Wall clock time and date at job start Tue Mar 31 2020 23:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99994 * 2 1 4 4 H 1.48494 * 109.47059 * 239.99829 * 3 2 1 5 5 H 1.48496 * 109.46765 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47034 * 120.00012 * 3 2 1 7 7 C 1.38811 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00009 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00318 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00094 * 186.53630 * 9 7 2 11 11 C 1.52998 * 110.54249 * 58.61966 * 10 9 7 12 12 N 1.46502 * 109.46917 * 57.61629 * 11 10 9 13 13 C 1.34779 * 120.00128 * 175.54330 * 12 11 10 14 14 O 1.21492 * 119.99716 * 359.97438 * 13 12 11 15 15 C 1.48356 * 119.99995 * 180.02562 * 13 12 11 16 16 C 1.40166 * 119.20136 * 180.02562 * 15 13 12 17 17 C 1.36622 * 119.70402 * 179.97438 * 16 15 13 18 18 C 1.40590 * 118.20850 * 359.97438 * 17 16 15 19 19 C 1.40732 * 121.37099 * 180.02562 * 18 17 16 20 20 C 1.36588 * 118.13536 * 179.97438 * 19 18 17 21 21 C 1.39431 * 119.84130 * 359.97438 * 20 19 18 22 22 N 1.31019 * 121.84280 * 359.97438 * 21 20 19 23 23 C 1.33863 * 121.42209 * 0.02562 * 22 21 20 24 24 N 1.31885 * 119.20353 * 359.72648 * 15 13 12 25 25 C 1.54896 * 110.48399 * 296.00869 * 10 9 7 26 26 C 1.54885 * 102.74681 * 279.26366 * 25 10 9 27 27 C 1.54268 * 104.19794 * 322.05817 * 26 25 10 28 28 C 1.53873 * 106.59729 * 23.61146 * 27 26 25 29 29 H 0.96996 * 119.99889 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99516 * 6.53160 * 9 7 2 31 31 H 1.08994 * 109.47636 * 177.61646 * 11 10 9 32 32 H 1.09001 * 109.47425 * 297.62329 * 11 10 9 33 33 H 0.97001 * 120.00062 * 355.53895 * 12 11 10 34 34 H 1.07999 * 120.14539 * 359.94837 * 16 15 13 35 35 H 1.08002 * 120.89257 * 179.97438 * 17 16 15 36 36 H 1.08007 * 120.93399 * 359.94998 * 19 18 17 37 37 H 1.07999 * 120.07835 * 180.02562 * 20 19 18 38 38 H 1.07998 * 119.07822 * 180.02562 * 21 20 19 39 39 H 1.09002 * 110.75524 * 37.58275 * 25 10 9 40 40 H 1.09002 * 110.75359 * 160.95362 * 25 10 9 41 41 H 1.09006 * 110.48728 * 203.38295 * 26 25 10 42 42 H 1.09003 * 110.48825 * 80.74181 * 26 25 10 43 43 H 1.09003 * 110.03115 * 264.32554 * 27 26 25 44 44 H 1.09004 * 110.03015 * 142.89304 * 27 26 25 45 45 H 1.08999 * 110.03144 * 240.71244 * 28 27 26 46 46 H 1.09000 * 110.03138 * 119.28619 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0509 -3.6527 0.1455 11 6 2.8396 -3.6720 1.4564 12 7 1.9234 -3.4645 2.5806 13 6 2.3828 -3.5325 3.8458 14 8 3.5567 -3.7663 4.0540 15 6 1.4549 -3.3230 4.9842 16 6 1.9508 -3.3970 6.2932 17 6 1.1054 -3.2052 7.3492 18 6 -0.2476 -2.9370 7.0771 19 6 -1.1760 -2.7282 8.1140 20 6 -2.4739 -2.4719 7.7745 21 6 -2.8429 -2.4233 6.4308 22 7 -1.9755 -2.6171 5.4683 23 6 -0.6879 -2.8728 5.7303 24 7 0.1846 -3.0659 4.7401 25 6 2.9975 -3.8759 -1.0600 26 6 2.0414 -4.4237 -2.1485 27 6 1.0682 -5.3355 -1.3731 28 6 1.0742 -4.8452 0.0855 29 1 -0.4850 0.8400 0.0004 30 1 0.3603 -2.3908 -0.0954 31 1 3.3377 -4.6351 1.5667 32 1 3.5849 -2.8767 1.4438 33 1 0.9861 -3.2782 2.4144 34 1 2.9963 -3.6050 6.4662 35 1 1.4668 -3.2583 8.3656 36 1 -0.8708 -2.7699 9.1492 37 1 -3.2124 -2.3065 8.5450 38 1 -3.8725 -2.2192 6.1763 39 1 3.4464 -2.9349 -1.3781 40 1 3.7664 -4.6092 -0.8167 41 1 2.5964 -5.0002 -2.8887 42 1 1.5003 -3.6073 -2.6269 43 1 1.4078 -6.3702 -1.4206 44 1 0.0649 -5.2517 -1.7910 45 1 1.4167 -5.6420 0.7458 46 1 0.0739 -4.5236 0.3754 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715299112.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:15 Heat of formation + Delta-G solvation = 44.602183 kcal Electronic energy + Delta-G solvation = -29378.102039 eV Core-core repulsion = 25460.842452 eV Total energy + Delta-G solvation = -3917.259587 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.34144 -39.50876 -38.28552 -37.33967 -34.41845 -33.95524 -33.19252 -31.37129 -31.05578 -30.40379 -28.17946 -27.98077 -25.88876 -24.57990 -23.91042 -23.18718 -22.73378 -20.78123 -19.83812 -19.06802 -18.55876 -17.86982 -17.32498 -16.89232 -16.18170 -15.71070 -15.38806 -15.22732 -14.76149 -14.59599 -14.40647 -14.35609 -14.20465 -13.84176 -13.38386 -13.30801 -13.24555 -12.86152 -12.53596 -12.24415 -12.05950 -11.75649 -11.29526 -11.26085 -11.04153 -10.77709 -10.73835 -10.68473 -10.58061 -10.46249 -10.24706 -9.94125 -9.84498 -9.76799 -9.58408 -9.11084 -9.09744 -9.05313 -8.82841 -8.41408 -6.93685 -5.72389 -3.01931 -0.05193 0.36362 1.72684 2.33955 3.29903 3.37417 3.46620 3.51578 3.52306 3.70471 4.08996 4.20504 4.42323 4.47601 4.57584 4.62018 4.76972 4.92744 5.12591 5.16214 5.20602 5.23480 5.31067 5.47607 5.62523 5.65971 5.67702 5.74061 5.84203 5.92600 6.00145 6.01469 6.04067 6.21428 6.25861 6.33459 6.41216 6.43642 6.51542 6.61137 6.68951 6.85514 6.87356 6.99961 7.10017 7.22118 7.76160 7.93440 8.12794 8.45548 8.60118 9.57234 10.11812 10.47420 11.49238 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009783 B = 0.003681 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.491538 B = 7605.211358 C = 8544.371967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.006 4.006 3 Si 0.900 3.100 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.288 1.288 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.707 5.707 10 C 0.189 3.811 11 C 0.116 3.884 12 N -0.670 5.670 13 C 0.559 3.441 14 O -0.546 6.546 15 C 0.153 3.847 16 C -0.129 4.129 17 C -0.052 4.052 18 C -0.146 4.146 19 C -0.049 4.049 20 C -0.176 4.176 21 C 0.155 3.845 22 N -0.451 5.451 23 C 0.304 3.696 24 N -0.425 5.425 25 C -0.130 4.130 26 C -0.113 4.113 27 C -0.118 4.118 28 C -0.125 4.125 29 H 0.255 0.745 30 H 0.386 0.614 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.418 0.582 34 H 0.156 0.844 35 H 0.148 0.852 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.168 0.832 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.892 -10.109 14.899 18.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.202 4.202 3 Si 0.731 3.269 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.368 4.368 8 H 0.086 0.914 9 N -0.348 5.348 10 C 0.096 3.904 11 C -0.010 4.010 12 N -0.319 5.319 13 C 0.341 3.659 14 O -0.424 6.424 15 C -0.005 4.005 16 C -0.149 4.149 17 C -0.079 4.079 18 C -0.151 4.151 19 C -0.075 4.075 20 C -0.196 4.196 21 C -0.022 4.022 22 N -0.159 5.159 23 C 0.065 3.935 24 N -0.137 5.137 25 C -0.171 4.171 26 C -0.150 4.150 27 C -0.156 4.156 28 C -0.163 4.163 29 H 0.065 0.935 30 H 0.221 0.779 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.256 0.744 34 H 0.173 0.827 35 H 0.166 0.834 36 H 0.160 0.840 37 H 0.161 0.839 38 H 0.185 0.815 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.515 -10.035 13.192 16.764 hybrid contribution 0.185 1.212 1.692 2.090 sum -2.330 -8.822 14.884 17.459 Atomic orbital electron populations 1.69647 1.04951 1.25645 1.57101 1.24690 0.95365 0.97407 1.02751 0.86391 0.78636 0.84096 0.77798 1.21293 1.21836 1.21436 1.19015 0.90886 0.83829 1.43030 0.91358 1.42396 1.06357 0.99351 1.86693 1.20621 0.91428 0.87383 0.90947 1.21971 0.92712 1.00179 0.86149 1.45723 1.14760 1.67156 1.04277 1.17812 0.86514 0.78640 0.82896 1.90740 1.16054 1.50689 1.84959 1.21648 0.89988 0.94729 0.94149 1.21860 1.02436 0.99008 0.91644 1.21414 0.91251 0.95122 1.00127 1.19736 0.95967 1.03629 0.95775 1.21459 0.92714 0.94458 0.98904 1.22048 0.97248 1.01936 0.98323 1.23167 0.99276 0.91675 0.88106 1.67692 1.00722 1.10909 1.36579 1.19254 0.91106 0.96588 0.86546 1.67479 1.01757 1.09312 1.35158 1.22881 0.97247 1.00541 0.96391 1.22193 0.97073 0.98536 0.97232 1.22053 0.99512 0.98395 0.95603 1.22387 1.00126 0.97323 0.96441 0.93550 0.77924 0.92326 0.91279 0.74408 0.82660 0.83449 0.83987 0.83921 0.81487 0.90713 0.92836 0.93091 0.91175 0.92836 0.92420 0.92057 0.91486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.58 13.07 55.49 0.73 -26.86 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 3 Si 0.90 22.70 29.55 -169.99 -5.02 17.67 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 7 C -0.24 -6.28 8.59 -15.06 -0.13 -6.40 16 8 H 0.07 1.80 7.13 -52.49 -0.37 1.43 16 9 N -0.71 -16.56 4.70 -45.70 -0.21 -16.78 16 10 C 0.19 3.58 0.52 -130.16 -0.07 3.51 16 11 C 0.12 2.22 4.29 -4.04 -0.02 2.20 16 12 N -0.67 -13.13 5.23 -61.09 -0.32 -13.45 16 13 C 0.56 10.68 7.81 -12.09 -0.09 10.59 16 14 O -0.55 -11.13 16.28 5.37 0.09 -11.04 16 15 C 0.15 2.61 6.75 -82.96 -0.56 2.05 16 16 C -0.13 -1.71 9.54 -39.44 -0.38 -2.09 16 17 C -0.05 -0.56 9.89 -39.28 -0.39 -0.95 16 18 C -0.15 -1.80 5.75 -106.69 -0.61 -2.41 16 19 C -0.05 -0.42 9.90 -39.24 -0.39 -0.81 16 20 C -0.18 -1.39 10.04 -39.73 -0.40 -1.79 16 21 C 0.16 1.65 11.14 -17.45 -0.19 1.46 16 22 N -0.45 -7.14 10.43 -12.60 -0.13 -7.27 16 23 C 0.30 4.96 7.62 -157.91 -1.20 3.76 16 24 N -0.43 -7.81 9.56 -9.19 -0.09 -7.90 16 25 C -0.13 -2.28 5.90 -24.74 -0.15 -2.43 16 26 C -0.11 -1.82 6.79 -25.07 -0.17 -1.99 16 27 C -0.12 -1.77 6.80 -25.61 -0.17 -1.94 16 28 C -0.12 -2.06 5.70 -25.62 -0.15 -2.21 16 29 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.39 9.85 7.50 -40.82 -0.31 9.54 16 31 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 32 H 0.07 1.47 7.52 -51.93 -0.39 1.08 16 33 H 0.42 8.65 7.37 -40.82 -0.30 8.35 16 34 H 0.16 1.84 7.60 -52.49 -0.40 1.44 16 35 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 37 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 38 H 0.17 1.21 8.06 -52.49 -0.42 0.78 16 39 H 0.07 1.46 7.19 -51.93 -0.37 1.09 16 40 H 0.05 0.83 8.06 -51.93 -0.42 0.41 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.06 0.93 7.80 -51.93 -0.40 0.53 16 46 H 0.07 1.17 7.76 -51.93 -0.40 0.77 16 LS Contribution 381.77 15.07 5.75 5.75 Total: -1.00 -33.55 381.77 -10.68 -44.23 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -6.31 Total: 15.33 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -5.16 Total: 0.31 kcal Atomic # 7 Polarization: -72.23 SS G_CDS: -0.03 Total: -72.26 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.55 -10.68 -44.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715299112.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.834 kcal (2) G-P(sol) polarization free energy of solvation -33.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds