Wall clock time and date at job start Tue Mar 31 2020 22:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30990 * 1 3 3 C 1.50701 * 120.00271 * 2 1 4 4 C 1.53003 * 109.47206 * 124.99287 * 3 2 1 5 5 C 1.53001 * 109.46896 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.46976 * 180.02562 * 5 4 3 7 7 O 1.21278 * 120.00239 * 0.02562 * 6 5 4 8 8 N 1.34784 * 120.00095 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99504 * 354.71181 * 8 6 5 10 10 C 1.46495 * 119.99828 * 174.98401 * 8 6 5 11 11 C 1.52995 * 109.47238 * 94.74841 * 10 8 6 12 12 H 1.09008 * 112.73721 * 315.99558 * 11 10 8 13 13 C 1.53493 * 113.47307 * 86.73635 * 11 10 8 14 14 C 1.53612 * 83.30816 * 140.83226 * 13 11 10 15 15 N 1.47068 * 113.46865 * 185.25362 * 11 10 8 16 16 C 1.34772 * 136.05661 * 38.13169 * 15 11 10 17 17 O 1.21275 * 120.00701 * 355.00676 * 16 15 11 18 18 C 1.50706 * 119.99750 * 175.00731 * 16 15 11 19 19 S 1.81001 * 109.46961 * 179.97438 * 18 16 15 20 20 C 1.76205 * 99.99926 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99776 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00089 * 179.97438 * 20 19 18 23 23 N 1.31630 * 119.99758 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 119.99803 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47217 * 90.00674 * 24 22 20 26 26 H 1.48501 * 109.47002 * 209.99910 * 24 22 20 27 27 H 1.48498 * 109.47329 * 330.00144 * 24 22 20 28 28 H 1.08004 * 120.00305 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.00379 * 179.97438 * 1 2 3 30 30 H 1.08004 * 120.00305 * 179.97438 * 2 1 3 31 31 H 1.09005 * 109.46744 * 4.99747 * 3 2 1 32 32 H 1.09000 * 109.47356 * 245.00192 * 3 2 1 33 33 H 1.08996 * 109.46742 * 60.00451 * 4 3 2 34 34 H 1.08996 * 109.47417 * 300.00002 * 4 3 2 35 35 H 1.08996 * 109.47306 * 60.00491 * 5 4 3 36 36 H 1.09003 * 109.47185 * 300.00136 * 5 4 3 37 37 H 1.09003 * 109.47434 * 90.00175 * 9 8 6 38 38 H 1.09000 * 109.46732 * 209.99519 * 9 8 6 39 39 H 1.08995 * 109.47398 * 329.99538 * 9 8 6 40 40 H 1.09011 * 109.46820 * 214.74288 * 10 8 6 41 41 H 1.08997 * 109.47461 * 334.74022 * 10 8 6 42 42 H 1.08998 * 114.21222 * 254.44150 * 13 11 10 43 43 H 1.09003 * 114.20238 * 27.26694 * 13 11 10 44 44 H 1.09001 * 113.50703 * 219.18743 * 14 13 11 45 45 H 1.08996 * 113.46698 * 88.76755 * 14 13 11 46 46 H 1.08991 * 109.47428 * 300.00364 * 18 16 15 47 47 H 1.09010 * 109.46826 * 60.00037 * 18 16 15 48 48 H 0.97005 * 119.99782 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3331 1.1817 5 6 3.7995 2.6584 1.1820 6 6 4.7567 2.6858 2.3456 7 8 4.8215 1.7384 3.1001 8 7 5.5417 3.7627 2.5473 9 6 5.5494 4.8563 1.5726 10 6 6.3917 3.8368 3.7382 11 6 7.7934 3.3275 3.3968 12 1 7.7766 2.4157 2.7997 13 6 8.7168 4.4136 2.8280 14 6 9.7771 3.7099 3.6884 15 7 8.6875 3.2482 4.5618 16 6 8.5633 2.9033 5.8587 17 8 7.4709 2.6383 6.3139 18 6 9.7821 2.8469 6.7434 19 16 9.2915 2.3577 8.4156 20 6 10.8632 2.3728 9.2122 21 1 11.7492 2.6359 8.6536 22 6 10.9623 2.0475 10.5579 23 7 9.8823 1.7273 11.2389 24 14 12.6283 2.0642 11.4025 25 1 12.8845 3.4143 11.9654 26 1 12.6381 1.0614 12.4977 27 1 13.6868 1.7301 10.4160 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5401 -0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1316 0.0895 32 1 2.6212 1.4026 -0.9314 33 1 3.7398 0.5066 1.0922 34 1 2.4771 1.2357 2.1131 35 1 3.0943 3.4847 1.2718 36 1 4.3573 2.7563 0.2507 37 1 4.7879 5.5883 1.8417 38 1 6.5288 5.3347 1.5710 39 1 5.3373 4.4596 0.5798 40 1 6.4534 4.8712 4.0767 41 1 5.9637 3.2207 4.5290 42 1 8.8888 4.3368 1.7544 43 1 8.4735 5.4241 3.1565 44 1 10.4651 4.3981 4.1796 45 1 10.2899 2.9003 3.1693 46 1 10.4879 2.1189 6.3438 47 1 10.2530 3.8295 6.7761 48 1 9.9516 1.4996 12.1793 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001702480674.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:39 Heat of formation + Delta-G solvation = -19.769182 kcal Electronic energy + Delta-G solvation = -26536.849635 eV Core-core repulsion = 22719.949896 eV Total energy + Delta-G solvation = -3816.899738 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.70331 -39.69735 -37.46965 -36.37916 -35.60563 -32.78605 -32.41013 -30.83911 -29.45029 -28.13404 -27.52523 -26.48963 -25.45315 -23.68223 -22.22905 -21.89211 -20.22360 -19.23857 -18.90178 -17.70562 -17.15977 -16.73367 -16.55948 -16.30838 -15.72127 -15.29937 -15.12032 -14.78599 -14.54250 -14.15044 -14.05154 -13.79448 -13.66264 -13.31685 -13.30152 -13.03405 -12.71249 -12.62844 -12.54564 -12.41573 -12.04672 -12.03790 -11.85757 -11.69128 -11.63485 -11.22508 -11.04953 -11.01460 -11.00979 -10.77351 -10.74283 -9.93163 -9.79990 -9.65484 -9.27295 -9.04843 -8.94743 -8.50788 -8.20581 -6.47709 -6.19445 -3.90052 1.95000 2.47567 2.56401 2.96619 3.13613 3.23505 3.27319 3.31716 3.61099 4.11110 4.22181 4.26901 4.41768 4.61118 4.65987 4.70871 4.75728 4.85146 4.90912 4.94894 4.97330 5.06488 5.15395 5.15915 5.20505 5.23666 5.29966 5.33515 5.37490 5.42618 5.46276 5.55369 5.55877 5.61300 5.82598 5.87165 5.87605 5.99657 6.03442 6.10450 6.16955 6.30075 6.37557 6.43479 7.16391 7.61342 7.90997 8.04146 8.37170 8.60203 9.25488 10.87984 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017188 B = 0.001961 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.671126 B =14275.196096 C =15506.359603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.094 4.094 4 C -0.103 4.103 5 C -0.137 4.137 6 C 0.506 3.494 7 O -0.525 6.525 8 N -0.618 5.618 9 C 0.077 3.923 10 C 0.107 3.893 11 C 0.124 3.876 12 H 0.089 0.911 13 C -0.154 4.154 14 C 0.102 3.898 15 N -0.649 5.649 16 C 0.560 3.440 17 O -0.507 6.507 18 C -0.144 4.144 19 S -0.059 6.059 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.978 7.284 -29.134 31.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.170 4.170 3 C -0.131 4.131 4 C -0.141 4.141 5 C -0.177 4.177 6 C 0.294 3.706 7 O -0.400 6.400 8 N -0.352 5.352 9 C -0.067 4.067 10 C -0.016 4.016 11 C 0.019 3.981 12 H 0.107 0.893 13 C -0.192 4.192 14 C -0.021 4.021 15 N -0.389 5.389 16 C 0.350 3.650 17 O -0.381 6.381 18 C -0.295 4.295 19 S 0.168 5.832 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.127 0.873 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.125 0.875 42 H 0.105 0.895 43 H 0.113 0.887 44 H 0.099 0.901 45 H 0.100 0.900 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.674 6.251 -27.593 30.606 hybrid contribution 2.501 0.341 -0.038 2.525 sum -9.173 6.593 -27.630 29.851 Atomic orbital electron populations 1.23850 0.95986 1.01814 1.01764 1.22965 0.96050 0.98628 0.99323 1.20791 0.98159 0.95524 0.98659 1.21320 0.97810 0.96226 0.98724 1.21723 0.98055 1.00675 0.97231 1.20833 0.80981 0.81975 0.86812 1.90792 1.67734 1.34289 1.47136 1.47847 1.43234 1.20076 1.24084 1.21840 1.02841 0.89877 0.92094 1.21746 0.89301 1.02617 0.87926 1.22939 0.91576 0.97774 0.85804 0.89294 1.23608 0.96828 0.98760 0.99986 1.22873 0.91972 0.97393 0.89900 1.49785 1.12721 1.69562 1.06790 1.19966 0.90805 0.74883 0.79367 1.90725 1.27952 1.47030 1.72362 1.23478 0.98226 1.04966 1.02783 1.85436 1.13038 1.88974 0.95801 1.22863 0.93641 1.54134 0.97732 0.90962 1.24994 0.97783 0.94545 0.96272 1.70025 1.27969 1.43053 1.09184 0.86161 0.82304 0.78054 0.78932 1.20272 1.20735 1.19715 0.88666 0.88572 0.87319 0.91498 0.90982 0.90945 0.90913 0.88926 0.88971 0.92496 0.90737 0.90996 0.90144 0.87508 0.89530 0.88657 0.90129 0.90007 0.89395 0.89428 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.32 14.32 29.02 0.42 -0.91 16 2 C -0.15 -1.08 9.52 -36.02 -0.34 -1.42 16 3 C -0.09 -0.59 5.66 -27.88 -0.16 -0.74 16 4 C -0.10 -0.86 4.49 -26.73 -0.12 -0.98 16 5 C -0.14 -0.97 4.38 -27.88 -0.12 -1.09 16 6 C 0.51 5.89 7.66 -10.98 -0.08 5.81 16 7 O -0.52 -8.95 15.54 5.56 0.09 -8.86 16 8 N -0.62 -6.07 2.87 -181.58 -0.52 -6.59 16 9 C 0.08 0.38 10.23 59.85 0.61 0.99 16 10 C 0.11 1.38 5.17 -4.05 -0.02 1.36 16 11 C 0.12 1.49 4.28 -72.40 -0.31 1.18 16 12 H 0.09 1.13 8.14 -51.92 -0.42 0.71 16 13 C -0.15 -1.18 7.09 -26.16 -0.19 -1.37 16 14 C 0.10 1.02 8.42 -8.44 -0.07 0.95 16 15 N -0.65 -9.80 3.57 -177.23 -0.63 -10.43 16 16 C 0.56 11.43 8.02 -10.98 -0.09 11.34 16 17 O -0.51 -12.42 15.21 5.56 0.08 -12.33 16 18 C -0.14 -3.09 5.99 36.01 0.22 -2.88 16 19 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 20 C -0.54 -15.60 9.50 30.94 0.29 -15.31 16 21 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 22 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 23 N -0.87 -26.64 13.22 55.49 0.73 -25.91 16 24 Si 0.92 21.74 29.55 -169.99 -5.02 16.72 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 28 H 0.10 0.56 7.84 -52.48 -0.41 0.15 16 29 H 0.10 0.58 8.06 -52.49 -0.42 0.15 16 30 H 0.11 0.76 8.06 -52.48 -0.42 0.33 16 31 H 0.07 0.37 7.79 -51.93 -0.40 -0.04 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.43 7.24 -51.93 -0.38 0.05 16 37 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.07 0.29 7.11 -51.93 -0.37 -0.08 16 39 H 0.07 0.21 6.48 -51.93 -0.34 -0.12 16 40 H 0.08 0.93 7.84 -51.92 -0.41 0.52 16 41 H 0.11 1.92 6.21 -51.93 -0.32 1.60 16 42 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.09 0.67 7.94 -51.93 -0.41 0.26 16 44 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 47 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 48 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 412.23 15.07 6.21 6.21 Total: -1.00 -38.51 412.23 -9.41 -47.92 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -8.08 Total: -1.83 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -0.06 Total: -1.02 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: -0.42 Total: -42.93 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: 0.17 Total: -21.19 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -38.51 -9.41 -47.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001702480674.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.147 kcal (2) G-P(sol) polarization free energy of solvation -38.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds