Wall clock time and date at job start Tue Mar 31 2020 22:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50709 * 119.99769 * 2 1 4 4 C 1.52999 * 109.46736 * 125.13931 * 3 2 1 5 5 C 1.50697 * 112.85256 * 304.52210 * 4 3 2 6 6 O 1.21287 * 119.99767 * 115.92436 * 5 4 3 7 7 N 1.34772 * 120.00146 * 295.64177 * 5 4 3 8 8 C 1.46505 * 120.00137 * 355.35969 * 7 5 4 9 9 C 1.46502 * 120.00124 * 175.35299 * 7 5 4 10 10 C 1.53006 * 109.46904 * 90.00593 * 9 7 5 11 11 N 1.46502 * 109.46904 * 180.02562 * 10 9 7 12 12 C 1.34776 * 119.99381 * 179.97438 * 11 10 9 13 13 O 1.21280 * 120.00577 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99602 * 180.02562 * 12 11 10 15 15 S 1.81004 * 109.47332 * 180.02562 * 14 12 11 16 16 C 1.76197 * 100.00188 * 180.02562 * 15 14 12 17 17 H 1.08003 * 120.00050 * 359.97438 * 16 15 14 18 18 C 1.38799 * 120.00179 * 179.97438 * 16 15 14 19 19 N 1.31631 * 119.99652 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00085 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47228 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46623 * 120.00032 * 20 18 16 23 23 H 1.48496 * 109.47192 * 239.99955 * 20 18 16 24 24 C 1.53787 * 113.69122 * 75.79571 * 4 3 2 25 25 C 1.53785 * 87.07937 * 89.12340 * 24 4 3 26 26 C 1.53775 * 87.08219 * 25.43306 * 25 24 4 27 27 H 1.08003 * 120.00226 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.99758 * 180.02562 * 1 2 3 29 29 H 1.08003 * 120.00226 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.46814 * 5.14636 * 3 2 1 31 31 H 1.08995 * 109.46937 * 245.14219 * 3 2 1 32 32 H 1.09003 * 109.46817 * 94.48665 * 8 7 5 33 33 H 1.09000 * 109.47294 * 214.48352 * 8 7 5 34 34 H 1.08997 * 109.46849 * 334.48514 * 8 7 5 35 35 H 1.08999 * 109.47177 * 210.00425 * 9 7 5 36 36 H 1.08996 * 109.47318 * 330.00847 * 9 7 5 37 37 H 1.08999 * 109.47066 * 299.99900 * 10 9 7 38 38 H 1.08996 * 109.46925 * 60.00013 * 10 9 7 39 39 H 0.96998 * 120.00028 * 0.02562 * 11 10 9 40 40 H 1.09000 * 109.47758 * 300.00249 * 14 12 11 41 41 H 1.09010 * 109.47329 * 60.00221 * 14 12 11 42 42 H 0.97000 * 120.00025 * 179.97438 * 19 18 16 43 43 H 1.08997 * 113.60981 * 203.66807 * 24 4 3 44 44 H 1.08998 * 113.61219 * 334.57577 * 24 4 3 45 45 H 1.09005 * 113.61137 * 270.88236 * 25 24 4 46 46 H 1.09000 * 113.61163 * 139.98464 * 25 24 4 47 47 H 1.09005 * 113.61431 * 220.01830 * 26 25 24 48 48 H 1.08999 * 113.61737 * 89.12015 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0374 1.3317 1.1796 5 6 2.3595 1.0915 2.5039 6 8 2.6325 0.1053 3.1549 7 7 1.4539 1.9755 2.9675 8 6 1.2029 3.2193 2.2351 9 6 0.7205 1.6927 4.2037 10 6 1.4977 2.2519 5.3971 11 7 0.7645 1.9685 6.6334 12 6 1.2630 2.3701 7.8195 13 8 2.3182 2.9664 7.8633 14 6 0.5091 2.0781 9.0913 15 16 1.4285 2.7398 10.5031 16 6 0.3520 2.2701 11.8166 17 1 -0.5613 1.7353 11.6012 18 6 0.6777 2.5873 13.1280 19 7 1.7905 3.2395 13.3903 20 14 -0.4640 2.0899 14.5204 21 1 -1.6396 1.3729 13.9644 22 1 0.2611 1.1972 15.4598 23 1 -0.9205 3.3038 15.2437 24 6 4.2922 0.4689 0.9645 25 6 4.9416 1.7110 0.3316 26 6 3.9727 2.5524 1.1789 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3587 2.1315 0.0922 31 1 2.6192 1.4039 -0.9324 32 1 0.3528 3.0821 1.5667 33 1 0.9837 4.0194 2.9421 34 1 2.0853 3.4817 1.6516 35 1 -0.2625 2.1615 4.1584 36 1 0.6041 0.6150 4.3187 37 1 2.4806 1.7831 5.4425 38 1 1.6140 3.3295 5.2821 39 1 -0.0792 1.4913 6.5984 40 1 -0.4741 2.5465 9.0467 41 1 0.3932 1.0002 9.2057 42 1 2.0180 3.4615 14.3068 43 1 4.7685 0.1521 1.8923 44 1 4.1429 -0.3513 0.2624 45 1 4.7693 1.7949 -0.7415 46 1 5.9885 1.8433 0.6048 47 1 3.5655 3.4141 0.6499 48 1 4.3617 2.8051 2.1652 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704184177.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:36 Heat of formation + Delta-G solvation = -31.034930 kcal Electronic energy + Delta-G solvation = -26987.134415 eV Core-core repulsion = 23169.746157 eV Total energy + Delta-G solvation = -3817.388258 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.34011 -39.20017 -38.27911 -36.23376 -34.79380 -34.32086 -32.41395 -30.72637 -29.08492 -28.20379 -26.98842 -26.14836 -25.49793 -25.01821 -22.98244 -20.71814 -20.41060 -20.10205 -18.80830 -17.83802 -17.36320 -16.78341 -16.33417 -15.99609 -15.88276 -15.39379 -15.21975 -14.83552 -14.79257 -14.58147 -14.36938 -13.93860 -13.78615 -13.44171 -13.14633 -13.08875 -12.85648 -12.71580 -12.53506 -12.38191 -12.36300 -12.10073 -12.02671 -11.51518 -11.49379 -11.34373 -11.05794 -11.00381 -10.96215 -10.74971 -10.65771 -9.91572 -9.79611 -9.66848 -9.42166 -9.06449 -9.00965 -8.87903 -8.21226 -6.48232 -6.20308 -3.90606 1.87244 2.35581 2.51539 3.12212 3.13373 3.22689 3.30211 3.36810 3.80381 3.88847 3.98233 4.18252 4.21708 4.33572 4.41916 4.64219 4.69981 4.71793 4.76645 4.83639 4.98540 5.05000 5.09833 5.14862 5.19225 5.22814 5.24031 5.25956 5.36403 5.40091 5.48078 5.53525 5.63113 5.64273 5.71944 5.72349 5.85810 5.91915 5.97959 6.15389 6.17322 6.22772 6.34505 6.61686 7.03756 7.61380 7.70851 7.91130 8.36993 8.63253 9.25074 10.87212 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025304 B = 0.001844 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.289916 B =15179.949393 C =15650.528092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.155 4.155 3 C -0.068 4.068 4 C -0.102 4.102 5 C 0.533 3.467 6 O -0.529 6.529 7 N -0.610 5.610 8 C 0.067 3.933 9 C 0.107 3.893 10 C 0.109 3.891 11 N -0.737 5.737 12 C 0.533 3.467 13 O -0.517 6.517 14 C -0.152 4.152 15 S -0.061 6.061 16 C -0.534 4.534 17 H 0.073 0.927 18 C 0.072 3.928 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.112 4.112 25 C -0.141 4.141 26 C -0.128 4.128 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.398 0.602 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.268 0.732 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.074 0.926 47 H 0.079 0.921 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.225 -2.301 -33.167 33.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.173 4.173 3 C -0.105 4.105 4 C -0.105 4.105 5 C 0.321 3.679 6 O -0.404 6.404 7 N -0.344 5.344 8 C -0.076 4.076 9 C -0.017 4.017 10 C -0.017 4.017 11 N -0.392 5.392 12 C 0.319 3.681 13 O -0.391 6.391 14 C -0.303 4.303 15 S 0.166 5.834 16 C -0.682 4.682 17 H 0.091 0.909 18 C -0.137 4.137 19 N -0.503 5.503 20 Si 0.746 3.254 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.150 4.150 25 C -0.178 4.178 26 C -0.166 4.166 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.128 0.872 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.232 0.768 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.077 0.923 43 H 0.111 0.889 44 H 0.092 0.908 45 H 0.102 0.898 46 H 0.092 0.908 47 H 0.097 0.903 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.191 -1.744 -32.613 32.660 hybrid contribution -2.494 -1.168 0.897 2.896 sum -2.686 -2.912 -31.716 31.963 Atomic orbital electron populations 1.23825 0.95835 1.01861 1.00890 1.22865 0.96028 0.98381 0.99994 1.20609 0.97114 0.96385 0.96423 1.22124 0.95182 1.00249 0.92921 1.20417 0.78394 0.82245 0.86849 1.90723 1.61942 1.28836 1.58908 1.47627 1.41197 1.20858 1.24708 1.22125 1.02318 0.85880 0.97269 1.21569 0.94620 1.02554 0.82928 1.21556 0.96482 1.00657 0.83009 1.45842 1.26139 1.61414 1.05813 1.20306 0.85637 0.78025 0.84160 1.90703 1.22326 1.39452 1.86600 1.23526 1.03748 1.05293 0.97744 1.85411 1.30213 1.74246 0.93580 1.22910 1.09377 1.43073 0.92884 0.90859 1.25004 0.95733 0.94735 0.98212 1.70031 1.22618 1.37249 1.20397 0.86106 0.80080 0.78337 0.80904 1.19617 1.20570 1.20582 1.22849 0.93661 0.96542 1.01938 1.22850 0.99319 0.96202 0.99457 1.23064 0.96233 0.95630 1.01637 0.88697 0.88443 0.87189 0.90395 0.89648 0.92485 0.90825 0.89829 0.89870 0.89303 0.91276 0.91684 0.76828 0.89181 0.89146 0.92250 0.88891 0.90807 0.89787 0.90764 0.90253 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.21 14.32 29.02 0.42 -0.79 16 2 C -0.15 -1.06 8.63 -36.02 -0.31 -1.37 16 3 C -0.07 -0.37 4.77 -27.88 -0.13 -0.50 16 4 C -0.10 -0.74 0.30 -154.85 -0.05 -0.78 16 5 C 0.53 5.65 5.94 -10.99 -0.07 5.58 16 6 O -0.53 -7.88 15.75 5.55 0.09 -7.79 16 7 N -0.61 -5.34 2.87 -181.57 -0.52 -5.86 16 8 C 0.07 0.36 9.00 59.85 0.54 0.90 16 9 C 0.11 1.01 5.51 -4.04 -0.02 0.99 16 10 C 0.11 1.39 6.00 -4.04 -0.02 1.37 16 11 N -0.74 -10.32 5.56 -60.29 -0.33 -10.65 16 12 C 0.53 10.34 7.85 -10.99 -0.09 10.26 16 13 O -0.52 -12.24 15.86 5.56 0.09 -12.15 16 14 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 15 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 16 C -0.53 -15.41 9.50 30.94 0.29 -15.11 16 17 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 18 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -26.45 13.22 55.49 0.73 -25.72 16 20 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 24 C -0.11 -0.85 6.81 -25.91 -0.18 -1.03 16 25 C -0.14 -0.76 7.73 -25.92 -0.20 -0.96 16 26 C -0.13 -0.75 5.54 -25.92 -0.14 -0.89 16 27 H 0.09 0.52 7.84 -52.48 -0.41 0.11 16 28 H 0.10 0.60 8.06 -52.49 -0.42 0.18 16 29 H 0.11 0.81 7.98 -52.48 -0.42 0.40 16 30 H 0.08 0.34 5.47 -51.93 -0.28 0.06 16 31 H 0.09 0.35 7.31 -51.93 -0.38 -0.03 16 32 H 0.06 0.23 7.41 -51.93 -0.38 -0.16 16 33 H 0.07 0.37 8.11 -51.93 -0.42 -0.05 16 34 H 0.08 0.36 4.00 -51.93 -0.21 0.16 16 35 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 36 H 0.09 0.95 7.49 -51.93 -0.39 0.56 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.40 4.24 8.47 -40.82 -0.35 3.89 16 40 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 41 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 42 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.09 0.90 7.69 -51.93 -0.40 0.51 16 44 H 0.07 0.51 7.96 -51.93 -0.41 0.09 16 45 H 0.08 0.33 7.61 -51.93 -0.40 -0.06 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.08 0.31 7.03 -51.93 -0.36 -0.06 16 48 H 0.09 0.65 8.09 -51.93 -0.42 0.23 16 LS Contribution 403.68 15.07 6.08 6.08 Total: -1.00 -37.49 403.68 -8.67 -46.16 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -7.74 Total: 0.50 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 0.17 Total: -3.29 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: -0.12 Total: -42.23 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: 0.18 Total: -19.94 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -37.49 -8.67 -46.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704184177.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.128 kcal (2) G-P(sol) polarization free energy of solvation -37.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds