Wall clock time and date at job start Tue Mar 31 2020 22:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30990 * 1 3 3 C 1.50701 * 120.00271 * 2 1 4 4 C 1.53003 * 109.47206 * 124.99287 * 3 2 1 5 5 C 1.53001 * 109.46896 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.46976 * 180.02562 * 5 4 3 7 7 O 1.21278 * 120.00239 * 0.02562 * 6 5 4 8 8 N 1.34784 * 120.00095 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99504 * 354.71181 * 8 6 5 10 10 C 1.46495 * 119.99828 * 174.98401 * 8 6 5 11 11 C 1.52995 * 109.47238 * 94.74841 * 10 8 6 12 12 H 1.09008 * 112.73721 * 315.99558 * 11 10 8 13 13 C 1.53493 * 113.47307 * 86.73635 * 11 10 8 14 14 C 1.53612 * 83.30816 * 140.83226 * 13 11 10 15 15 N 1.47068 * 113.46865 * 185.25362 * 11 10 8 16 16 C 1.34772 * 136.05661 * 38.13169 * 15 11 10 17 17 O 1.21275 * 120.00701 * 355.00676 * 16 15 11 18 18 C 1.50706 * 119.99750 * 175.00731 * 16 15 11 19 19 S 1.81001 * 109.46961 * 179.97438 * 18 16 15 20 20 C 1.76205 * 99.99926 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99776 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00089 * 179.97438 * 20 19 18 23 23 N 1.31630 * 119.99758 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 119.99803 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47217 * 90.00674 * 24 22 20 26 26 H 1.48501 * 109.47002 * 209.99910 * 24 22 20 27 27 H 1.48498 * 109.47329 * 330.00144 * 24 22 20 28 28 H 1.08004 * 120.00305 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.00379 * 179.97438 * 1 2 3 30 30 H 1.08004 * 120.00305 * 179.97438 * 2 1 3 31 31 H 1.09005 * 109.46744 * 4.99747 * 3 2 1 32 32 H 1.09000 * 109.47356 * 245.00192 * 3 2 1 33 33 H 1.08996 * 109.46742 * 60.00451 * 4 3 2 34 34 H 1.08996 * 109.47417 * 300.00002 * 4 3 2 35 35 H 1.08996 * 109.47306 * 60.00491 * 5 4 3 36 36 H 1.09003 * 109.47185 * 300.00136 * 5 4 3 37 37 H 1.09003 * 109.47434 * 90.00175 * 9 8 6 38 38 H 1.09000 * 109.46732 * 209.99519 * 9 8 6 39 39 H 1.08995 * 109.47398 * 329.99538 * 9 8 6 40 40 H 1.09011 * 109.46820 * 214.74288 * 10 8 6 41 41 H 1.08997 * 109.47461 * 334.74022 * 10 8 6 42 42 H 1.08998 * 114.21222 * 254.44150 * 13 11 10 43 43 H 1.09003 * 114.20238 * 27.26694 * 13 11 10 44 44 H 1.09001 * 113.50703 * 219.18743 * 14 13 11 45 45 H 1.08996 * 113.46698 * 88.76755 * 14 13 11 46 46 H 1.08991 * 109.47428 * 300.00364 * 18 16 15 47 47 H 1.09010 * 109.46826 * 60.00037 * 18 16 15 48 48 H 0.97005 * 119.99782 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0349 1.3331 1.1817 5 6 3.7995 2.6584 1.1820 6 6 4.7567 2.6858 2.3456 7 8 4.8215 1.7384 3.1001 8 7 5.5417 3.7627 2.5473 9 6 5.5494 4.8563 1.5726 10 6 6.3917 3.8368 3.7382 11 6 7.7934 3.3275 3.3968 12 1 7.7766 2.4157 2.7997 13 6 8.7168 4.4136 2.8280 14 6 9.7771 3.7099 3.6884 15 7 8.6875 3.2482 4.5618 16 6 8.5633 2.9033 5.8587 17 8 7.4709 2.6383 6.3139 18 6 9.7821 2.8469 6.7434 19 16 9.2915 2.3577 8.4156 20 6 10.8632 2.3728 9.2122 21 1 11.7492 2.6359 8.6536 22 6 10.9623 2.0475 10.5579 23 7 9.8823 1.7273 11.2389 24 14 12.6283 2.0642 11.4025 25 1 12.8845 3.4143 11.9654 26 1 12.6381 1.0614 12.4977 27 1 13.6868 1.7301 10.4160 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5401 -0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1316 0.0895 32 1 2.6212 1.4026 -0.9314 33 1 3.7398 0.5066 1.0922 34 1 2.4771 1.2357 2.1131 35 1 3.0943 3.4847 1.2718 36 1 4.3573 2.7563 0.2507 37 1 4.7879 5.5883 1.8417 38 1 6.5288 5.3347 1.5710 39 1 5.3373 4.4596 0.5798 40 1 6.4534 4.8712 4.0767 41 1 5.9637 3.2207 4.5290 42 1 8.8888 4.3368 1.7544 43 1 8.4735 5.4241 3.1565 44 1 10.4651 4.3981 4.1796 45 1 10.2899 2.9003 3.1693 46 1 10.4879 2.1189 6.3438 47 1 10.2530 3.8295 6.7761 48 1 9.9516 1.4996 12.1793 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001702480674.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:38 Heat of formation + Delta-G solvation = -46.191367 kcal Electronic energy + Delta-G solvation = -26537.995387 eV Core-core repulsion = 22719.949896 eV Total energy + Delta-G solvation = -3818.045490 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.74007 -40.70513 -38.91411 -36.97931 -36.49341 -34.62265 -33.43690 -32.25078 -30.33526 -29.48579 -28.14593 -27.68042 -27.11527 -24.51455 -23.23770 -22.65389 -20.77415 -20.35283 -19.98903 -19.49770 -18.13396 -17.96475 -17.43809 -17.23717 -16.92020 -16.77282 -16.45749 -16.09329 -15.73454 -15.67507 -14.96602 -14.72474 -14.60042 -14.42153 -14.21153 -13.95698 -13.82414 -13.73426 -13.46730 -13.30766 -13.20299 -13.08604 -12.91097 -12.75863 -12.64951 -12.58660 -12.44191 -12.41110 -11.77293 -11.76188 -11.69798 -11.61901 -11.17220 -10.91887 -10.76383 -10.32780 -10.19202 -9.91490 -9.59378 -8.72967 -8.37570 -6.17635 1.16066 1.38910 1.40925 1.41457 1.51856 1.54622 1.63057 1.81158 2.21766 2.24999 2.96334 3.17567 3.31481 3.60551 3.66046 3.84485 3.88243 3.96662 4.04915 4.05858 4.20444 4.27785 4.34412 4.39333 4.40254 4.45482 4.56783 4.58894 4.64742 4.68339 4.68915 4.77252 4.84530 4.92102 4.93123 5.01467 5.05431 5.07742 5.22191 5.25378 5.37650 5.39609 5.51898 5.78352 5.90519 6.16355 6.40087 6.62333 7.02741 7.08983 7.20408 8.71980 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017188 B = 0.001961 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.671126 B =14275.196096 C =15506.359603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.169 4.169 3 C -0.085 4.085 4 C -0.101 4.101 5 C -0.124 4.124 6 C 0.494 3.506 7 O -0.596 6.596 8 N -0.611 5.611 9 C 0.067 3.933 10 C 0.112 3.888 11 C 0.116 3.884 12 H 0.081 0.919 13 C -0.117 4.117 14 C 0.093 3.907 15 N -0.652 5.652 16 C 0.554 3.446 17 O -0.566 6.566 18 C -0.115 4.115 19 S -0.155 6.155 20 C -0.547 4.547 21 H 0.083 0.917 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 1.003 2.997 25 H -0.265 1.265 26 H -0.277 1.277 27 H -0.257 1.257 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.040 0.960 35 H 0.119 0.881 36 H 0.131 0.869 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.043 0.957 42 H 0.131 0.869 43 H 0.110 0.890 44 H 0.094 0.906 45 H 0.101 0.899 46 H 0.101 0.899 47 H 0.108 0.892 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.866 10.016 -32.996 35.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.187 4.187 3 C -0.122 4.122 4 C -0.139 4.139 5 C -0.163 4.163 6 C 0.284 3.716 7 O -0.476 6.476 8 N -0.344 5.344 9 C -0.074 4.074 10 C -0.013 4.013 11 C 0.012 3.988 12 H 0.099 0.901 13 C -0.155 4.155 14 C -0.028 4.028 15 N -0.390 5.390 16 C 0.343 3.657 17 O -0.444 6.444 18 C -0.266 4.266 19 S 0.072 5.928 20 C -0.694 4.694 21 H 0.102 0.898 22 C -0.193 4.193 23 N -0.549 5.549 24 Si 0.824 3.176 25 H -0.190 1.190 26 H -0.202 1.202 27 H -0.181 1.181 28 H 0.123 0.877 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.137 0.863 36 H 0.148 0.852 37 H 0.087 0.913 38 H 0.112 0.888 39 H 0.120 0.880 40 H 0.111 0.889 41 H 0.061 0.939 42 H 0.149 0.851 43 H 0.129 0.871 44 H 0.113 0.887 45 H 0.119 0.881 46 H 0.119 0.881 47 H 0.127 0.873 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.534 9.055 -31.564 34.193 hybrid contribution 1.786 -0.480 1.011 2.107 sum -7.748 8.574 -30.554 32.666 Atomic orbital electron populations 1.24014 0.95975 1.02518 1.01101 1.23126 0.96479 0.99143 0.99974 1.20743 0.97849 0.95336 0.98239 1.21251 0.97713 0.96593 0.98373 1.21756 0.97523 1.00528 0.96463 1.21790 0.81266 0.81295 0.87216 1.90770 1.69889 1.37130 1.49857 1.47959 1.41838 1.20880 1.23726 1.22242 1.04571 0.88626 0.91951 1.21479 0.90057 1.01790 0.87949 1.23229 0.91598 0.99508 0.84498 0.90143 1.23571 0.92475 0.97428 1.01979 1.23347 0.91884 0.98490 0.89111 1.49892 1.16232 1.67021 1.05814 1.19751 0.89426 0.75128 0.81377 1.90706 1.29553 1.49976 1.74181 1.23253 0.99048 1.06003 0.98332 1.85674 1.15402 1.89895 1.01840 1.23190 0.93469 1.54377 0.98399 0.89849 1.26200 1.02513 0.93585 0.96979 1.70203 1.30921 1.44090 1.09656 0.84891 0.76477 0.78536 0.77668 1.19005 1.20244 1.18119 0.87664 0.88286 0.87961 0.90141 0.88943 0.93071 0.94071 0.86276 0.85152 0.91296 0.88818 0.88008 0.88920 0.93857 0.85114 0.87129 0.88735 0.88101 0.88062 0.87344 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.56 14.32 67.79 0.97 -1.59 16 2 C -0.17 -2.37 9.52 25.66 0.24 -2.12 16 3 C -0.08 -0.92 5.66 29.85 0.17 -0.75 16 4 C -0.10 -1.70 4.49 30.60 0.14 -1.56 16 5 C -0.12 -1.50 4.38 29.85 0.13 -1.37 16 6 C 0.49 11.65 7.66 87.66 0.67 12.32 16 7 O -0.60 -22.33 15.54 -3.02 -0.05 -22.37 16 8 N -0.61 -11.29 2.87 -846.78 -2.43 -13.72 16 9 C 0.07 0.38 10.23 127.77 1.31 1.68 16 10 C 0.11 2.93 5.17 86.38 0.45 3.37 16 11 C 0.12 2.66 4.28 41.79 0.18 2.84 16 12 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 13 C -0.12 -1.24 7.09 30.97 0.22 -1.02 16 14 C 0.09 1.53 8.42 83.22 0.70 2.23 16 15 N -0.65 -19.34 3.57 -833.03 -2.97 -22.31 16 16 C 0.55 23.50 8.02 87.66 0.70 24.20 16 17 O -0.57 -29.98 15.21 -3.01 -0.05 -30.03 16 18 C -0.12 -5.04 5.99 71.24 0.43 -4.61 16 19 S -0.16 -9.18 20.57 -56.49 -1.16 -10.34 16 20 C -0.55 -32.40 9.50 67.95 0.65 -31.75 16 21 H 0.08 4.57 7.80 -2.91 -0.02 4.55 16 22 C 0.01 0.69 5.49 84.86 0.47 1.16 16 23 N -0.91 -57.85 13.22 21.65 0.29 -57.57 16 24 Si 1.00 44.62 29.55 68.60 2.03 46.65 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 27 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 28 H 0.11 1.11 7.84 -2.91 -0.02 1.09 16 29 H 0.10 1.16 8.06 -2.91 -0.02 1.14 16 30 H 0.10 1.50 8.06 -2.91 -0.02 1.48 16 31 H 0.08 0.67 7.79 -2.38 -0.02 0.66 16 32 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.05 1.05 8.10 -2.39 -0.02 1.04 16 34 H 0.04 0.93 8.10 -2.39 -0.02 0.91 16 35 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.13 0.62 7.24 -2.39 -0.02 0.61 16 37 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.09 0.21 7.11 -2.39 -0.02 0.19 16 39 H 0.10 0.02 6.48 -2.39 -0.02 0.01 16 40 H 0.09 2.10 7.84 -2.38 -0.02 2.09 16 41 H 0.04 1.72 6.21 -2.39 -0.01 1.71 16 42 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.11 0.95 7.94 -2.39 -0.02 0.93 16 44 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.10 4.10 8.14 -2.40 -0.02 4.08 16 47 H 0.11 4.22 8.14 -2.39 -0.02 4.20 16 48 H 0.27 15.93 8.31 -92.70 -0.77 15.16 16 Total: -1.00 -95.83 412.23 3.99 -91.84 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.92 Total: 14.83 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: 7.42 Total: 3.03 kcal Atomic # 7 Polarization: -88.48 SS G_CDS: -5.12 Total: -93.60 kcal Atomic # 8 Polarization: -52.31 SS G_CDS: -0.09 Total: -52.40 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 16 Polarization: -9.18 SS G_CDS: -1.16 Total: -10.34 kcal Total: -95.83 3.99 -91.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001702480674.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.645 kcal (2) G-P(sol) polarization free energy of solvation -95.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds