Wall clock time and date at job start Tue Mar 31 2020 22:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 120.00689 * 2 1 4 4 C 1.53004 * 109.46749 * 89.99632 * 3 2 1 5 5 N 1.46501 * 109.46891 * 180.02562 * 4 3 2 6 6 C 1.34779 * 120.00022 * 180.02562 * 5 4 3 7 7 O 1.21274 * 119.99932 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99818 * 179.97438 * 6 5 4 9 9 S 1.80997 * 109.46958 * 179.97438 * 8 6 5 10 10 C 1.76200 * 100.00078 * 180.02562 * 9 8 6 11 11 H 1.08001 * 120.00273 * 0.02562 * 10 9 8 12 12 C 1.38798 * 120.00283 * 180.02562 * 10 9 8 13 13 N 1.31637 * 119.99876 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00281 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47060 * 89.99622 * 14 12 10 16 16 H 1.48498 * 109.47259 * 209.99641 * 14 12 10 17 17 H 1.48502 * 109.46916 * 329.99641 * 14 12 10 18 18 C 1.34783 * 119.99588 * 179.97438 * 2 1 3 19 19 O 1.21280 * 119.99757 * 184.44133 * 18 2 1 20 20 C 1.50699 * 120.00099 * 4.45017 * 18 2 1 21 21 H 1.08999 * 109.26763 * 45.21987 * 20 18 2 22 22 C 1.52875 * 109.26170 * 285.75017 * 20 18 2 23 23 C 1.50976 * 109.81892 * 186.20962 * 22 20 18 24 24 C 1.52889 * 109.13724 * 73.34291 * 23 22 20 25 25 C 1.52708 * 110.14855 * 305.98402 * 24 23 22 26 26 H 1.09000 * 115.39058 * 231.20927 * 25 24 23 27 27 C 1.51361 * 115.51499 * 90.57502 * 25 24 23 28 28 C 1.52065 * 120.52626 * 21.47577 * 25 24 23 29 29 H 1.09001 * 115.93091 * 209.98973 * 28 25 24 30 30 H 1.09001 * 109.46711 * 84.45373 * 1 2 3 31 31 H 1.08997 * 109.47700 * 204.45676 * 1 2 3 32 32 H 1.09000 * 109.47107 * 324.45835 * 1 2 3 33 33 H 1.09000 * 109.46756 * 330.00300 * 3 2 1 34 34 H 1.08991 * 109.47382 * 209.99882 * 3 2 1 35 35 H 1.09000 * 109.46946 * 60.00785 * 4 3 2 36 36 H 1.09000 * 109.47393 * 300.00064 * 4 3 2 37 37 H 0.97005 * 119.99802 * 0.28036 * 5 4 3 38 38 H 1.08994 * 109.47692 * 300.00342 * 8 6 5 39 39 H 1.09006 * 109.47271 * 60.00342 * 8 6 5 40 40 H 0.96993 * 119.99825 * 180.02562 * 13 12 10 41 41 H 1.08999 * 109.62349 * 304.57123 * 22 20 18 42 42 H 1.09000 * 109.62022 * 65.11653 * 22 20 18 43 43 H 1.08996 * 108.92506 * 313.69420 * 23 22 20 44 44 H 1.08996 * 109.90491 * 193.57761 * 23 22 20 45 45 H 1.09001 * 109.35526 * 185.77883 * 24 23 22 46 46 H 1.08997 * 109.35768 * 66.19615 * 24 23 22 47 47 H 1.08998 * 117.72397 * 140.47002 * 27 25 24 48 48 H 1.09001 * 117.06036 * 355.70910 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7103 1.4426 5 7 3.1847 2.9792 1.4426 6 6 3.5220 3.5626 2.6098 7 8 3.2190 3.0373 3.6601 8 6 4.2756 4.8676 2.6098 9 16 4.5771 5.3902 4.3163 10 6 5.4455 6.8956 4.0264 11 1 5.6345 7.2240 3.0150 12 6 5.8869 7.6596 5.0978 13 7 5.6563 7.2598 6.3306 14 14 6.8070 9.2560 4.7905 15 1 5.8379 10.3783 4.7100 16 1 7.7577 9.5018 5.9045 17 1 7.5570 9.1569 3.5126 18 6 2.1388 -1.1673 0.0005 19 8 3.3489 -1.1689 0.0819 20 6 1.3886 -2.4704 -0.1002 21 1 0.6320 -2.3905 -0.8806 22 6 0.7055 -2.7636 1.2357 23 6 0.0778 -4.1362 1.1992 24 6 1.1793 -5.1934 1.2792 25 6 2.2185 -4.9540 0.1862 26 1 2.4580 -5.8213 -0.4290 27 6 3.3775 -4.0606 0.5729 28 6 2.3617 -3.5834 -0.4566 29 1 2.7009 -3.5758 -1.4925 30 1 -0.3633 0.0993 -1.0229 31 1 -0.3634 -0.9354 0.4254 32 1 -0.3633 0.8362 0.5974 33 1 1.6086 2.0283 -0.5138 34 1 3.1500 1.1383 -0.5138 35 1 3.0416 0.9506 1.9564 36 1 1.5001 1.8407 1.9564 37 1 3.4234 3.4014 0.6025 38 1 5.2278 4.7374 2.0957 39 1 3.6864 5.6275 2.0963 40 1 5.9644 7.7939 7.0793 41 1 1.4463 -2.7555 2.0352 42 1 -0.0558 -2.0084 1.4310 43 1 -0.4708 -4.2493 0.2642 44 1 -0.6048 -4.2545 2.0408 45 1 0.7405 -6.1828 1.1501 46 1 1.6620 -5.1391 2.2550 47 1 4.3697 -4.3329 0.2132 48 1 3.3438 -3.6052 1.5627 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704182437.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:36 Heat of formation + Delta-G solvation = -77.743540 kcal Electronic energy + Delta-G solvation = -26823.958939 eV Core-core repulsion = 23004.545244 eV Total energy + Delta-G solvation = -3819.413695 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.83280 -40.67494 -39.63572 -37.15181 -35.74527 -34.59356 -34.25022 -32.57778 -31.49907 -29.46932 -27.73747 -27.58450 -26.09653 -24.44567 -23.39526 -22.35124 -21.91879 -20.48781 -19.82019 -19.25164 -18.12171 -17.88808 -17.58531 -17.45281 -16.88836 -16.72389 -16.64270 -16.25469 -15.70926 -15.28451 -15.01593 -14.89112 -14.71912 -14.64527 -14.49614 -14.36973 -13.92055 -13.62632 -13.59233 -13.26794 -13.17895 -13.15676 -12.90443 -12.86107 -12.61809 -12.37096 -12.29704 -12.07741 -11.75841 -11.73436 -11.29650 -11.15008 -11.10529 -11.07011 -10.72190 -10.45350 -10.29504 -10.22080 -9.76186 -8.68712 -8.35508 -6.14188 1.23141 1.42279 1.43349 1.53878 1.55740 1.59266 1.81877 2.26310 2.40683 2.85597 2.98567 3.31040 3.49888 3.62647 3.71730 3.81041 3.89494 3.98408 4.02624 4.05412 4.16519 4.22060 4.28266 4.29643 4.35617 4.47486 4.48619 4.51570 4.62692 4.69327 4.72308 4.77678 4.83373 4.88422 4.95589 5.05373 5.10229 5.17893 5.26603 5.29557 5.31483 5.36064 5.41083 5.47739 5.51608 6.19090 6.33024 6.43651 7.05547 7.14331 7.18971 8.73832 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025107 B = 0.001774 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.955704 B =15779.742143 C =15998.076485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.613 5.613 3 C 0.115 3.885 4 C 0.114 3.886 5 N -0.709 5.709 6 C 0.533 3.467 7 O -0.568 6.568 8 C -0.128 4.128 9 S -0.154 6.154 10 C -0.546 4.546 11 H 0.084 0.916 12 C 0.011 3.989 13 N -0.912 5.912 14 Si 1.001 2.999 15 H -0.266 1.266 16 H -0.278 1.278 17 H -0.258 1.258 18 C 0.509 3.491 19 O -0.573 6.573 20 C -0.063 4.063 21 H 0.128 0.872 22 C -0.120 4.120 23 C -0.112 4.112 24 C -0.095 4.095 25 C -0.127 4.127 26 H 0.115 0.885 27 C -0.182 4.182 28 C -0.131 4.131 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.121 0.879 34 H 0.078 0.922 35 H 0.033 0.967 36 H 0.066 0.934 37 H 0.419 0.581 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.271 0.729 41 H 0.041 0.959 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.055 0.945 47 H 0.083 0.917 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.359 -22.658 -21.266 35.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.346 5.346 3 C -0.009 4.009 4 C -0.011 4.011 5 N -0.364 5.364 6 C 0.319 3.681 7 O -0.446 6.446 8 C -0.279 4.279 9 S 0.073 5.927 10 C -0.693 4.693 11 H 0.102 0.898 12 C -0.193 4.193 13 N -0.548 5.548 14 Si 0.822 3.178 15 H -0.191 1.191 16 H -0.204 1.204 17 H -0.182 1.182 18 C 0.298 3.702 19 O -0.451 6.451 20 C -0.084 4.084 21 H 0.146 0.854 22 C -0.157 4.157 23 C -0.149 4.149 24 C -0.133 4.133 25 C -0.145 4.145 26 H 0.133 0.867 27 C -0.219 4.219 28 C -0.150 4.150 29 H 0.118 0.882 30 H 0.102 0.898 31 H 0.116 0.884 32 H 0.099 0.901 33 H 0.139 0.861 34 H 0.097 0.903 35 H 0.051 0.949 36 H 0.084 0.916 37 H 0.257 0.743 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.115 0.885 43 H 0.102 0.898 44 H 0.099 0.901 45 H 0.103 0.897 46 H 0.073 0.927 47 H 0.102 0.898 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.228 -23.527 -19.332 34.505 hybrid contribution 1.571 1.758 -1.009 2.565 sum -14.656 -21.769 -20.341 33.203 Atomic orbital electron populations 1.22430 0.76661 1.05302 1.04124 1.47867 1.08657 1.04752 1.73351 1.21504 0.99101 0.86464 0.93852 1.21594 0.95991 0.84458 0.99103 1.45544 1.58724 1.23877 1.08292 1.20135 0.78512 0.85639 0.83786 1.90690 1.55268 1.65482 1.33138 1.23361 1.03738 0.97468 1.03350 1.85615 1.74190 1.28356 1.04574 1.23207 1.42012 1.07904 0.96225 0.89766 1.26167 0.96642 1.02529 0.93979 1.70192 1.45404 1.39978 0.99252 0.84921 0.77820 0.76614 0.78416 1.19126 1.20363 1.18213 1.21343 0.87681 0.86387 0.74788 1.90715 1.16376 1.87775 1.50277 1.20631 0.97422 0.89212 1.01141 0.85389 1.21387 1.00006 0.99862 0.94443 1.21137 0.97459 0.92435 1.03875 1.21161 0.95345 1.00308 0.96449 1.22057 0.98380 0.93257 1.00848 0.86725 1.22562 0.95020 1.04883 0.99476 1.21453 1.00684 0.94654 0.98171 0.88181 0.89828 0.88449 0.90141 0.86114 0.90320 0.94862 0.91571 0.74340 0.87290 0.86576 0.91990 0.93970 0.88546 0.89757 0.90052 0.89687 0.92674 0.89842 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.36 9.99 127.77 1.28 1.64 16 2 N -0.61 -9.27 2.87 -846.77 -2.43 -11.70 16 3 C 0.11 1.89 5.51 86.38 0.48 2.36 16 4 C 0.11 2.83 6.00 86.38 0.52 3.34 16 5 N -0.71 -18.78 5.56 -463.06 -2.57 -21.36 16 6 C 0.53 20.55 7.85 87.66 0.69 21.24 16 7 O -0.57 -27.66 15.86 -3.01 -0.05 -27.71 16 8 C -0.13 -5.17 6.16 71.24 0.44 -4.73 16 9 S -0.15 -8.76 20.57 -56.49 -1.16 -9.92 16 10 C -0.55 -31.52 9.50 67.95 0.65 -30.87 16 11 H 0.08 4.49 7.80 -2.91 -0.02 4.47 16 12 C 0.01 0.66 5.49 84.86 0.47 1.13 16 13 N -0.91 -56.71 13.22 21.65 0.29 -56.42 16 14 Si 1.00 43.99 29.55 68.60 2.03 46.02 16 15 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 16 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 17 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 18 C 0.51 10.29 6.87 87.66 0.60 10.89 16 19 O -0.57 -17.27 15.10 -3.03 -0.05 -17.31 16 20 C -0.06 -0.84 1.82 -11.89 -0.02 -0.86 16 21 H 0.13 0.92 7.60 -2.39 -0.02 0.90 16 22 C -0.12 -1.38 4.56 29.89 0.14 -1.25 16 23 C -0.11 -0.88 5.84 29.90 0.17 -0.71 16 24 C -0.10 -1.00 5.79 30.46 0.18 -0.82 16 25 C -0.13 -1.67 6.13 -11.74 -0.07 -1.75 16 26 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 27 C -0.18 -3.61 8.71 29.83 0.26 -3.35 16 28 C -0.13 -2.09 4.94 -11.64 -0.06 -2.15 16 29 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.10 0.40 3.96 -2.39 -0.01 0.39 16 32 H 0.08 0.49 8.11 -2.39 -0.02 0.47 16 33 H 0.12 1.14 8.07 -2.39 -0.02 1.12 16 34 H 0.08 1.53 7.49 -2.39 -0.02 1.51 16 35 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 37 H 0.42 7.68 8.47 -92.70 -0.79 6.89 16 38 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 39 H 0.12 4.09 8.14 -2.39 -0.02 4.07 16 40 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 41 H 0.04 0.74 7.05 -2.39 -0.02 0.73 16 42 H 0.10 0.76 5.48 -2.39 -0.01 0.75 16 43 H 0.08 0.42 8.04 -2.39 -0.02 0.40 16 44 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.05 0.72 8.02 -2.39 -0.02 0.70 16 47 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.07 1.72 7.24 -2.39 -0.02 1.70 16 Total: -1.00 -86.48 396.30 1.94 -84.54 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.18 Total: 19.74 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 5.71 Total: -5.87 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -4.72 Total: -89.48 kcal Atomic # 8 Polarization: -44.93 SS G_CDS: -0.09 Total: -45.02 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: -8.76 SS G_CDS: -1.16 Total: -9.92 kcal Total: -86.48 1.94 -84.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704182437.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.796 kcal (2) G-P(sol) polarization free energy of solvation -86.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds