Wall clock time and date at job start Tue Mar 31 2020 22:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 120.00689 * 2 1 4 4 C 1.53004 * 109.46749 * 89.99632 * 3 2 1 5 5 N 1.46501 * 109.46891 * 180.02562 * 4 3 2 6 6 C 1.34779 * 120.00022 * 180.02562 * 5 4 3 7 7 O 1.21274 * 119.99932 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99818 * 179.97438 * 6 5 4 9 9 S 1.80997 * 109.46958 * 179.97438 * 8 6 5 10 10 C 1.76200 * 100.00078 * 180.02562 * 9 8 6 11 11 H 1.08001 * 120.00273 * 0.02562 * 10 9 8 12 12 C 1.38798 * 120.00283 * 180.02562 * 10 9 8 13 13 N 1.31637 * 119.99876 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00281 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47060 * 89.99622 * 14 12 10 16 16 H 1.48498 * 109.47259 * 209.99641 * 14 12 10 17 17 H 1.48502 * 109.46916 * 329.99641 * 14 12 10 18 18 C 1.34783 * 119.99588 * 179.97438 * 2 1 3 19 19 O 1.21280 * 119.99757 * 184.44133 * 18 2 1 20 20 C 1.50699 * 120.00099 * 4.45017 * 18 2 1 21 21 H 1.08999 * 109.26763 * 45.21987 * 20 18 2 22 22 C 1.52875 * 109.26170 * 285.75017 * 20 18 2 23 23 C 1.50976 * 109.81892 * 186.20962 * 22 20 18 24 24 C 1.52889 * 109.13724 * 73.34291 * 23 22 20 25 25 C 1.52708 * 110.14855 * 305.98402 * 24 23 22 26 26 H 1.09000 * 115.39058 * 231.20927 * 25 24 23 27 27 C 1.51361 * 115.51499 * 90.57502 * 25 24 23 28 28 C 1.52065 * 120.52626 * 21.47577 * 25 24 23 29 29 H 1.09001 * 115.93091 * 209.98973 * 28 25 24 30 30 H 1.09001 * 109.46711 * 84.45373 * 1 2 3 31 31 H 1.08997 * 109.47700 * 204.45676 * 1 2 3 32 32 H 1.09000 * 109.47107 * 324.45835 * 1 2 3 33 33 H 1.09000 * 109.46756 * 330.00300 * 3 2 1 34 34 H 1.08991 * 109.47382 * 209.99882 * 3 2 1 35 35 H 1.09000 * 109.46946 * 60.00785 * 4 3 2 36 36 H 1.09000 * 109.47393 * 300.00064 * 4 3 2 37 37 H 0.97005 * 119.99802 * 0.28036 * 5 4 3 38 38 H 1.08994 * 109.47692 * 300.00342 * 8 6 5 39 39 H 1.09006 * 109.47271 * 60.00342 * 8 6 5 40 40 H 0.96993 * 119.99825 * 180.02562 * 13 12 10 41 41 H 1.08999 * 109.62349 * 304.57123 * 22 20 18 42 42 H 1.09000 * 109.62022 * 65.11653 * 22 20 18 43 43 H 1.08996 * 108.92506 * 313.69420 * 23 22 20 44 44 H 1.08996 * 109.90491 * 193.57761 * 23 22 20 45 45 H 1.09001 * 109.35526 * 185.77883 * 24 23 22 46 46 H 1.08997 * 109.35768 * 66.19615 * 24 23 22 47 47 H 1.08998 * 117.72397 * 140.47002 * 27 25 24 48 48 H 1.09001 * 117.06036 * 355.70910 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7103 1.4426 5 7 3.1847 2.9792 1.4426 6 6 3.5220 3.5626 2.6098 7 8 3.2190 3.0373 3.6601 8 6 4.2756 4.8676 2.6098 9 16 4.5771 5.3902 4.3163 10 6 5.4455 6.8956 4.0264 11 1 5.6345 7.2240 3.0150 12 6 5.8869 7.6596 5.0978 13 7 5.6563 7.2598 6.3306 14 14 6.8070 9.2560 4.7905 15 1 5.8379 10.3783 4.7100 16 1 7.7577 9.5018 5.9045 17 1 7.5570 9.1569 3.5126 18 6 2.1388 -1.1673 0.0005 19 8 3.3489 -1.1689 0.0819 20 6 1.3886 -2.4704 -0.1002 21 1 0.6320 -2.3905 -0.8806 22 6 0.7055 -2.7636 1.2357 23 6 0.0778 -4.1362 1.1992 24 6 1.1793 -5.1934 1.2792 25 6 2.2185 -4.9540 0.1862 26 1 2.4580 -5.8213 -0.4290 27 6 3.3775 -4.0606 0.5729 28 6 2.3617 -3.5834 -0.4566 29 1 2.7009 -3.5758 -1.4925 30 1 -0.3633 0.0993 -1.0229 31 1 -0.3634 -0.9354 0.4254 32 1 -0.3633 0.8362 0.5974 33 1 1.6086 2.0283 -0.5138 34 1 3.1500 1.1383 -0.5138 35 1 3.0416 0.9506 1.9564 36 1 1.5001 1.8407 1.9564 37 1 3.4234 3.4014 0.6025 38 1 5.2278 4.7374 2.0957 39 1 3.6864 5.6275 2.0963 40 1 5.9644 7.7939 7.0793 41 1 1.4463 -2.7555 2.0352 42 1 -0.0558 -2.0084 1.4310 43 1 -0.4708 -4.2493 0.2642 44 1 -0.6048 -4.2545 2.0408 45 1 0.7405 -6.1828 1.1501 46 1 1.6620 -5.1391 2.2550 47 1 4.3697 -4.3329 0.2132 48 1 3.3438 -3.6052 1.5627 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704182437.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:37 Heat of formation + Delta-G solvation = -52.458417 kcal Electronic energy + Delta-G solvation = -26822.862494 eV Core-core repulsion = 23004.545244 eV Total energy + Delta-G solvation = -3818.317250 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.15433 -39.32811 -38.77981 -36.23621 -34.60369 -33.60940 -32.41349 -31.85333 -30.24772 -28.34970 -27.04111 -25.56934 -25.35836 -23.58904 -22.78054 -21.65555 -20.52135 -19.70767 -18.65922 -17.83936 -17.37079 -16.96340 -16.48127 -16.34704 -15.71644 -15.35689 -15.27884 -14.79053 -14.49195 -14.28428 -14.19578 -14.05086 -13.84617 -13.68693 -13.35540 -13.12983 -12.99475 -12.80107 -12.53635 -12.38545 -12.24813 -12.03595 -11.73420 -11.49632 -11.36488 -11.22982 -11.05070 -11.01004 -10.75854 -10.73377 -10.45301 -10.12459 -9.81521 -9.76380 -9.42801 -9.05710 -9.03085 -8.88399 -8.21873 -6.48373 -6.20184 -3.90659 2.32437 2.47982 3.11155 3.12426 3.23443 3.29556 3.34817 3.47026 3.81106 4.08888 4.20387 4.21810 4.26247 4.48922 4.59180 4.66430 4.69391 4.71498 4.79680 4.83166 4.99563 5.00433 5.04404 5.14849 5.16018 5.19004 5.22449 5.24647 5.29932 5.50851 5.56959 5.61436 5.63929 5.70162 5.75312 5.76479 5.83183 5.86457 5.91554 5.94227 5.97203 6.14139 6.16225 6.61176 7.00776 7.61008 7.70332 7.89694 8.36730 8.62835 9.25024 10.87271 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025107 B = 0.001774 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.955704 B =15779.742143 C =15998.076485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.616 5.616 3 C 0.107 3.893 4 C 0.109 3.891 5 N -0.737 5.737 6 C 0.533 3.467 7 O -0.517 6.517 8 C -0.153 4.153 9 S -0.061 6.061 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.517 3.483 19 O -0.521 6.521 20 C -0.069 4.069 21 H 0.097 0.903 22 C -0.122 4.122 23 C -0.116 4.116 24 C -0.092 4.092 25 C -0.149 4.149 26 H 0.102 0.898 27 C -0.157 4.157 28 C -0.127 4.127 29 H 0.101 0.899 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.398 0.602 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.268 0.732 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.092 0.908 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.469 -23.054 -18.239 32.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.350 5.350 3 C -0.017 4.017 4 C -0.017 4.017 5 N -0.392 5.392 6 C 0.319 3.681 7 O -0.391 6.391 8 C -0.303 4.303 9 S 0.166 5.834 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.746 3.254 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.197 1.197 18 C 0.305 3.695 19 O -0.395 6.395 20 C -0.090 4.090 21 H 0.115 0.885 22 C -0.159 4.159 23 C -0.154 4.154 24 C -0.129 4.129 25 C -0.167 4.167 26 H 0.120 0.880 27 C -0.194 4.194 28 C -0.145 4.145 29 H 0.119 0.881 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.232 0.768 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.110 0.890 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.290 -23.917 -16.234 32.245 hybrid contribution 1.019 1.965 -1.891 2.911 sum -13.271 -21.952 -18.125 31.409 Atomic orbital electron populations 1.22146 0.79235 1.04296 1.02253 1.47729 1.07091 1.05620 1.74570 1.21568 0.98443 0.85111 0.96567 1.21554 0.97100 0.86351 0.96701 1.45845 1.60339 1.24038 1.09010 1.20304 0.78716 0.85989 0.83108 1.90701 1.53038 1.64324 1.31012 1.23526 1.02100 0.96217 1.08497 1.85407 1.73562 1.27151 0.97282 1.22871 1.42000 1.07958 0.95505 0.90908 1.25001 0.95827 0.98382 0.94437 1.70022 1.44071 1.38154 0.98051 0.86158 0.79266 0.81947 0.78068 1.20287 1.20755 1.19696 1.20719 0.88059 0.84982 0.75788 1.90737 1.14028 1.86980 1.47792 1.20573 0.97393 0.91301 0.99749 0.88483 1.21371 1.00396 0.98198 0.95958 1.21136 0.97752 0.94014 1.02466 1.21096 0.95321 0.98920 0.97554 1.21960 0.99878 0.93624 1.01273 0.87983 1.22646 0.94326 1.02447 0.99964 1.21343 1.01015 0.93473 0.98680 0.88099 0.92314 0.89664 0.90719 0.89845 0.89228 0.91234 0.91720 0.76822 0.89138 0.89180 0.92196 0.91050 0.90227 0.91543 0.91152 0.91439 0.91458 0.88969 0.88760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.31 9.99 59.84 0.60 0.91 16 2 N -0.62 -5.19 2.87 -181.58 -0.52 -5.71 16 3 C 0.11 0.97 5.51 -4.04 -0.02 0.95 16 4 C 0.11 1.37 6.00 -4.04 -0.02 1.35 16 5 N -0.74 -10.22 5.56 -60.29 -0.33 -10.56 16 6 C 0.53 10.30 7.85 -10.98 -0.09 10.21 16 7 O -0.52 -12.20 15.86 5.56 0.09 -12.11 16 8 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 10 C -0.54 -15.41 9.50 30.94 0.29 -15.12 16 11 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 12 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 13 N -0.87 -26.43 13.22 55.49 0.73 -25.69 16 14 Si 0.92 21.60 29.55 -169.99 -5.02 16.57 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 C 0.52 5.32 6.87 -10.98 -0.08 5.24 16 19 O -0.52 -7.48 15.10 5.56 0.08 -7.40 16 20 C -0.07 -0.50 1.82 -92.31 -0.17 -0.67 16 21 H 0.10 0.52 7.60 -51.93 -0.39 0.12 16 22 C -0.12 -0.78 4.56 -27.81 -0.13 -0.91 16 23 C -0.12 -0.60 5.84 -27.81 -0.16 -0.76 16 24 C -0.09 -0.54 5.79 -26.94 -0.16 -0.69 16 25 C -0.15 -1.03 6.13 -92.07 -0.56 -1.60 16 26 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 27 C -0.16 -1.43 8.71 -27.92 -0.24 -1.67 16 28 C -0.13 -1.03 4.94 -91.93 -0.45 -1.49 16 29 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.32 3.96 -51.93 -0.21 0.12 16 32 H 0.07 0.35 8.11 -51.93 -0.42 -0.07 16 33 H 0.08 0.56 8.07 -51.93 -0.42 0.14 16 34 H 0.09 0.92 7.49 -51.93 -0.39 0.53 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.40 4.17 8.47 -40.82 -0.35 3.83 16 38 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 39 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 40 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.07 0.60 7.05 -51.93 -0.37 0.23 16 42 H 0.08 0.41 5.48 -51.93 -0.28 0.12 16 43 H 0.07 0.29 8.04 -51.93 -0.42 -0.12 16 44 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 0.43 8.02 -51.93 -0.42 0.02 16 47 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.09 0.98 7.24 -51.93 -0.38 0.60 16 LS Contribution 396.30 15.07 5.97 5.97 Total: -1.00 -37.22 396.30 -10.09 -47.30 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -7.81 Total: 0.67 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -1.06 Total: -5.16 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: -0.12 Total: -41.96 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: 0.17 Total: -19.51 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.22 -10.09 -47.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704182437.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.155 kcal (2) G-P(sol) polarization free energy of solvation -37.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds