Wall clock time and date at job start Tue Mar 31 2020 23:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34770 * 120.00393 * 2 1 4 4 O 1.21281 * 120.00424 * 184.45484 * 3 2 1 5 5 C 1.50705 * 120.00051 * 4.44534 * 3 2 1 6 6 C 1.53869 * 110.03501 * 205.43781 * 5 3 2 7 7 C 1.54262 * 106.59990 * 240.71949 * 6 5 3 8 8 C 1.54889 * 104.19606 * 336.39003 * 7 6 5 9 9 C 1.54264 * 110.02754 * 88.27232 * 5 3 2 10 10 C 1.46501 * 119.99718 * 179.97438 * 2 1 3 11 11 H 1.09005 * 110.88884 * 176.12249 * 10 2 1 12 12 C 1.55154 * 111.00665 * 300.00630 * 10 2 1 13 13 C 1.54324 * 102.94459 * 153.57760 * 12 10 2 14 14 N 1.47020 * 107.26911 * 337.80158 * 13 12 10 15 15 C 1.34777 * 125.64740 * 178.95765 * 14 13 12 16 16 O 1.21285 * 119.99991 * 179.97438 * 15 14 13 17 17 C 1.50699 * 120.00220 * 359.97438 * 15 14 13 18 18 S 1.80998 * 109.47380 * 179.97438 * 17 15 14 19 19 C 1.76198 * 100.00007 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00255 * 359.97438 * 19 18 17 21 21 C 1.38803 * 119.99805 * 179.97438 * 19 18 17 22 22 N 1.31628 * 119.99821 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 120.00065 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.46787 * 90.00374 * 23 21 19 25 25 H 1.48498 * 109.47182 * 209.99928 * 23 21 19 26 26 H 1.48493 * 109.47280 * 330.00108 * 23 21 19 27 27 C 1.47424 * 108.70383 * 358.94351 * 14 13 12 28 28 H 1.09002 * 109.46459 * 93.57306 * 1 2 3 29 29 H 1.08996 * 109.47059 * 213.57193 * 1 2 3 30 30 H 1.09000 * 109.47012 * 333.57686 * 1 2 3 31 31 H 1.09000 * 110.05229 * 326.85974 * 5 3 2 32 32 H 1.09000 * 110.03415 * 0.02562 * 6 5 3 33 33 H 1.08996 * 110.03000 * 121.43273 * 6 5 3 34 34 H 1.08998 * 110.48904 * 95.06989 * 7 6 5 35 35 H 1.09005 * 110.48374 * 217.71543 * 7 6 5 36 36 H 1.08999 * 110.75390 * 279.62896 * 8 7 6 37 37 H 1.09000 * 110.91625 * 156.33661 * 8 7 6 38 38 H 1.09005 * 110.49034 * 261.57183 * 9 5 3 39 39 H 1.08997 * 110.48853 * 24.08687 * 9 5 3 40 40 H 1.09011 * 110.71898 * 271.93680 * 12 10 2 41 41 H 1.08998 * 110.72414 * 35.03319 * 12 10 2 42 42 H 1.08996 * 109.88731 * 97.22200 * 13 12 10 43 43 H 1.09001 * 109.88127 * 218.39000 * 13 12 10 44 44 H 1.08995 * 109.47126 * 299.99575 * 17 15 14 45 45 H 1.09008 * 109.46974 * 59.99347 * 17 15 14 46 46 H 0.97001 * 120.00296 * 180.02562 * 22 21 19 47 47 H 1.08994 * 110.36730 * 265.28392 * 27 14 13 48 48 H 1.09003 * 110.36344 * 142.96224 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3490 1.1687 -0.0816 5 6 1.3890 2.4703 0.1012 6 6 2.2138 3.6039 -0.5331 7 6 2.4828 4.6320 0.5851 8 6 1.3434 4.3898 1.6059 9 6 1.1855 2.8492 1.5827 10 6 2.1975 -1.2688 0.0006 11 1 3.2718 -1.0974 -0.0684 12 6 1.8482 -2.1120 1.2552 13 6 2.1062 -3.5583 0.7825 14 7 2.0263 -3.5584 -0.6855 15 6 2.2134 -4.6293 -1.4822 16 8 2.1223 -4.5128 -2.6860 17 6 2.5357 -5.9714 -0.8773 18 16 2.7268 -7.1971 -2.1954 19 6 3.0887 -8.6277 -1.2327 20 1 3.1337 -8.5569 -0.1560 21 6 3.3161 -9.8458 -1.8582 22 7 3.5870 -10.9144 -1.1391 23 14 3.2376 -9.9684 -3.7205 24 1 4.5834 -9.7064 -4.2909 25 1 2.7923 -11.3309 -4.1085 26 1 2.2748 -8.9656 -4.2425 27 6 1.7074 -2.1933 -1.1417 28 1 -0.3632 -0.0640 -1.0257 29 1 -0.3633 -0.8562 0.5683 30 1 -0.3633 0.9203 0.4573 31 1 0.4240 2.3859 -0.3986 32 1 3.1565 3.2114 -0.9145 33 1 1.6491 4.0696 -1.3407 34 1 3.4534 4.4490 1.0461 35 1 2.4321 5.6468 0.1904 36 1 0.4241 4.8773 1.2815 37 1 1.6314 4.7337 2.5993 38 1 0.1880 2.5629 1.9162 39 1 1.9451 2.3764 2.2051 40 1 2.5042 -1.8555 2.0872 41 1 0.8033 -1.9750 1.5335 42 1 3.0979 -3.8807 1.0998 43 1 1.3481 -4.2239 1.1951 44 1 3.4633 -5.9006 -0.3094 45 1 1.7258 -6.2749 -0.2139 46 1 3.7462 -11.7656 -1.5761 47 1 0.6326 -2.0826 -1.2848 48 1 2.2391 -1.9684 -2.0663 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001703447093.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:18 Heat of formation + Delta-G solvation = -73.538634 kcal Electronic energy + Delta-G solvation = -27186.610909 eV Core-core repulsion = 23367.379552 eV Total energy + Delta-G solvation = -3819.231357 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.97908 -39.75344 -37.96616 -37.04913 -35.36727 -32.44558 -31.63506 -29.87662 -29.70762 -29.16301 -28.15478 -27.18229 -25.61955 -23.74015 -22.62070 -21.20572 -20.58219 -19.51119 -19.11207 -18.16811 -17.76194 -16.97754 -16.63069 -16.08546 -15.59911 -15.47918 -15.22537 -14.92271 -14.85092 -14.28382 -14.00478 -13.91721 -13.77893 -13.63502 -13.30150 -13.07885 -12.85873 -12.73551 -12.66268 -12.28506 -12.05788 -11.97871 -11.79384 -11.71098 -11.55650 -11.52170 -11.27092 -11.25103 -11.07324 -11.00782 -10.90636 -10.62705 -10.06128 -9.86553 -9.58357 -9.12131 -9.00670 -8.62366 -8.50911 -6.93085 -6.29392 -4.01387 2.20974 2.34369 2.75968 2.90885 3.21406 3.33442 3.50427 3.59110 3.93859 4.09396 4.11660 4.21115 4.30649 4.33148 4.53387 4.60861 4.68326 4.69727 4.84479 4.86430 4.97256 4.98677 5.00157 5.03113 5.09679 5.11128 5.17409 5.19976 5.26149 5.34241 5.43792 5.47579 5.50002 5.56802 5.63162 5.67237 5.67821 5.72978 5.81408 5.84170 5.90671 5.99380 6.04672 6.29528 6.93779 7.50062 7.78494 7.93589 8.38308 8.41033 9.16734 10.79747 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.035939 B = 0.001911 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.908851 B =14651.424319 C =14906.427999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.607 5.607 3 C 0.523 3.477 4 O -0.533 6.533 5 C -0.114 4.114 6 C -0.116 4.116 7 C -0.123 4.123 8 C -0.123 4.123 9 C -0.110 4.110 10 C 0.127 3.873 11 H 0.118 0.882 12 C -0.141 4.141 13 C 0.103 3.897 14 N -0.624 5.624 15 C 0.549 3.451 16 O -0.516 6.516 17 C -0.117 4.117 18 S -0.142 6.142 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.102 3.898 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.271 0.729 47 H 0.069 0.931 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.979 31.156 8.654 33.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.339 5.339 3 C 0.311 3.689 4 O -0.409 6.409 5 C -0.135 4.135 6 C -0.154 4.154 7 C -0.161 4.161 8 C -0.161 4.161 9 C -0.148 4.148 10 C 0.022 3.978 11 H 0.136 0.864 12 C -0.180 4.180 13 C -0.021 4.021 14 N -0.362 5.362 15 C 0.337 3.663 16 O -0.390 6.390 17 C -0.268 4.268 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.022 4.022 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.081 0.919 47 H 0.088 0.912 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.415 31.041 6.765 32.866 hybrid contribution -0.021 -0.649 0.785 1.019 sum -8.436 30.392 7.550 32.432 Atomic orbital electron populations 1.21920 0.79304 1.03607 1.02539 1.47688 1.07050 1.05334 1.73861 1.20705 0.87994 0.85122 0.75086 1.90699 1.14253 1.86975 1.48969 1.22012 1.00007 0.92625 0.98854 1.22146 1.00870 0.94394 0.97986 1.22350 0.98969 0.98740 0.96021 1.22499 0.98985 0.94958 0.99644 1.22300 1.02129 0.96768 0.93555 1.22233 0.98658 0.82329 0.94574 0.86432 1.23017 1.03112 0.93786 0.98098 1.22009 1.02653 0.96928 0.80505 1.48342 1.72512 1.08330 1.06987 1.20013 0.75726 0.84264 0.86282 1.90714 1.49726 1.84434 1.14115 1.23251 1.05151 0.94387 1.03979 1.84802 1.93068 1.03047 1.10661 1.22302 1.55484 0.93113 0.95968 0.89360 1.24707 0.93203 0.94462 0.98909 1.69936 1.45640 0.99990 1.36064 0.86736 0.80657 0.79199 0.85274 1.19181 1.19921 1.15938 1.22356 1.00661 0.81370 0.97843 0.92013 0.90536 0.90333 0.88710 0.89806 0.91346 0.91298 0.91456 0.91207 0.91203 0.90914 0.91035 0.89451 0.89968 0.90666 0.90673 0.88466 0.88468 0.91933 0.91250 0.89953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.33 8.76 59.85 0.52 0.86 16 2 N -0.61 -4.91 2.91 -171.47 -0.50 -5.41 16 3 C 0.52 5.00 6.64 -10.99 -0.07 4.93 16 4 O -0.53 -7.24 14.96 5.56 0.08 -7.16 16 5 C -0.11 -0.73 2.39 -90.66 -0.22 -0.95 16 6 C -0.12 -0.81 6.33 -25.62 -0.16 -0.97 16 7 C -0.12 -0.73 6.83 -25.07 -0.17 -0.90 16 8 C -0.12 -0.58 6.91 -24.74 -0.17 -0.75 16 9 C -0.11 -0.57 6.13 -25.07 -0.15 -0.73 16 10 C 0.13 1.23 3.46 -65.78 -0.23 1.00 16 11 H 0.12 1.40 7.02 -51.93 -0.36 1.03 16 12 C -0.14 -1.09 6.52 -24.90 -0.16 -1.25 16 13 C 0.10 1.03 6.49 -3.06 -0.02 1.01 16 14 N -0.62 -8.63 3.33 -170.52 -0.57 -9.19 16 15 C 0.55 10.19 7.87 -10.99 -0.09 10.10 16 16 O -0.52 -11.53 16.12 5.55 0.09 -11.45 16 17 C -0.12 -2.31 5.35 36.00 0.19 -2.12 16 18 S -0.14 -3.64 18.55 -107.50 -1.99 -5.64 16 19 C -0.52 -15.05 10.04 30.94 0.31 -14.74 16 20 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 21 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 22 N -0.88 -26.55 13.97 55.49 0.78 -25.78 16 23 Si 0.86 21.89 27.74 -169.99 -4.71 17.17 16 24 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 27 C 0.10 1.20 6.46 -2.53 -0.02 1.18 16 28 H 0.06 0.29 7.97 -51.93 -0.41 -0.12 16 29 H 0.08 0.32 6.39 -51.93 -0.33 -0.01 16 30 H 0.08 0.23 5.65 -51.93 -0.29 -0.06 16 31 H 0.09 0.43 6.58 -51.93 -0.34 0.09 16 32 H 0.08 0.79 6.72 -51.93 -0.35 0.44 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.26 7.78 -51.93 -0.40 -0.14 16 39 H 0.07 0.48 7.85 -51.93 -0.41 0.07 16 40 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 41 H 0.08 0.51 6.37 -51.93 -0.33 0.18 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 45 H 0.10 1.78 8.14 -51.91 -0.42 1.35 16 46 H 0.27 7.59 8.31 -40.82 -0.34 7.26 16 47 H 0.07 0.73 6.92 -51.93 -0.36 0.37 16 48 H 0.08 1.13 8.04 -51.93 -0.42 0.72 16 LS Contribution 389.23 15.07 5.87 5.87 Total: -1.00 -36.00 389.23 -9.31 -45.31 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -7.82 Total: -3.11 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -0.53 Total: -0.61 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: -0.29 Total: -40.38 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: 0.17 Total: -18.61 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.71 Total: 17.17 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.00 -9.31 -45.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703447093.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.231 kcal (2) G-P(sol) polarization free energy of solvation -36.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds