Wall clock time and date at job start Tue Mar 31 2020 23:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 119.99941 * 2 1 4 4 H 1.48508 * 109.47242 * 270.27084 * 3 2 1 5 5 H 1.48500 * 109.47538 * 30.27377 * 3 2 1 6 6 H 1.48502 * 109.47033 * 150.27568 * 3 2 1 7 7 C 1.38816 * 119.99684 * 180.27384 * 2 1 3 8 8 H 1.07993 * 119.99575 * 179.72820 * 7 2 1 9 9 N 1.36935 * 120.00035 * 359.72209 * 7 2 1 10 10 C 1.46504 * 119.99829 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46857 * 174.90664 * 10 9 7 12 12 N 1.46508 * 110.01487 * 55.15711 * 11 10 9 13 13 C 1.34776 * 119.99573 * 65.16414 * 12 11 10 14 14 O 1.21547 * 120.00454 * 354.89861 * 13 12 11 15 15 C 1.47901 * 119.99631 * 174.90481 * 13 12 11 16 16 N 1.32129 * 120.03380 * 359.97438 * 15 13 12 17 17 C 1.31980 * 122.76966 * 179.97438 * 16 15 13 18 18 C 1.37777 * 121.72761 * 359.97438 * 17 16 15 19 19 C 1.40385 * 118.72992 * 0.02562 * 18 17 16 20 20 C 1.40645 * 122.28649 * 180.02562 * 19 18 17 21 21 C 1.36638 * 117.95262 * 179.97438 * 20 19 18 22 22 C 1.39399 * 119.92789 * 359.97438 * 21 20 19 23 23 N 1.31200 * 121.85382 * 0.02562 * 22 21 20 24 24 C 1.33267 * 121.21864 * 359.68211 * 23 22 21 25 25 C 1.54260 * 110.03692 * 293.71503 * 11 10 9 26 26 C 1.54891 * 104.19862 * 217.10603 * 25 11 10 27 27 C 1.54890 * 102.74645 * 37.94088 * 26 25 11 28 28 C 1.53875 * 110.02938 * 176.54598 * 11 10 9 29 29 H 0.97005 * 119.99878 * 359.73006 * 1 2 3 30 30 H 0.97001 * 120.00188 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.47474 * 294.91084 * 10 9 7 32 32 H 1.09000 * 109.46393 * 54.91363 * 10 9 7 33 33 H 0.96993 * 120.00090 * 245.15878 * 12 11 10 34 34 H 1.07998 * 119.13658 * 179.97438 * 17 16 15 35 35 H 1.08000 * 120.63319 * 180.02562 * 18 17 16 36 36 H 1.07996 * 121.01909 * 359.96896 * 20 19 18 37 37 H 1.07999 * 120.03434 * 180.02562 * 21 20 19 38 38 H 1.08006 * 119.07195 * 180.02562 * 22 21 20 39 39 H 1.09005 * 110.48778 * 335.78496 * 25 11 10 40 40 H 1.08999 * 110.48814 * 98.42543 * 25 11 10 41 41 H 1.09004 * 110.75210 * 279.63009 * 26 25 11 42 42 H 1.08993 * 110.75686 * 156.25751 * 26 25 11 43 43 H 1.08994 * 110.48459 * 203.38046 * 27 26 25 44 44 H 1.08995 * 110.48309 * 80.73757 * 27 26 25 45 45 H 1.09003 * 110.03283 * 238.56900 * 28 11 10 46 46 H 1.08999 * 110.03261 * 0.02562 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4919 2.0497 -1.4001 5 1 1.4506 2.6510 0.7058 6 1 3.5506 1.4384 0.6942 7 6 2.0102 -1.2022 -0.0057 8 1 3.0901 -1.2022 -0.0102 9 7 1.3255 -2.3881 -0.0057 10 6 2.0580 -3.6568 -0.0123 11 6 1.0692 -4.8172 0.1173 12 7 0.0563 -4.7332 -0.9379 13 6 0.4146 -4.8794 -2.2289 14 8 1.5883 -4.9881 -2.5254 15 6 -0.6205 -4.9073 -3.2850 16 7 -1.8967 -4.7896 -2.9634 17 6 -2.8641 -4.8068 -3.8610 18 6 -2.6020 -4.9499 -5.2061 19 6 -1.2680 -5.0806 -5.6235 20 6 -0.9155 -5.2301 -6.9768 21 6 0.4106 -5.3495 -7.2838 22 6 1.3650 -5.3203 -6.2682 23 7 1.0303 -5.1806 -5.0073 24 6 -0.2448 -5.0534 -4.6411 25 6 0.3934 -4.7834 1.5036 26 6 0.2535 -6.2756 1.8945 27 6 1.5686 -6.8941 1.3587 28 6 1.8164 -6.1592 0.0251 29 1 -0.4850 0.8401 0.0040 30 1 0.3555 -2.3881 -0.0020 31 1 2.6102 -3.7527 -0.9471 32 1 2.7550 -3.6782 0.8254 33 1 -0.8720 -4.5724 -0.7074 34 1 -3.8880 -4.7062 -3.5326 35 1 -3.4074 -4.9612 -5.9255 36 1 -1.6698 -5.2500 -7.7494 37 1 0.7190 -5.4655 -8.3123 38 1 2.4093 -5.4155 -6.5265 39 1 1.0228 -4.2582 2.2222 40 1 -0.5874 -4.3125 1.4386 41 1 -0.6114 -6.7236 1.4053 42 1 0.1872 -6.3869 2.9767 43 1 1.4454 -7.9634 1.1878 44 1 2.3877 -6.7097 2.0537 45 1 1.4249 -6.7483 -0.8042 46 1 2.8835 -5.9837 -0.1115 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715090231.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:02 Heat of formation + Delta-G solvation = 51.528715 kcal Electronic energy + Delta-G solvation = -29942.484941 eV Core-core repulsion = 26025.525711 eV Total energy + Delta-G solvation = -3916.959230 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.35312 -39.75976 -38.13938 -37.20410 -34.18516 -33.77627 -33.00288 -31.58050 -31.01855 -30.37157 -28.50522 -27.89221 -25.46675 -24.39952 -24.18590 -23.43745 -22.06571 -20.87234 -20.42000 -19.10371 -18.44920 -17.64024 -17.55825 -16.95182 -16.28160 -15.78611 -15.22527 -15.01742 -14.79159 -14.45228 -14.33169 -14.22830 -13.97467 -13.74300 -13.29171 -13.14838 -13.07933 -12.92183 -12.63842 -12.53927 -12.33910 -11.74230 -11.45453 -11.04666 -10.88451 -10.84825 -10.76925 -10.74166 -10.57713 -10.34097 -10.30206 -10.00789 -9.93928 -9.80140 -9.56511 -9.47592 -9.04007 -8.68672 -8.56109 -8.31663 -6.72840 -5.63315 -2.89021 -0.12914 0.57289 1.57844 2.71754 3.37789 3.45202 3.51490 3.56329 3.57954 4.06814 4.15637 4.20419 4.33551 4.48156 4.60208 4.64308 4.69390 4.84975 4.96940 4.97896 5.16375 5.20488 5.28973 5.42204 5.51502 5.66506 5.69579 5.72279 5.76612 5.80762 5.90648 5.91430 6.03034 6.09128 6.14545 6.18049 6.33058 6.41407 6.43985 6.54511 6.62003 6.66814 6.73197 7.06875 7.28628 7.57599 7.82441 7.83857 8.13347 8.56196 8.78007 9.67379 10.27652 10.63572 11.59955 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008478 B = 0.004322 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3301.896186 B = 6477.668106 C = 8150.099863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.017 4.017 3 Si 0.904 3.096 4 H -0.292 1.292 5 H -0.293 1.293 6 H -0.283 1.283 7 C -0.228 4.228 8 H 0.068 0.932 9 N -0.726 5.726 10 C 0.145 3.855 11 C 0.170 3.830 12 N -0.692 5.692 13 C 0.569 3.431 14 O -0.487 6.487 15 C 0.154 3.846 16 N -0.442 5.442 17 C 0.079 3.921 18 C -0.131 4.131 19 C -0.084 4.084 20 C -0.067 4.067 21 C -0.156 4.156 22 C 0.127 3.873 23 N -0.414 5.414 24 C 0.106 3.894 25 C -0.117 4.117 26 C -0.125 4.125 27 C -0.124 4.124 28 C -0.117 4.117 29 H 0.252 0.748 30 H 0.382 0.618 31 H 0.039 0.961 32 H 0.026 0.974 33 H 0.405 0.595 34 H 0.165 0.835 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.164 0.836 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.009 -17.130 -10.822 21.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.213 4.213 3 Si 0.735 3.265 4 H -0.220 1.220 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.359 4.359 8 H 0.086 0.914 9 N -0.370 5.370 10 C 0.017 3.983 11 C 0.084 3.916 12 N -0.345 5.345 13 C 0.351 3.649 14 O -0.359 6.359 15 C 0.001 3.999 16 N -0.155 5.155 17 C -0.068 4.068 18 C -0.152 4.152 19 C -0.091 4.091 20 C -0.093 4.093 21 C -0.177 4.177 22 C -0.047 4.047 23 N -0.121 5.121 24 C -0.019 4.019 25 C -0.155 4.155 26 C -0.163 4.163 27 C -0.161 4.161 28 C -0.156 4.156 29 H 0.062 0.938 30 H 0.216 0.784 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.240 0.760 34 H 0.182 0.818 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.181 0.819 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.738 -16.974 -9.393 19.970 hybrid contribution -0.931 1.181 -1.714 2.281 sum -5.669 -15.793 -11.107 20.123 Atomic orbital electron populations 1.69663 1.04986 1.25218 1.58671 1.24672 0.95483 0.97405 1.03690 0.86223 0.78671 0.84178 0.77385 1.22020 1.21931 1.20829 1.19247 0.90995 0.84283 1.41388 0.91389 1.42224 1.05723 0.99728 1.89325 1.21170 0.93029 0.85062 0.99082 1.21272 0.88648 0.95489 0.86176 1.45876 1.11852 1.71914 1.04835 1.17395 0.87117 0.78404 0.81983 1.90831 1.16512 1.47136 1.81408 1.21751 0.91079 0.95689 0.91399 1.67386 0.99783 1.09348 1.38992 1.22592 0.98654 0.96562 0.88942 1.22332 0.95485 0.99595 0.97799 1.18968 0.94627 1.00710 0.94797 1.21380 0.97136 0.96346 0.94430 1.22106 0.93884 1.00239 1.01513 1.23326 1.00714 0.92966 0.87701 1.68327 1.17069 1.08109 1.18616 1.19502 0.89648 0.99161 0.93621 1.22577 1.01485 0.96043 0.95358 1.22533 0.97589 0.95914 1.00222 1.22380 0.97738 0.98953 0.97079 1.22412 1.01128 0.94885 0.97141 0.93831 0.78402 0.94357 0.95599 0.75968 0.81753 0.83815 0.83906 0.84080 0.81868 0.89598 0.90899 0.91804 0.91713 0.92171 0.91601 0.91561 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.24 13.06 55.49 0.72 -28.52 16 2 C -0.02 -0.52 5.50 -17.43 -0.10 -0.62 16 3 Si 0.90 23.53 29.55 -169.99 -5.02 18.51 16 4 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 5 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 6 H -0.28 -7.15 7.11 56.52 0.40 -6.74 16 7 C -0.23 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.73 -19.41 5.27 -59.91 -0.32 -19.72 16 10 C 0.14 3.26 4.64 -4.04 -0.02 3.24 16 11 C 0.17 3.05 0.57 -130.70 -0.07 2.97 16 12 N -0.69 -12.63 4.48 -47.48 -0.21 -12.84 16 13 C 0.57 11.25 6.85 -12.30 -0.08 11.17 16 14 O -0.49 -10.75 12.48 5.32 0.07 -10.68 16 15 C 0.15 2.74 6.81 -82.55 -0.56 2.18 16 16 N -0.44 -6.87 9.49 -9.55 -0.09 -6.96 16 17 C 0.08 0.93 11.12 -17.66 -0.20 0.73 16 18 C -0.13 -1.36 9.93 -38.94 -0.39 -1.74 16 19 C -0.08 -1.06 5.75 -106.79 -0.61 -1.67 16 20 C -0.07 -0.62 9.94 -39.25 -0.39 -1.01 16 21 C -0.16 -1.39 10.03 -39.73 -0.40 -1.79 16 22 C 0.13 1.53 11.14 -17.39 -0.19 1.33 16 23 N -0.41 -6.96 8.49 -10.74 -0.09 -7.05 16 24 C 0.11 1.74 6.61 -84.62 -0.56 1.18 16 25 C -0.12 -1.86 5.74 -25.07 -0.14 -2.00 16 26 C -0.12 -1.59 6.91 -24.74 -0.17 -1.76 16 27 C -0.12 -1.58 6.83 -25.07 -0.17 -1.75 16 28 C -0.12 -1.85 5.22 -25.61 -0.13 -1.98 16 29 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.38 10.58 7.19 -40.82 -0.29 10.28 16 31 H 0.04 0.96 6.55 -51.93 -0.34 0.62 16 32 H 0.03 0.58 8.04 -51.93 -0.42 0.16 16 33 H 0.40 6.97 7.59 -40.82 -0.31 6.66 16 34 H 0.17 1.36 8.06 -52.49 -0.42 0.93 16 35 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 38 H 0.16 1.48 8.06 -52.48 -0.42 1.06 16 39 H 0.09 1.46 7.79 -51.93 -0.40 1.05 16 40 H 0.07 1.18 7.70 -51.93 -0.40 0.78 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.07 1.10 6.99 -51.93 -0.36 0.74 16 46 H 0.07 1.21 7.67 -51.93 -0.40 0.81 16 LS Contribution 376.26 15.07 5.67 5.67 Total: -1.00 -36.88 376.26 -9.90 -46.77 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -6.28 Total: 13.23 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -4.35 Total: 1.59 kcal Atomic # 7 Polarization: -75.10 SS G_CDS: 0.01 Total: -75.09 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.07 Total: -10.68 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -5.02 Total: 18.51 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.88 -9.90 -46.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715090231.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.303 kcal (2) G-P(sol) polarization free energy of solvation -36.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds