 45 H 0.165 0.835 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.724 -23.681 17.695 31.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.339 5.339 3 C -0.029 4.029 4 C 0.035 3.965 5 H 0.108 0.892 6 O -0.372 6.372 7 C -0.004 4.004 8 N -0.384 5.384 9 C -0.379 4.379 10 H 0.096 0.904 11 C -0.271 4.271 12 N -0.621 5.621 13 Si 0.806 3.194 14 H -0.188 1.188 15 H -0.222 1.222 16 H -0.218 1.218 17 C 0.306 3.694 18 O -0.457 6.457 19 C -0.167 4.167 20 C 0.001 3.999 21 O -0.229 6.229 22 C 0.066 3.934 23 C -0.207 4.207 24 C -0.137 4.137 25 C 0.019 3.981 26 F -0.129 7.129 27 C -0.128 4.128 28 C -0.143 4.143 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.133 0.867 33 H 0.098 0.902 34 H 0.224 0.776 35 H 0.059 0.941 36 H 0.039 0.961 37 H 0.205 0.795 38 H 0.060 0.940 39 H 0.137 0.863 40 H 0.149 0.851 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.160 0.840 44 H 0.166 0.834 45 H 0.183 0.817 46 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.734 -23.538 17.399 30.847 hybrid contribution 1.460 0.817 -0.588 1.773 sum -8.274 -22.722 16.811 29.451 Atomic orbital electron populations 1.22158 0.76871 1.04756 1.03741 1.47750 1.08493 1.05004 1.72646 1.22046 0.98994 0.86091 0.95730 1.22425 0.94376 0.86264 0.93426 0.89206 1.86510 1.33470 1.59364 1.57860 1.21460 0.97509 0.94658 0.86821 1.42476 1.67733 1.24753 1.03426 1.19718 1.27158 0.98515 0.92505 0.90393 1.25649 1.03103 1.02763 0.95587 1.69853 1.52318 1.41167 0.98752 0.85022 0.77416 0.79079 0.77910 1.18797 1.22241 1.21782 1.20673 0.87563 0.86067 0.75094 1.90671 1.15654 1.87909 1.51423 1.21435 0.98898 0.88671 1.07697 1.22428 0.94315 0.80666 1.02528 1.85966 1.35697 1.12684 1.88552 1.19246 0.90119 0.87088 0.96968 1.21336 0.93002 0.99865 1.06502 1.21143 1.01782 0.90518 1.00230 1.17844 0.90140 0.82049 1.08020 1.91471 1.77407 1.49492 1.94506 1.21227 0.91236 1.00517 0.99849 1.20553 1.01962 0.88083 1.03678 0.89869 0.90472 0.89243 0.86728 0.90245 0.77644 0.94086 0.96130 0.79463 0.94021 0.86331 0.85149 0.91169 0.92135 0.83995 0.83422 0.81728 0.82002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.72 10.24 127.77 1.31 2.03 16 2 N -0.61 -11.64 2.83 -846.77 -2.39 -14.03 16 3 C 0.10 2.16 5.15 86.38 0.44 2.60 16 4 C 0.10 3.02 3.27 30.60 0.10 3.12 16 5 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 6 O -0.57 -20.94 12.09 -140.68 -1.70 -22.64 16 7 C 0.12 4.77 5.90 86.38 0.51 5.28 16 8 N -0.74 -38.60 5.55 -343.44 -1.91 -40.50 16 9 C -0.25 -14.05 9.99 84.04 0.84 -13.21 16 10 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 11 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 12 N -0.97 -61.09 13.06 21.65 0.28 -60.81 16 13 Si 0.98 46.74 29.55 68.60 2.03 48.77 16 14 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 15 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 16 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 17 C 0.52 11.27 7.18 87.66 0.63 11.90 16 18 O -0.58 -16.98 14.35 5.27 0.08 -16.91 16 19 C -0.13 -1.83 4.62 29.85 0.14 -1.69 16 20 C 0.08 1.32 4.03 71.98 0.29 1.61 16 21 O -0.32 -5.44 10.14 -92.99 -0.94 -6.38 16 22 C 0.11 1.92 6.69 22.49 0.15 2.08 16 23 C -0.19 -3.30 9.04 22.36 0.20 -3.10 16 24 C -0.12 -2.00 10.02 22.30 0.22 -1.77 16 25 C 0.04 0.66 7.30 22.37 0.16 0.83 16 26 F -0.15 -2.85 17.27 44.97 0.78 -2.07 16 27 C -0.11 -1.48 10.02 22.30 0.22 -1.25 16 28 C -0.12 -1.71 9.98 22.36 0.22 -1.49 16 29 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.08 0.87 8.07 -2.39 -0.02 0.85 16 31 H 0.09 0.70 6.44 -2.39 -0.02 0.68 16 32 H 0.11 1.96 8.07 -2.39 -0.02 1.94 16 33 H 0.08 1.97 7.42 -2.38 -0.02 1.96 16 34 H 0.38 13.32 8.45 -74.06 -0.63 12.69 16 35 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.37 21.31 7.67 -92.71 -0.71 20.60 16 38 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 39 H 0.12 1.44 7.40 -2.38 -0.02 1.42 16 40 H 0.13 1.15 8.11 -2.39 -0.02 1.13 16 41 H 0.07 1.24 7.63 -2.38 -0.02 1.22 16 42 H 0.06 1.23 7.61 -2.39 -0.02 1.21 16 43 H 0.14 2.40 6.30 -2.91 -0.02 2.38 16 44 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 45 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 46 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -75.95 391.13 1.81 -74.14 By element: Atomic # 1 Polarization: 38.00 SS G_CDS: -0.32 Total: 37.68 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 5.91 Total: 2.76 kcal Atomic # 7 Polarization: -111.33 SS G_CDS: -4.02 Total: -115.35 kcal Atomic # 8 Polarization: -43.37 SS G_CDS: -2.57 Total: -45.93 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.78 Total: -2.07 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -75.95 1.81 -74.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700950800.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.330 kcal (2) G-P(sol) polarization free energy of solvation -75.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds