Wall clock time and date at job start Tue Mar 31 2020 22:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36947 * 119.99805 * 2 1 4 4 H 1.08000 * 120.00098 * 200.17249 * 3 2 1 5 5 C 1.38809 * 119.99934 * 20.17712 * 3 2 1 6 6 N 1.31620 * 120.00041 * 15.07221 * 5 3 2 7 7 Si 1.86795 * 119.99939 * 195.07943 * 5 3 2 8 8 H 1.48505 * 109.47446 * 84.99857 * 7 5 3 9 9 H 1.48502 * 109.47360 * 204.99668 * 7 5 3 10 10 H 1.48498 * 109.47162 * 325.00121 * 7 5 3 11 11 C 1.46500 * 120.00350 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.46954 * 269.99950 * 11 2 1 13 13 H 1.09001 * 109.52482 * 55.08380 * 12 11 2 14 14 C 1.53042 * 109.49531 * 175.15886 * 12 11 2 15 15 C 1.53046 * 109.53832 * 181.31784 * 14 12 11 16 16 C 1.53623 * 109.23999 * 298.51155 * 15 14 12 17 17 N 1.46931 * 108.54584 * 54.85586 * 16 15 14 18 18 C 1.34770 * 120.63044 * 126.36539 * 17 16 15 19 19 O 1.21283 * 120.00111 * 179.72372 * 18 17 16 20 20 C 1.50702 * 120.00368 * 359.72335 * 18 17 16 21 21 C 1.52997 * 109.47273 * 180.02562 * 20 18 17 22 22 F 1.39898 * 109.47337 * 59.99956 * 21 20 18 23 23 F 1.39896 * 109.46885 * 299.99816 * 21 20 18 24 24 C 1.53002 * 109.46733 * 179.97438 * 21 20 18 25 25 F 1.39902 * 109.46764 * 179.97438 * 24 21 20 26 26 F 1.39897 * 109.47502 * 60.00217 * 24 21 20 27 27 C 1.46925 * 118.73744 * 306.09579 * 17 16 15 28 28 H 1.09000 * 109.47168 * 275.10029 * 1 2 3 29 29 H 1.09002 * 109.46936 * 35.10266 * 1 2 3 30 30 H 1.09000 * 109.46836 * 155.10047 * 1 2 3 31 31 H 0.97001 * 119.99949 * 179.97438 * 6 5 3 32 32 H 1.08996 * 109.47279 * 149.99756 * 11 2 1 33 33 H 1.09001 * 109.46629 * 29.99940 * 11 2 1 34 34 H 1.08995 * 109.46351 * 301.33855 * 14 12 11 35 35 H 1.09000 * 109.45971 * 61.29685 * 14 12 11 36 36 H 1.08998 * 109.49660 * 58.58793 * 15 14 12 37 37 H 1.09001 * 109.49965 * 178.68602 * 15 14 12 38 38 H 1.09000 * 109.73998 * 295.11749 * 16 15 14 39 39 H 1.09004 * 109.66481 * 174.54900 * 16 15 14 40 40 H 1.09003 * 109.46771 * 59.99688 * 20 18 17 41 41 H 1.09008 * 109.46914 * 299.99899 * 20 18 17 42 42 H 1.08994 * 109.47766 * 299.99656 * 24 21 20 43 43 H 1.08999 * 109.58801 * 173.64383 * 27 17 16 44 44 H 1.09001 * 109.58896 * 293.92852 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1800 1.2148 -0.3225 5 6 1.5195 2.3512 0.4146 6 7 0.3853 2.2853 1.0793 7 14 2.2809 4.0128 0.0292 8 1 1.8686 4.4428 -1.3311 9 1 1.8187 5.0123 1.0256 10 1 3.7608 3.9044 0.0866 11 6 2.1976 -1.2687 -0.0006 12 6 2.4526 -1.7109 1.4417 13 1 1.5066 -1.7575 1.9812 14 6 3.1100 -3.0930 1.4435 15 6 3.3356 -3.5506 2.8864 16 6 4.2818 -2.5645 3.5882 17 7 3.7219 -1.2116 3.4651 18 6 3.5277 -0.4469 4.5577 19 8 3.0695 0.6701 4.4424 20 6 3.8797 -0.9796 5.9227 21 6 3.5636 0.0794 6.9806 22 9 2.1998 0.3885 6.9382 23 9 4.3115 1.2333 6.7233 24 6 3.9205 -0.4618 8.3665 25 9 3.6319 0.5068 9.3339 26 9 5.2841 -0.7712 8.4094 27 6 3.3835 -0.7061 2.1277 28 1 -0.3633 0.0914 1.0236 29 1 -0.3633 0.8408 -0.5910 30 1 -0.3633 -0.9322 -0.4327 31 1 -0.0549 3.0995 1.3693 32 1 3.1500 -1.1381 -0.5144 33 1 1.6085 -2.0281 -0.5147 34 1 2.4605 -3.8048 0.9342 35 1 4.0675 -3.0403 0.9253 36 1 2.3813 -3.5797 3.4122 37 1 3.7825 -4.5448 2.8872 38 1 5.2640 -2.5978 3.1166 39 1 4.3710 -2.8286 4.6420 40 1 4.9422 -1.2209 5.9556 41 1 3.2966 -1.8785 6.1234 42 1 3.3375 -1.3607 8.5668 43 1 2.8798 0.2563 2.2175 44 1 4.2941 -0.5886 1.5402 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713133995.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:44 Heat of formation + Delta-G solvation = -235.004023 kcal Electronic energy + Delta-G solvation = -31953.722191 eV Core-core repulsion = 27019.419253 eV Total energy + Delta-G solvation = -4934.302938 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.88227 -49.65000 -48.53333 -48.08993 -41.19691 -38.90390 -37.20014 -34.68999 -33.71619 -33.01948 -31.73567 -29.10400 -27.96252 -27.20522 -26.08199 -24.06091 -23.46615 -22.32920 -21.23412 -20.20263 -19.56467 -19.37950 -18.70356 -18.61623 -17.83424 -17.76872 -17.34493 -16.84132 -16.48206 -16.42928 -15.78348 -15.56811 -15.43541 -15.15564 -15.11571 -15.01245 -14.90798 -14.68407 -14.64106 -14.61424 -14.15040 -13.95767 -13.89435 -13.77176 -13.29853 -13.24396 -13.14609 -12.98667 -12.84159 -12.53289 -12.29909 -12.07175 -12.02259 -11.87171 -11.82254 -11.62644 -11.52407 -11.20918 -10.89005 -10.57780 -9.57878 -8.76545 -7.82485 -5.24269 1.38695 1.41138 1.47898 1.51252 1.55969 2.02340 2.49998 2.50514 2.76097 2.87276 2.97787 3.32986 3.54682 3.69784 3.70075 3.75502 3.96832 4.03905 4.16078 4.18810 4.23477 4.28097 4.45904 4.60684 4.71311 4.80131 4.85785 4.89924 4.96447 5.06672 5.12457 5.24079 5.29168 5.35565 5.53883 5.57603 5.64055 5.66587 5.74143 6.32744 6.44425 7.16435 7.17132 7.91477 8.32840 9.21529 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.011557 B = 0.004075 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.133008 B = 6870.017362 C = 8487.025484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.618 5.618 3 C -0.243 4.243 4 H 0.070 0.930 5 C -0.052 4.052 6 N -0.934 5.934 7 Si 0.951 3.049 8 H -0.278 1.278 9 H -0.306 1.306 10 H -0.272 1.272 11 C 0.152 3.848 12 C -0.105 4.105 13 H 0.033 0.967 14 C -0.109 4.109 15 C -0.127 4.127 16 C 0.094 3.906 17 N -0.607 5.607 18 C 0.493 3.507 19 O -0.582 6.582 20 C -0.177 4.177 21 C 0.245 3.755 22 F -0.190 7.190 23 F -0.202 7.202 24 C 0.248 3.752 25 F -0.201 7.201 26 F -0.180 7.180 27 C 0.132 3.868 28 H -0.007 1.007 29 H 0.014 0.986 30 H 0.033 0.967 31 H 0.241 0.759 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.112 0.888 38 H 0.087 0.913 39 H 0.120 0.880 40 H 0.168 0.832 41 H 0.180 0.820 42 H 0.208 0.792 43 H 0.054 0.946 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.553 -20.259 12.740 26.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.340 5.340 3 C -0.373 4.373 4 H 0.088 0.912 5 C -0.247 4.247 6 N -0.582 5.582 7 Si 0.781 3.219 8 H -0.204 1.204 9 H -0.234 1.234 10 H -0.197 1.197 11 C 0.026 3.974 12 C -0.127 4.127 13 H 0.052 0.948 14 C -0.147 4.147 15 C -0.165 4.165 16 C -0.027 4.027 17 N -0.339 5.339 18 C 0.281 3.719 19 O -0.461 6.461 20 C -0.216 4.216 21 C 0.207 3.793 22 F -0.171 7.171 23 F -0.183 7.183 24 C 0.194 3.806 25 F -0.182 7.182 26 F -0.162 7.162 27 C 0.009 3.991 28 H 0.011 0.989 29 H 0.033 0.967 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.130 0.870 38 H 0.105 0.895 39 H 0.138 0.862 40 H 0.185 0.815 41 H 0.197 0.803 42 H 0.224 0.776 43 H 0.073 0.927 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.241 -19.502 12.719 25.436 hybrid contribution -0.219 2.295 -0.216 2.315 sum 10.023 -17.207 12.503 23.513 Atomic orbital electron populations 1.20471 0.83122 0.95878 0.97017 1.44220 1.01979 1.01947 1.85904 1.19307 0.96593 0.85908 1.35499 0.91246 1.25575 0.98586 1.01220 0.99315 1.70241 1.20285 1.26434 1.41198 0.85511 0.78344 0.81040 0.77039 1.20437 1.23369 1.19747 1.21091 0.95910 0.86594 0.93793 1.21979 0.96926 0.95585 0.98254 0.94846 1.21558 1.01123 0.94085 0.97980 1.21987 0.99858 0.99649 0.95038 1.22350 0.97449 0.78876 1.03996 1.48314 1.62564 1.17118 1.05904 1.20893 0.78271 0.85285 0.87461 1.90893 1.46022 1.22181 1.87013 1.22979 1.10108 0.99733 0.88808 1.22481 0.74540 0.84350 0.97933 1.93093 1.32677 1.94074 1.97293 1.93065 1.76214 1.53572 1.95478 1.23234 0.81190 0.93126 0.83055 1.93044 1.93234 1.67048 1.64871 1.93058 1.33667 1.93083 1.96346 1.21376 0.97743 0.98416 0.81575 0.98888 0.96705 0.94851 0.94961 0.92993 0.91812 0.90643 0.90764 0.92358 0.86979 0.89451 0.86178 0.81483 0.80307 0.77610 0.92724 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.32 9.02 127.77 1.15 10.47 16 2 N -0.62 -31.42 2.82 -726.93 -2.05 -33.47 16 3 C -0.24 -13.75 7.78 84.03 0.65 -13.10 16 4 H 0.07 3.82 7.86 -2.91 -0.02 3.80 16 5 C -0.05 -3.13 5.06 84.86 0.43 -2.70 16 6 N -0.93 -60.24 10.66 21.65 0.23 -60.00 16 7 Si 0.95 49.46 29.58 68.60 2.03 51.49 16 8 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 9 H -0.31 -16.57 7.11 99.48 0.71 -15.86 16 10 H -0.27 -13.61 7.11 99.48 0.71 -12.90 16 11 C 0.15 5.85 5.22 86.38 0.45 6.30 16 12 C -0.11 -3.61 2.55 -10.72 -0.03 -3.64 16 13 H 0.03 1.35 8.14 -2.39 -0.02 1.34 16 14 C -0.11 -2.31 5.16 30.62 0.16 -2.15 16 15 C -0.13 -1.87 6.10 30.82 0.19 -1.68 16 16 C 0.09 1.43 6.37 86.51 0.55 1.98 16 17 N -0.61 -18.02 2.97 -818.06 -2.43 -20.45 16 18 C 0.49 16.65 7.47 87.66 0.65 17.30 16 19 O -0.58 -28.90 14.25 -3.04 -0.04 -28.95 16 20 C -0.18 -3.21 3.52 29.85 0.11 -3.10 16 21 C 0.24 6.06 1.40 30.59 0.04 6.10 16 22 F -0.19 -6.20 16.12 44.97 0.73 -5.48 16 23 F -0.20 -7.03 16.10 44.97 0.72 -6.30 16 24 C 0.25 3.62 4.83 71.98 0.35 3.97 16 25 F -0.20 -4.36 17.30 44.97 0.78 -3.58 16 26 F -0.18 -2.64 16.80 44.97 0.76 -1.88 16 27 C 0.13 5.16 5.08 86.36 0.44 5.60 16 28 H -0.01 -0.42 7.40 -2.39 -0.02 -0.44 16 29 H 0.01 0.81 7.20 -2.39 -0.02 0.79 16 30 H 0.03 1.43 7.83 -2.39 -0.02 1.41 16 31 H 0.24 15.44 8.31 -92.71 -0.77 14.67 16 32 H 0.05 1.91 8.03 -2.39 -0.02 1.89 16 33 H 0.06 2.14 7.86 -2.39 -0.02 2.12 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.12 0.78 5.93 -2.39 -0.01 0.77 16 40 H 0.17 1.74 7.59 -2.39 -0.02 1.73 16 41 H 0.18 1.31 7.70 -2.38 -0.02 1.29 16 42 H 0.21 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.05 2.97 5.61 -2.39 -0.01 2.96 16 44 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -91.47 363.94 6.89 -84.58 By element: Atomic # 1 Polarization: -2.34 SS G_CDS: 1.02 Total: -1.32 kcal Atomic # 6 Polarization: 20.21 SS G_CDS: 5.14 Total: 25.35 kcal Atomic # 7 Polarization: -109.68 SS G_CDS: -4.24 Total: -113.92 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -0.04 Total: -28.95 kcal Atomic # 9 Polarization: -20.22 SS G_CDS: 2.98 Total: -17.24 kcal Atomic # 14 Polarization: 49.46 SS G_CDS: 2.03 Total: 51.49 kcal Total: -91.47 6.89 -84.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713133995.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.422 kcal (2) G-P(sol) polarization free energy of solvation -91.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds