Wall clock time and date at job start Tue Mar 31 2020 23:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48498 * 109.47268 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47204 * 300.00472 * 3 2 1 6 6 H 1.48508 * 109.46889 * 60.00276 * 3 2 1 7 7 C 1.38811 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00295 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.47290 * 125.79079 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.30599 * 178.92205 * 10 9 7 12 12 C 1.55154 * 102.94303 * 337.81911 * 11 10 9 13 13 H 1.09008 * 111.00345 * 277.42446 * 12 11 10 14 14 C 1.52999 * 111.03901 * 153.59308 * 12 11 10 15 15 C 1.53001 * 109.47357 * 181.33347 * 14 12 11 16 16 N 1.46494 * 109.47153 * 179.97438 * 15 14 12 17 17 C 1.34782 * 119.99883 * 179.97438 * 16 15 14 18 18 O 1.21547 * 119.99962 * 359.97438 * 17 16 15 19 19 C 1.47894 * 120.00007 * 180.02562 * 17 16 15 20 20 N 1.32143 * 120.03225 * 359.71879 * 19 17 16 21 21 C 1.31980 * 122.76732 * 179.70135 * 20 19 17 22 22 C 1.37778 * 121.72591 * 0.58318 * 21 20 19 23 23 C 1.40383 * 118.72989 * 359.72567 * 22 21 20 24 24 C 1.40644 * 122.27900 * 179.97438 * 23 22 21 25 25 C 1.36648 * 117.95201 * 180.02562 * 24 23 22 26 26 C 1.39400 * 119.92264 * 0.02562 * 25 24 23 27 27 N 1.31208 * 121.85643 * 359.97438 * 26 25 24 28 28 C 1.33259 * 121.22069 * 359.97438 * 27 26 25 29 29 C 1.47425 * 125.65179 * 180.02562 * 9 7 2 30 30 H 0.96999 * 120.00175 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.85762 * 59.49821 * 10 9 7 32 32 H 1.08995 * 110.00297 * 298.42768 * 10 9 7 33 33 H 1.09002 * 110.72180 * 219.45147 * 11 10 9 34 34 H 1.08994 * 110.87038 * 96.25177 * 11 10 9 35 35 H 1.09005 * 109.46636 * 301.32761 * 14 12 11 36 36 H 1.08992 * 109.47502 * 61.32488 * 14 12 11 37 37 H 1.09003 * 109.46648 * 299.99860 * 15 14 12 38 38 H 1.09000 * 109.47215 * 59.98952 * 15 14 12 39 39 H 0.97001 * 120.00138 * 359.97438 * 16 15 14 40 40 H 1.07993 * 119.13725 * 180.31085 * 21 20 19 41 41 H 1.07996 * 120.63540 * 179.73850 * 22 21 20 42 42 H 1.08000 * 121.02708 * 0.04519 * 24 23 22 43 43 H 1.07995 * 120.03842 * 180.02562 * 25 24 23 44 44 H 1.07999 * 119.06740 * 179.97438 * 26 25 24 45 45 H 1.09002 * 110.36696 * 85.26297 * 29 9 7 46 46 H 1.08995 * 110.36608 * 323.05133 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1397 -2.5367 -0.0005 11 6 -0.4478 -4.0487 -0.0283 12 6 0.8538 -4.6579 -0.6131 13 1 0.8588 -4.5974 -1.7015 14 6 1.0421 -6.1027 -0.1463 15 6 2.3499 -6.6563 -0.7156 16 7 2.5305 -8.0395 -0.2681 17 6 3.6207 -8.7342 -0.6493 18 8 4.4537 -8.2133 -1.3649 19 6 3.8027 -10.1308 -0.1980 20 7 2.8996 -10.6963 0.5836 21 6 3.0048 -11.9398 1.0131 22 6 4.0810 -12.7329 0.6797 23 6 5.0843 -12.1977 -0.1436 24 6 6.2147 -12.9403 -0.5295 25 6 7.1373 -12.3314 -1.3329 26 6 6.9406 -11.0137 -1.7428 27 7 5.8840 -10.3258 -1.3796 28 6 4.9465 -10.8609 -0.5981 29 6 1.9335 -3.7312 -0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5607 -2.0564 -0.8839 32 1 -0.5599 -2.0893 0.9002 33 1 -1.2974 -4.2573 -0.6785 34 1 -0.6320 -4.4259 0.9776 35 1 1.0793 -6.1306 0.9428 36 1 0.2074 -6.7095 -0.4969 37 1 2.3127 -6.6282 -1.8046 38 1 3.1846 -6.0493 -0.3649 39 1 1.8654 -8.4553 0.3027 40 1 2.2292 -12.3449 1.6460 41 1 4.1513 -13.7469 1.0445 42 1 6.3493 -13.9604 -0.2013 43 1 8.0177 -12.8705 -1.6498 44 1 7.6788 -10.5458 -2.3773 45 1 2.1668 -4.0420 1.0178 46 1 2.8339 -3.7400 -0.6148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714862984.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:24 Heat of formation + Delta-G solvation = 33.755532 kcal Electronic energy + Delta-G solvation = -27853.680098 eV Core-core repulsion = 23935.950165 eV Total energy + Delta-G solvation = -3917.729933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.33895 -40.47777 -39.38031 -38.95349 -36.45172 -34.81319 -34.67212 -32.71172 -32.38973 -31.52539 -30.62856 -28.26469 -26.87113 -26.14179 -25.10807 -24.57242 -23.37826 -21.93986 -21.73535 -20.91941 -19.76117 -18.87001 -18.75520 -18.53686 -17.31130 -16.98869 -16.83052 -16.64758 -16.37640 -15.70888 -15.70363 -15.52160 -15.34392 -15.13899 -14.85035 -14.23702 -14.08852 -14.01428 -13.86659 -13.74171 -13.62378 -13.31411 -13.13431 -13.07489 -12.81952 -12.67128 -12.23990 -11.98152 -11.82966 -11.79107 -11.62667 -11.39986 -11.32978 -11.28264 -10.98231 -10.72173 -10.37891 -10.20361 -10.11407 -9.46733 -8.88969 -7.85895 -5.20930 -1.12232 -0.33972 0.63724 1.43396 1.44959 1.55621 1.63773 2.00300 2.16431 2.48668 3.03800 3.05344 3.20786 3.31783 3.42564 3.64990 3.66791 3.73087 3.79387 3.93719 3.98409 4.14867 4.22444 4.26965 4.36161 4.37789 4.47846 4.58431 4.61882 4.64910 4.69874 4.75812 4.90498 4.95316 4.99647 5.10739 5.12345 5.16655 5.25277 5.34217 5.42957 5.44314 5.52276 5.61541 5.70708 5.79171 6.20429 6.41079 6.65200 6.93482 7.10486 7.20690 7.78057 8.43335 9.24957 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021334 B = 0.001906 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.136102 B =14683.895382 C =15678.577615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.070 4.070 3 Si 0.980 3.020 4 H -0.268 1.268 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.242 4.242 8 H 0.078 0.922 9 N -0.631 5.631 10 C 0.181 3.819 11 C -0.122 4.122 12 C -0.084 4.084 13 H 0.073 0.927 14 C -0.098 4.098 15 C 0.124 3.876 16 N -0.701 5.701 17 C 0.555 3.445 18 O -0.540 6.540 19 C 0.096 3.904 20 N -0.447 5.447 21 C 0.056 3.944 22 C -0.089 4.089 23 C -0.106 4.106 24 C -0.050 4.050 25 C -0.154 4.154 26 C 0.127 3.873 27 N -0.488 5.488 28 C 0.082 3.918 29 C 0.133 3.867 30 H 0.247 0.753 31 H 0.008 0.992 32 H 0.005 0.995 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.418 0.582 40 H 0.204 0.796 41 H 0.196 0.804 42 H 0.192 0.808 43 H 0.184 0.816 44 H 0.180 0.820 45 H 0.023 0.977 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.278 -37.596 1.469 38.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.263 4.263 3 Si 0.808 3.192 4 H -0.192 1.192 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.371 4.371 8 H 0.096 0.904 9 N -0.358 5.358 10 C 0.056 3.944 11 C -0.160 4.160 12 C -0.104 4.104 13 H 0.092 0.908 14 C -0.136 4.136 15 C 0.001 3.999 16 N -0.354 5.354 17 C 0.340 3.660 18 O -0.416 6.416 19 C -0.055 4.055 20 N -0.160 5.160 21 C -0.092 4.092 22 C -0.109 4.109 23 C -0.113 4.113 24 C -0.076 4.076 25 C -0.175 4.175 26 C -0.046 4.046 27 N -0.197 5.197 28 C -0.042 4.042 29 C 0.008 3.992 30 H 0.056 0.944 31 H 0.027 0.973 32 H 0.023 0.977 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.115 0.885 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.256 0.744 40 H 0.220 0.780 41 H 0.213 0.787 42 H 0.209 0.791 43 H 0.202 0.798 44 H 0.197 0.803 45 H 0.041 0.959 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 8.854 -35.658 1.029 36.755 hybrid contribution 0.827 0.389 0.125 0.922 sum 9.681 -35.269 1.154 36.592 Atomic orbital electron populations 1.70204 1.06232 1.25164 1.58483 1.25686 0.96735 1.01078 1.02784 0.84986 0.78054 0.79321 0.76843 1.19217 1.21716 1.21651 1.19501 0.90901 0.84012 1.42731 0.90415 1.44913 1.02723 1.01186 1.86958 1.20987 0.83489 0.92477 0.97459 1.22760 0.97312 0.94518 1.01402 1.22141 0.95018 0.93497 0.99775 0.90826 1.21577 0.96308 0.94037 1.01648 1.21343 0.98482 0.80807 0.99301 1.45786 1.23569 1.13967 1.52105 1.18064 0.82071 0.85154 0.80722 1.90836 1.43581 1.69886 1.37283 1.21158 0.91950 0.94508 0.97865 1.67263 1.27023 1.14455 1.07216 1.23294 0.99130 0.87901 0.98844 1.22978 0.91505 1.02865 0.93534 1.19376 0.98693 0.93645 0.99603 1.22001 0.90202 1.01377 0.93972 1.22522 1.01845 0.95424 0.97681 1.23881 0.93451 0.92494 0.94771 1.68254 1.02543 1.37801 1.11060 1.19689 0.94886 0.92816 0.96852 1.21817 0.95407 0.84846 0.97140 0.94399 0.97342 0.97688 0.89817 0.90529 0.90198 0.88519 0.92066 0.92974 0.74433 0.77951 0.78667 0.79098 0.79833 0.80343 0.95918 0.95005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.85 10.33 21.65 0.22 -59.63 16 2 C -0.07 -4.22 5.49 84.86 0.47 -3.75 16 3 Si 0.98 48.19 29.55 68.60 2.03 50.21 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 7 C -0.24 -14.52 10.28 84.03 0.86 -13.65 16 8 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 9 N -0.63 -34.70 3.40 -691.30 -2.35 -37.05 16 10 C 0.18 9.36 5.38 86.68 0.47 9.83 16 11 C -0.12 -4.45 6.42 31.78 0.20 -4.25 16 12 C -0.08 -2.88 3.07 -9.40 -0.03 -2.91 16 13 H 0.07 2.57 8.14 -2.38 -0.02 2.56 16 14 C -0.10 -2.46 4.85 30.59 0.15 -2.31 16 15 C 0.12 3.53 5.52 86.38 0.48 4.01 16 16 N -0.70 -18.59 5.55 -465.93 -2.58 -21.17 16 17 C 0.56 17.66 7.81 86.80 0.68 18.33 16 18 O -0.54 -21.37 15.21 -3.86 -0.06 -21.43 16 19 C 0.10 2.55 6.81 42.45 0.29 2.84 16 20 N -0.45 -8.96 9.48 -184.14 -1.75 -10.71 16 21 C 0.06 0.63 11.12 84.56 0.94 1.58 16 22 C -0.09 -0.71 9.93 22.68 0.23 -0.49 16 23 C -0.11 -1.53 5.75 -21.27 -0.12 -1.65 16 24 C -0.05 -0.36 9.94 22.49 0.22 -0.14 16 25 C -0.15 -1.24 10.03 22.18 0.22 -1.02 16 26 C 0.13 2.13 11.14 85.07 0.95 3.07 16 27 N -0.49 -13.27 8.49 -187.92 -1.60 -14.86 16 28 C 0.08 2.02 6.61 40.62 0.27 2.29 16 29 C 0.13 5.80 5.89 86.86 0.51 6.31 16 30 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 31 H 0.01 0.48 7.39 -2.38 -0.02 0.46 16 32 H 0.00 0.28 7.51 -2.39 -0.02 0.26 16 33 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.08 2.52 8.04 -2.39 -0.02 2.50 16 35 H 0.08 1.91 8.10 -2.38 -0.02 1.89 16 36 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.05 1.71 7.45 -2.39 -0.02 1.70 16 39 H 0.42 8.95 7.82 -92.71 -0.72 8.23 16 40 H 0.20 0.66 8.06 -2.91 -0.02 0.64 16 41 H 0.20 -0.41 8.06 -2.91 -0.02 -0.43 16 42 H 0.19 -0.43 8.06 -2.91 -0.02 -0.46 16 43 H 0.18 -0.08 8.06 -2.91 -0.02 -0.10 16 44 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 45 H 0.02 0.98 8.00 -2.39 -0.02 0.96 16 46 H 0.03 1.41 8.06 -2.39 -0.02 1.39 16 Total: -1.00 -89.35 380.78 0.97 -88.37 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 0.28 Total: 8.18 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: 6.78 Total: 18.09 kcal Atomic # 7 Polarization: -135.37 SS G_CDS: -8.05 Total: -143.42 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.06 Total: -21.43 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 2.03 Total: 50.21 kcal Total: -89.35 0.97 -88.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714862984.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.130 kcal (2) G-P(sol) polarization free energy of solvation -89.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds