Wall clock time and date at job start Tue Mar 31 2020 23:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 119.99941 * 2 1 4 4 H 1.48508 * 109.47242 * 270.27084 * 3 2 1 5 5 H 1.48500 * 109.47538 * 30.27377 * 3 2 1 6 6 H 1.48502 * 109.47033 * 150.27568 * 3 2 1 7 7 C 1.38816 * 119.99684 * 180.27384 * 2 1 3 8 8 H 1.07993 * 119.99575 * 179.72820 * 7 2 1 9 9 N 1.36935 * 120.00035 * 359.72209 * 7 2 1 10 10 C 1.46504 * 119.99829 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46857 * 174.90664 * 10 9 7 12 12 N 1.46508 * 110.01487 * 55.15711 * 11 10 9 13 13 C 1.34776 * 119.99573 * 65.16414 * 12 11 10 14 14 O 1.21547 * 120.00454 * 354.89861 * 13 12 11 15 15 C 1.47901 * 119.99631 * 174.90481 * 13 12 11 16 16 N 1.32129 * 120.03380 * 359.97438 * 15 13 12 17 17 C 1.31980 * 122.76966 * 179.97438 * 16 15 13 18 18 C 1.37777 * 121.72761 * 359.97438 * 17 16 15 19 19 C 1.40385 * 118.72992 * 0.02562 * 18 17 16 20 20 C 1.40645 * 122.28649 * 180.02562 * 19 18 17 21 21 C 1.36638 * 117.95262 * 179.97438 * 20 19 18 22 22 C 1.39399 * 119.92789 * 359.97438 * 21 20 19 23 23 N 1.31200 * 121.85382 * 0.02562 * 22 21 20 24 24 C 1.33267 * 121.21864 * 359.68211 * 23 22 21 25 25 C 1.54260 * 110.03692 * 293.71503 * 11 10 9 26 26 C 1.54891 * 104.19862 * 217.10603 * 25 11 10 27 27 C 1.54890 * 102.74645 * 37.94088 * 26 25 11 28 28 C 1.53875 * 110.02938 * 176.54598 * 11 10 9 29 29 H 0.97005 * 119.99878 * 359.73006 * 1 2 3 30 30 H 0.97001 * 120.00188 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.47474 * 294.91084 * 10 9 7 32 32 H 1.09000 * 109.46393 * 54.91363 * 10 9 7 33 33 H 0.96993 * 120.00090 * 245.15878 * 12 11 10 34 34 H 1.07998 * 119.13658 * 179.97438 * 17 16 15 35 35 H 1.08000 * 120.63319 * 180.02562 * 18 17 16 36 36 H 1.07996 * 121.01909 * 359.96896 * 20 19 18 37 37 H 1.07999 * 120.03434 * 180.02562 * 21 20 19 38 38 H 1.08006 * 119.07195 * 180.02562 * 22 21 20 39 39 H 1.09005 * 110.48778 * 335.78496 * 25 11 10 40 40 H 1.08999 * 110.48814 * 98.42543 * 25 11 10 41 41 H 1.09004 * 110.75210 * 279.63009 * 26 25 11 42 42 H 1.08993 * 110.75686 * 156.25751 * 26 25 11 43 43 H 1.08994 * 110.48459 * 203.38046 * 27 26 25 44 44 H 1.08995 * 110.48309 * 80.73757 * 27 26 25 45 45 H 1.09003 * 110.03283 * 238.56900 * 28 11 10 46 46 H 1.08999 * 110.03261 * 0.02562 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4919 2.0497 -1.4001 5 1 1.4506 2.6510 0.7058 6 1 3.5506 1.4384 0.6942 7 6 2.0102 -1.2022 -0.0057 8 1 3.0901 -1.2022 -0.0102 9 7 1.3255 -2.3881 -0.0057 10 6 2.0580 -3.6568 -0.0123 11 6 1.0692 -4.8172 0.1173 12 7 0.0563 -4.7332 -0.9379 13 6 0.4146 -4.8794 -2.2289 14 8 1.5883 -4.9881 -2.5254 15 6 -0.6205 -4.9073 -3.2850 16 7 -1.8967 -4.7896 -2.9634 17 6 -2.8641 -4.8068 -3.8610 18 6 -2.6020 -4.9499 -5.2061 19 6 -1.2680 -5.0806 -5.6235 20 6 -0.9155 -5.2301 -6.9768 21 6 0.4106 -5.3495 -7.2838 22 6 1.3650 -5.3203 -6.2682 23 7 1.0303 -5.1806 -5.0073 24 6 -0.2448 -5.0534 -4.6411 25 6 0.3934 -4.7834 1.5036 26 6 0.2535 -6.2756 1.8945 27 6 1.5686 -6.8941 1.3587 28 6 1.8164 -6.1592 0.0251 29 1 -0.4850 0.8401 0.0040 30 1 0.3555 -2.3881 -0.0020 31 1 2.6102 -3.7527 -0.9471 32 1 2.7550 -3.6782 0.8254 33 1 -0.8720 -4.5724 -0.7074 34 1 -3.8880 -4.7062 -3.5326 35 1 -3.4074 -4.9612 -5.9255 36 1 -1.6698 -5.2500 -7.7494 37 1 0.7190 -5.4655 -8.3123 38 1 2.4093 -5.4155 -6.5265 39 1 1.0228 -4.2582 2.2222 40 1 -0.5874 -4.3125 1.4386 41 1 -0.6114 -6.7236 1.4053 42 1 0.1872 -6.3869 2.9767 43 1 1.4454 -7.9634 1.1878 44 1 2.3877 -6.7097 2.0537 45 1 1.4249 -6.7483 -0.8042 46 1 2.8835 -5.9837 -0.1115 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715090231.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:01 Heat of formation + Delta-G solvation = 24.858885 kcal Electronic energy + Delta-G solvation = -29943.641431 eV Core-core repulsion = 26025.525711 eV Total energy + Delta-G solvation = -3918.115720 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.34516 -41.13016 -39.13817 -38.55360 -36.18051 -34.75929 -34.42990 -33.03271 -32.45021 -31.50453 -29.80512 -29.47819 -26.64532 -26.15027 -25.10068 -24.52324 -23.96991 -22.08387 -21.57276 -20.41194 -19.66160 -19.14211 -18.72221 -18.47476 -17.29718 -17.25345 -16.55957 -16.38822 -16.03683 -15.82325 -15.47960 -15.44817 -15.23427 -15.13519 -15.02186 -14.52912 -14.29724 -14.07447 -14.00115 -13.72153 -13.48637 -13.21194 -13.11882 -12.83929 -12.66909 -12.26058 -12.19044 -11.99430 -11.91879 -11.81528 -11.77561 -11.71243 -11.40744 -11.20924 -10.98088 -10.84764 -10.36736 -10.11698 -9.90994 -9.44544 -8.96869 -7.95989 -5.23178 -1.08107 -0.32254 0.67392 1.41151 1.44008 1.52586 1.70587 2.10473 2.26247 2.53498 3.05061 3.11657 3.24470 3.36075 3.44491 3.53296 3.66631 3.71652 3.74579 3.92670 3.94456 4.17506 4.24158 4.30019 4.40625 4.47697 4.51987 4.55082 4.60629 4.65611 4.68922 4.81296 4.88552 4.92109 4.94395 5.08817 5.09752 5.10873 5.19462 5.25360 5.33787 5.36472 5.44591 5.49331 5.63246 5.76190 6.25765 6.51583 6.71656 6.97156 7.32306 7.35601 8.07780 8.35939 9.27341 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008478 B = 0.004322 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3301.896186 B = 6477.668106 C = 8150.099863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.072 4.072 3 Si 0.972 3.028 4 H -0.293 1.293 5 H -0.288 1.288 6 H -0.270 1.270 7 C -0.245 4.245 8 H 0.065 0.935 9 N -0.731 5.731 10 C 0.149 3.851 11 C 0.171 3.829 12 N -0.690 5.690 13 C 0.561 3.439 14 O -0.526 6.526 15 C 0.097 3.903 16 N -0.453 5.453 17 C 0.053 3.947 18 C -0.093 4.093 19 C -0.106 4.106 20 C -0.051 4.051 21 C -0.152 4.152 22 C 0.124 3.876 23 N -0.484 5.484 24 C 0.081 3.919 25 C -0.114 4.114 26 C -0.112 4.112 27 C -0.115 4.115 28 C -0.110 4.110 29 H 0.251 0.749 30 H 0.375 0.625 31 H 0.007 0.993 32 H 0.028 0.972 33 H 0.407 0.593 34 H 0.200 0.800 35 H 0.198 0.802 36 H 0.194 0.806 37 H 0.188 0.812 38 H 0.181 0.819 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.054 0.946 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.890 -17.993 -12.847 23.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.801 3.199 4 H -0.220 1.220 5 H -0.214 1.214 6 H -0.195 1.195 7 C -0.377 4.377 8 H 0.083 0.917 9 N -0.373 5.373 10 C 0.021 3.979 11 C 0.085 3.915 12 N -0.342 5.342 13 C 0.345 3.655 14 O -0.401 6.401 15 C -0.054 4.054 16 N -0.166 5.166 17 C -0.095 4.095 18 C -0.113 4.113 19 C -0.114 4.114 20 C -0.077 4.077 21 C -0.173 4.173 22 C -0.050 4.050 23 N -0.193 5.193 24 C -0.043 4.043 25 C -0.152 4.152 26 C -0.149 4.149 27 C -0.152 4.152 28 C -0.149 4.149 29 H 0.060 0.940 30 H 0.208 0.792 31 H 0.025 0.975 32 H 0.046 0.954 33 H 0.243 0.757 34 H 0.217 0.783 35 H 0.216 0.784 36 H 0.211 0.789 37 H 0.205 0.795 38 H 0.197 0.803 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.073 0.927 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.599 -17.863 -11.396 22.193 hybrid contribution -0.373 1.433 -1.308 1.975 sum -6.971 -16.431 -12.704 21.908 Atomic orbital electron populations 1.69819 1.06366 1.25888 1.59546 1.25495 0.96466 1.00735 1.03729 0.85162 0.77892 0.79671 0.77188 1.22029 1.21381 1.19477 1.19593 0.91198 0.85703 1.41246 0.91662 1.42306 1.05441 1.00482 1.89099 1.21192 0.93948 0.85469 0.97281 1.21258 0.88210 0.94489 0.87506 1.45870 1.11837 1.71695 1.04770 1.17926 0.87504 0.77365 0.82702 1.90772 1.18184 1.49034 1.82108 1.21400 0.91444 1.00958 0.91646 1.67260 0.99620 1.08893 1.40864 1.23290 0.99207 0.97303 0.89668 1.22946 0.95791 0.94554 0.98055 1.19397 0.94755 1.01426 0.95799 1.21986 0.98432 0.93574 0.93662 1.22523 0.93271 0.98846 1.02655 1.23904 1.02672 0.91064 0.87350 1.68237 1.18202 1.11530 1.21291 1.19677 0.90786 0.99885 0.93978 1.22531 1.00443 0.98695 0.93542 1.22488 0.97797 0.92815 1.01795 1.22370 0.98182 0.99736 0.94954 1.22320 0.99743 0.93906 0.98945 0.94036 0.79231 0.97532 0.95392 0.75681 0.78289 0.78449 0.78900 0.79500 0.80252 0.90826 0.91535 0.90873 0.89248 0.89937 0.90565 0.92711 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.89 13.06 21.65 0.28 -61.61 16 2 C -0.07 -4.42 5.50 84.86 0.47 -3.95 16 3 Si 0.97 49.31 29.55 68.60 2.03 51.34 16 4 H -0.29 -14.80 7.11 99.48 0.71 -14.09 16 5 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 7 C -0.25 -15.12 9.99 84.03 0.84 -14.28 16 8 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 9 N -0.73 -41.35 5.27 -343.45 -1.81 -43.16 16 10 C 0.15 7.21 4.64 86.38 0.40 7.61 16 11 C 0.17 6.57 0.57 4.32 0.00 6.57 16 12 N -0.69 -27.32 4.48 -422.42 -1.89 -29.22 16 13 C 0.56 24.37 6.85 86.80 0.59 24.96 16 14 O -0.53 -25.75 12.48 -3.86 -0.05 -25.80 16 15 C 0.10 3.69 6.81 42.46 0.29 3.98 16 16 N -0.45 -14.64 9.49 -184.13 -1.75 -16.39 16 17 C 0.05 1.17 11.12 84.56 0.94 2.11 16 18 C -0.09 -1.61 9.93 22.68 0.23 -1.39 16 19 C -0.11 -2.48 5.75 -21.27 -0.12 -2.60 16 20 C -0.05 -0.74 9.94 22.48 0.22 -0.52 16 21 C -0.15 -2.24 10.03 22.18 0.22 -2.02 16 22 C 0.12 2.97 11.14 85.07 0.95 3.92 16 23 N -0.48 -17.37 8.49 -187.91 -1.60 -18.96 16 24 C 0.08 2.79 6.61 40.62 0.27 3.06 16 25 C -0.11 -3.74 5.74 31.67 0.18 -3.56 16 26 C -0.11 -2.69 6.91 31.89 0.22 -2.47 16 27 C -0.11 -2.83 6.83 31.67 0.22 -2.62 16 28 C -0.11 -3.69 5.22 31.32 0.16 -3.53 16 29 H 0.25 15.48 8.31 -92.70 -0.77 14.71 16 30 H 0.38 22.00 7.19 -92.71 -0.67 21.34 16 31 H 0.01 0.37 6.55 -2.39 -0.02 0.36 16 32 H 0.03 1.33 8.04 -2.39 -0.02 1.31 16 33 H 0.41 15.22 7.59 -92.71 -0.70 14.51 16 34 H 0.20 2.76 8.06 -2.91 -0.02 2.73 16 35 H 0.20 1.20 8.06 -2.91 -0.02 1.18 16 36 H 0.19 0.82 8.06 -2.91 -0.02 0.79 16 37 H 0.19 0.98 8.06 -2.91 -0.02 0.95 16 38 H 0.18 3.31 8.06 -2.91 -0.02 3.29 16 39 H 0.07 2.58 7.79 -2.38 -0.02 2.56 16 40 H 0.07 2.24 7.70 -2.39 -0.02 2.22 16 41 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.05 1.95 6.99 -2.39 -0.02 1.94 16 46 H 0.06 2.11 7.67 -2.39 -0.02 2.09 16 Total: -1.00 -88.71 376.26 0.95 -87.76 By element: Atomic # 1 Polarization: 41.12 SS G_CDS: -0.34 Total: 40.77 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 6.08 Total: 15.27 kcal Atomic # 7 Polarization: -162.57 SS G_CDS: -6.77 Total: -169.34 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.05 Total: -25.80 kcal Atomic # 14 Polarization: 49.31 SS G_CDS: 2.03 Total: 51.34 kcal Total: -88.71 0.95 -87.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715090231.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.623 kcal (2) G-P(sol) polarization free energy of solvation -88.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds