Wall clock time and date at job start Tue Mar 31 2020 22:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50709 * 119.99769 * 2 1 4 4 C 1.52999 * 109.46736 * 125.13931 * 3 2 1 5 5 C 1.50697 * 112.85256 * 304.52210 * 4 3 2 6 6 O 1.21287 * 119.99767 * 115.92436 * 5 4 3 7 7 N 1.34772 * 120.00146 * 295.64177 * 5 4 3 8 8 C 1.46505 * 120.00137 * 355.35969 * 7 5 4 9 9 C 1.46502 * 120.00124 * 175.35299 * 7 5 4 10 10 C 1.53006 * 109.46904 * 90.00593 * 9 7 5 11 11 N 1.46502 * 109.46904 * 180.02562 * 10 9 7 12 12 C 1.34776 * 119.99381 * 179.97438 * 11 10 9 13 13 O 1.21280 * 120.00577 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99602 * 180.02562 * 12 11 10 15 15 S 1.81004 * 109.47332 * 180.02562 * 14 12 11 16 16 C 1.76197 * 100.00188 * 180.02562 * 15 14 12 17 17 H 1.08003 * 120.00050 * 359.97438 * 16 15 14 18 18 C 1.38799 * 120.00179 * 179.97438 * 16 15 14 19 19 N 1.31631 * 119.99652 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00085 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47228 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46623 * 120.00032 * 20 18 16 23 23 H 1.48496 * 109.47192 * 239.99955 * 20 18 16 24 24 C 1.53787 * 113.69122 * 75.79571 * 4 3 2 25 25 C 1.53785 * 87.07937 * 89.12340 * 24 4 3 26 26 C 1.53775 * 87.08219 * 25.43306 * 25 24 4 27 27 H 1.08003 * 120.00226 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.99758 * 180.02562 * 1 2 3 29 29 H 1.08003 * 120.00226 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.46814 * 5.14636 * 3 2 1 31 31 H 1.08995 * 109.46937 * 245.14219 * 3 2 1 32 32 H 1.09003 * 109.46817 * 94.48665 * 8 7 5 33 33 H 1.09000 * 109.47294 * 214.48352 * 8 7 5 34 34 H 1.08997 * 109.46849 * 334.48514 * 8 7 5 35 35 H 1.08999 * 109.47177 * 210.00425 * 9 7 5 36 36 H 1.08996 * 109.47318 * 330.00847 * 9 7 5 37 37 H 1.08999 * 109.47066 * 299.99900 * 10 9 7 38 38 H 1.08996 * 109.46925 * 60.00013 * 10 9 7 39 39 H 0.96998 * 120.00028 * 0.02562 * 11 10 9 40 40 H 1.09000 * 109.47758 * 300.00249 * 14 12 11 41 41 H 1.09010 * 109.47329 * 60.00221 * 14 12 11 42 42 H 0.97000 * 120.00025 * 179.97438 * 19 18 16 43 43 H 1.08997 * 113.60981 * 203.66807 * 24 4 3 44 44 H 1.08998 * 113.61219 * 334.57577 * 24 4 3 45 45 H 1.09005 * 113.61137 * 270.88236 * 25 24 4 46 46 H 1.09000 * 113.61163 * 139.98464 * 25 24 4 47 47 H 1.09005 * 113.61431 * 220.01830 * 26 25 24 48 48 H 1.08999 * 113.61737 * 89.12015 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0374 1.3317 1.1796 5 6 2.3595 1.0915 2.5039 6 8 2.6325 0.1053 3.1549 7 7 1.4539 1.9755 2.9675 8 6 1.2029 3.2193 2.2351 9 6 0.7205 1.6927 4.2037 10 6 1.4977 2.2519 5.3971 11 7 0.7645 1.9685 6.6334 12 6 1.2630 2.3701 7.8195 13 8 2.3182 2.9664 7.8633 14 6 0.5091 2.0781 9.0913 15 16 1.4285 2.7398 10.5031 16 6 0.3520 2.2701 11.8166 17 1 -0.5613 1.7353 11.6012 18 6 0.6777 2.5873 13.1280 19 7 1.7905 3.2395 13.3903 20 14 -0.4640 2.0899 14.5204 21 1 -1.6396 1.3729 13.9644 22 1 0.2611 1.1972 15.4598 23 1 -0.9205 3.3038 15.2437 24 6 4.2922 0.4689 0.9645 25 6 4.9416 1.7110 0.3316 26 6 3.9727 2.5524 1.1789 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3587 2.1315 0.0922 31 1 2.6192 1.4039 -0.9324 32 1 0.3528 3.0821 1.5667 33 1 0.9837 4.0194 2.9421 34 1 2.0853 3.4817 1.6516 35 1 -0.2625 2.1615 4.1584 36 1 0.6041 0.6150 4.3187 37 1 2.4806 1.7831 5.4425 38 1 1.6140 3.3295 5.2821 39 1 -0.0792 1.4913 6.5984 40 1 -0.4741 2.5465 9.0467 41 1 0.3932 1.0002 9.2057 42 1 2.0180 3.4615 14.3068 43 1 4.7685 0.1521 1.8923 44 1 4.1429 -0.3513 0.2624 45 1 4.7693 1.7949 -0.7415 46 1 5.9885 1.8433 0.6048 47 1 3.5655 3.4141 0.6499 48 1 4.3617 2.8051 2.1652 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704184177.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:35 Heat of formation + Delta-G solvation = -56.923931 kcal Electronic energy + Delta-G solvation = -26988.257046 eV Core-core repulsion = 23169.746157 eV Total energy + Delta-G solvation = -3818.510889 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.99970 -40.66419 -39.03847 -37.17384 -35.66071 -35.15688 -34.59565 -31.99352 -30.11791 -28.94839 -27.75869 -27.56299 -26.69292 -25.70690 -23.85945 -21.98139 -21.07388 -20.83036 -19.87210 -19.40935 -18.02731 -17.92683 -17.60171 -17.11744 -16.89257 -16.77771 -16.43356 -16.10987 -15.86516 -15.36749 -15.28120 -14.98615 -14.85395 -14.72521 -14.37917 -14.04345 -13.74533 -13.61671 -13.39826 -13.21895 -13.19606 -13.17245 -12.92501 -12.83470 -12.67654 -12.59883 -12.38849 -12.07121 -11.94776 -11.72937 -11.48855 -11.16933 -11.15364 -11.09203 -10.59601 -10.29245 -10.22920 -10.18391 -9.76713 -8.68829 -8.35859 -6.14364 1.23167 1.38718 1.41019 1.43548 1.54839 1.55621 1.59695 1.83632 2.25934 2.44054 2.98334 3.30670 3.33998 3.43835 3.65110 3.77621 3.84519 3.87541 3.98153 4.00272 4.18258 4.27747 4.30611 4.31976 4.34414 4.48463 4.54299 4.66351 4.66674 4.71641 4.75990 4.84533 4.85211 4.92014 4.97992 5.01130 5.10237 5.14778 5.19795 5.26491 5.41249 5.44491 5.52686 5.74813 5.87224 6.19178 6.33781 6.43031 7.05369 7.13650 7.18397 8.73751 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025304 B = 0.001844 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.289916 B =15179.949393 C =15650.528092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.169 4.169 3 C -0.061 4.061 4 C -0.097 4.097 5 C 0.525 3.475 6 O -0.585 6.585 7 N -0.608 5.608 8 C 0.058 3.942 9 C 0.115 3.885 10 C 0.115 3.885 11 N -0.709 5.709 12 C 0.533 3.467 13 O -0.567 6.567 14 C -0.128 4.128 15 S -0.155 6.155 16 C -0.544 4.544 17 H 0.084 0.916 18 C 0.011 3.989 19 N -0.912 5.912 20 Si 1.001 2.999 21 H -0.256 1.256 22 H -0.275 1.275 23 H -0.273 1.273 24 C -0.125 4.125 25 C -0.129 4.129 26 C -0.124 4.124 27 H 0.111 0.889 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.121 0.879 36 H 0.076 0.924 37 H 0.032 0.968 38 H 0.067 0.933 39 H 0.419 0.581 40 H 0.116 0.884 41 H 0.109 0.891 42 H 0.271 0.729 43 H 0.059 0.941 44 H 0.077 0.923 45 H 0.109 0.891 46 H 0.071 0.929 47 H 0.110 0.890 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.019 -1.710 -35.294 35.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.187 4.187 3 C -0.098 4.098 4 C -0.101 4.101 5 C 0.314 3.686 6 O -0.464 6.464 7 N -0.340 5.340 8 C -0.084 4.084 9 C -0.009 4.009 10 C -0.011 4.011 11 N -0.364 5.364 12 C 0.319 3.681 13 O -0.445 6.445 14 C -0.279 4.279 15 S 0.073 5.927 16 C -0.692 4.692 17 H 0.102 0.898 18 C -0.194 4.194 19 N -0.548 5.548 20 Si 0.823 3.177 21 H -0.179 1.179 22 H -0.200 1.200 23 H -0.198 1.198 24 C -0.163 4.163 25 C -0.166 4.166 26 C -0.161 4.161 27 H 0.129 0.871 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.124 0.876 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.139 0.861 36 H 0.094 0.906 37 H 0.051 0.949 38 H 0.085 0.915 39 H 0.256 0.744 40 H 0.134 0.866 41 H 0.127 0.873 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.128 0.872 46 H 0.090 0.910 47 H 0.128 0.872 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.040 -1.147 -34.804 34.956 hybrid contribution -1.622 -1.396 1.446 2.583 sum -4.662 -2.543 -33.359 33.779 Atomic orbital electron populations 1.23964 0.95753 1.02519 1.00264 1.22952 0.96405 0.98715 1.00627 1.20648 0.96978 0.96073 0.96102 1.22199 0.95163 1.00767 0.91922 1.21112 0.78162 0.81625 0.87682 1.90693 1.63780 1.31301 1.60654 1.47767 1.40311 1.21659 1.24251 1.22430 1.03936 0.84270 0.97719 1.21502 0.95598 1.01939 0.81889 1.21586 0.95356 1.00594 0.83550 1.45542 1.26491 1.59737 1.04656 1.20141 0.84909 0.77832 0.85190 1.90692 1.24452 1.42081 1.87319 1.23359 1.03545 1.05995 0.94973 1.85617 1.33490 1.75792 0.97845 1.23235 1.09528 1.43178 0.93276 0.89777 1.26170 0.97466 0.94409 1.01320 1.70196 1.24823 1.38593 1.21227 0.84872 0.77904 0.78191 0.76758 1.17946 1.20039 1.19798 1.22856 0.94679 0.97915 1.00853 1.22855 0.99001 0.94108 1.00631 1.23053 0.95798 0.96183 1.01110 0.87095 0.88808 0.88742 0.88486 0.87602 0.89964 0.90103 0.88676 0.86123 0.90585 0.94916 0.91469 0.74370 0.86585 0.87292 0.91988 0.92214 0.90472 0.87240 0.90980 0.87169 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.08 14.32 67.78 0.97 -1.11 16 2 C -0.17 -2.09 8.63 25.65 0.22 -1.87 16 3 C -0.06 -0.50 4.77 29.85 0.14 -0.35 16 4 C -0.10 -1.31 0.30 -52.40 -0.02 -1.33 16 5 C 0.52 11.10 5.94 87.66 0.52 11.62 16 6 O -0.58 -18.50 15.75 -3.05 -0.05 -18.54 16 7 N -0.61 -9.69 2.87 -846.74 -2.43 -12.12 16 8 C 0.06 0.43 9.00 127.77 1.15 1.58 16 9 C 0.11 1.98 5.51 86.38 0.48 2.45 16 10 C 0.11 2.89 6.00 86.38 0.52 3.41 16 11 N -0.71 -19.00 5.56 -463.05 -2.57 -21.57 16 12 C 0.53 20.63 7.85 87.66 0.69 21.32 16 13 O -0.57 -27.70 15.86 -3.03 -0.05 -27.75 16 14 C -0.13 -5.16 6.16 71.24 0.44 -4.73 16 15 S -0.15 -8.77 20.57 -56.49 -1.16 -9.93 16 16 C -0.54 -31.46 9.50 67.95 0.65 -30.81 16 17 H 0.08 4.50 7.80 -2.91 -0.02 4.48 16 18 C 0.01 0.63 5.49 84.86 0.47 1.10 16 19 N -0.91 -56.73 13.22 21.65 0.29 -56.44 16 20 Si 1.00 44.06 29.55 68.60 2.03 46.09 16 21 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 C -0.13 -1.95 6.81 31.12 0.21 -1.74 16 25 C -0.13 -1.20 7.73 31.12 0.24 -0.95 16 26 C -0.12 -1.23 5.54 31.12 0.17 -1.06 16 27 H 0.11 0.84 7.84 -2.91 -0.02 0.82 16 28 H 0.09 1.06 8.06 -2.91 -0.02 1.04 16 29 H 0.09 1.43 7.98 -2.91 -0.02 1.40 16 30 H 0.10 0.43 5.47 -2.39 -0.01 0.41 16 31 H 0.11 0.47 7.31 -2.39 -0.02 0.45 16 32 H 0.08 0.26 7.41 -2.39 -0.02 0.24 16 33 H 0.08 0.54 8.11 -2.39 -0.02 0.52 16 34 H 0.09 0.49 4.00 -2.39 -0.01 0.48 16 35 H 0.12 1.22 8.07 -2.39 -0.02 1.20 16 36 H 0.08 1.56 7.49 -2.39 -0.02 1.54 16 37 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.42 7.84 8.47 -92.71 -0.79 7.05 16 40 H 0.12 4.10 8.14 -2.40 -0.02 4.08 16 41 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 42 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 43 H 0.06 1.32 7.69 -2.39 -0.02 1.30 16 44 H 0.08 1.09 7.96 -2.39 -0.02 1.08 16 45 H 0.11 0.50 7.61 -2.38 -0.02 0.48 16 46 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.11 0.43 7.03 -2.38 -0.02 0.41 16 48 H 0.07 0.99 8.09 -2.39 -0.02 0.97 16 Total: -1.00 -87.33 403.68 3.06 -84.27 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.17 Total: 18.48 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 6.85 Total: -2.48 kcal Atomic # 7 Polarization: -85.41 SS G_CDS: -4.72 Total: -90.13 kcal Atomic # 8 Polarization: -46.20 SS G_CDS: -0.10 Total: -46.29 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.16 Total: -9.93 kcal Total: -87.33 3.06 -84.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704184177.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.345 kcal (2) G-P(sol) polarization free energy of solvation -87.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds