Wall clock time and date at job start Tue Mar 31 2020 23:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99994 * 2 1 4 4 H 1.48494 * 109.47059 * 239.99829 * 3 2 1 5 5 H 1.48496 * 109.46765 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47034 * 120.00012 * 3 2 1 7 7 C 1.38811 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00009 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00318 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00094 * 186.53630 * 9 7 2 11 11 C 1.52998 * 110.54249 * 58.61966 * 10 9 7 12 12 N 1.46502 * 109.46917 * 57.61629 * 11 10 9 13 13 C 1.34779 * 120.00128 * 175.54330 * 12 11 10 14 14 O 1.21492 * 119.99716 * 359.97438 * 13 12 11 15 15 C 1.48356 * 119.99995 * 180.02562 * 13 12 11 16 16 C 1.40166 * 119.20136 * 180.02562 * 15 13 12 17 17 C 1.36622 * 119.70402 * 179.97438 * 16 15 13 18 18 C 1.40590 * 118.20850 * 359.97438 * 17 16 15 19 19 C 1.40732 * 121.37099 * 180.02562 * 18 17 16 20 20 C 1.36588 * 118.13536 * 179.97438 * 19 18 17 21 21 C 1.39431 * 119.84130 * 359.97438 * 20 19 18 22 22 N 1.31019 * 121.84280 * 359.97438 * 21 20 19 23 23 C 1.33863 * 121.42209 * 0.02562 * 22 21 20 24 24 N 1.31885 * 119.20353 * 359.72648 * 15 13 12 25 25 C 1.54896 * 110.48399 * 296.00869 * 10 9 7 26 26 C 1.54885 * 102.74681 * 279.26366 * 25 10 9 27 27 C 1.54268 * 104.19794 * 322.05817 * 26 25 10 28 28 C 1.53873 * 106.59729 * 23.61146 * 27 26 25 29 29 H 0.96996 * 119.99889 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99516 * 6.53160 * 9 7 2 31 31 H 1.08994 * 109.47636 * 177.61646 * 11 10 9 32 32 H 1.09001 * 109.47425 * 297.62329 * 11 10 9 33 33 H 0.97001 * 120.00062 * 355.53895 * 12 11 10 34 34 H 1.07999 * 120.14539 * 359.94837 * 16 15 13 35 35 H 1.08002 * 120.89257 * 179.97438 * 17 16 15 36 36 H 1.08007 * 120.93399 * 359.94998 * 19 18 17 37 37 H 1.07999 * 120.07835 * 180.02562 * 20 19 18 38 38 H 1.07998 * 119.07822 * 180.02562 * 21 20 19 39 39 H 1.09002 * 110.75524 * 37.58275 * 25 10 9 40 40 H 1.09002 * 110.75359 * 160.95362 * 25 10 9 41 41 H 1.09006 * 110.48728 * 203.38295 * 26 25 10 42 42 H 1.09003 * 110.48825 * 80.74181 * 26 25 10 43 43 H 1.09003 * 110.03115 * 264.32554 * 27 26 25 44 44 H 1.09004 * 110.03015 * 142.89304 * 27 26 25 45 45 H 1.08999 * 110.03144 * 240.71244 * 28 27 26 46 46 H 1.09000 * 110.03138 * 119.28619 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0509 -3.6527 0.1455 11 6 2.8396 -3.6720 1.4564 12 7 1.9234 -3.4645 2.5806 13 6 2.3828 -3.5325 3.8458 14 8 3.5567 -3.7663 4.0540 15 6 1.4549 -3.3230 4.9842 16 6 1.9508 -3.3970 6.2932 17 6 1.1054 -3.2052 7.3492 18 6 -0.2476 -2.9370 7.0771 19 6 -1.1760 -2.7282 8.1140 20 6 -2.4739 -2.4719 7.7745 21 6 -2.8429 -2.4233 6.4308 22 7 -1.9755 -2.6171 5.4683 23 6 -0.6879 -2.8728 5.7303 24 7 0.1846 -3.0659 4.7401 25 6 2.9975 -3.8759 -1.0600 26 6 2.0414 -4.4237 -2.1485 27 6 1.0682 -5.3355 -1.3731 28 6 1.0742 -4.8452 0.0855 29 1 -0.4850 0.8400 0.0004 30 1 0.3603 -2.3908 -0.0954 31 1 3.3377 -4.6351 1.5667 32 1 3.5849 -2.8767 1.4438 33 1 0.9861 -3.2782 2.4144 34 1 2.9963 -3.6050 6.4662 35 1 1.4668 -3.2583 8.3656 36 1 -0.8708 -2.7699 9.1492 37 1 -3.2124 -2.3065 8.5450 38 1 -3.8725 -2.2192 6.1763 39 1 3.4464 -2.9349 -1.3781 40 1 3.7664 -4.6092 -0.8167 41 1 2.5964 -5.0002 -2.8887 42 1 1.5003 -3.6073 -2.6269 43 1 1.4078 -6.3702 -1.4206 44 1 0.0649 -5.2517 -1.7910 45 1 1.4167 -5.6420 0.7458 46 1 0.0739 -4.5236 0.3754 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715299112.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:14 Heat of formation + Delta-G solvation = 21.294988 kcal Electronic energy + Delta-G solvation = -29379.112715 eV Core-core repulsion = 25460.842452 eV Total energy + Delta-G solvation = -3918.270262 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.31826 -40.90173 -39.69100 -38.46746 -35.69765 -35.26063 -34.96528 -32.54356 -32.08569 -31.94222 -29.65487 -29.53821 -27.08789 -25.91342 -25.32947 -24.68774 -23.63722 -22.10212 -21.18723 -20.41940 -19.78236 -19.17696 -18.87131 -18.18505 -17.37695 -17.15056 -16.69961 -16.53417 -16.15333 -15.84335 -15.76416 -15.67336 -15.27598 -15.16026 -15.10332 -14.59461 -14.24733 -14.03799 -13.97899 -13.58888 -13.19614 -13.09502 -12.91208 -12.86219 -12.42835 -12.37907 -12.30199 -12.14730 -11.97655 -11.85264 -11.74801 -11.60834 -11.43826 -11.21712 -11.19062 -10.85770 -10.15567 -10.07165 -9.98441 -9.86351 -8.96226 -7.90603 -5.17201 -0.97518 -0.54395 0.84815 1.29851 1.41210 1.43242 1.48202 2.03485 2.17483 2.54378 2.61392 3.06931 3.37943 3.39280 3.51272 3.63110 3.74645 3.78579 3.81130 3.93066 3.95243 4.07590 4.10737 4.26274 4.41273 4.46826 4.58148 4.65342 4.66436 4.72468 4.82313 4.85203 4.93928 4.97008 5.04083 5.10494 5.11641 5.18965 5.20964 5.23096 5.38994 5.42650 5.50293 5.59487 5.62468 5.68367 6.17784 6.31402 6.52447 7.01054 7.14781 7.38231 8.12961 8.36732 9.31826 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009783 B = 0.003681 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.491538 B = 7605.211358 C = 8544.371967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.068 4.068 3 Si 0.953 3.047 4 H -0.276 1.276 5 H -0.298 1.298 6 H -0.291 1.291 7 C -0.217 4.217 8 H 0.068 0.932 9 N -0.712 5.712 10 C 0.182 3.818 11 C 0.121 3.879 12 N -0.678 5.678 13 C 0.555 3.445 14 O -0.566 6.566 15 C 0.123 3.877 16 C -0.144 4.144 17 C -0.024 4.024 18 C -0.154 4.154 19 C -0.038 4.038 20 C -0.161 4.161 21 C 0.155 3.845 22 N -0.517 5.517 23 C 0.267 3.733 24 N -0.473 5.473 25 C -0.127 4.127 26 C -0.109 4.109 27 C -0.111 4.111 28 C -0.119 4.119 29 H 0.246 0.754 30 H 0.373 0.627 31 H 0.079 0.921 32 H 0.041 0.959 33 H 0.411 0.589 34 H 0.166 0.834 35 H 0.203 0.797 36 H 0.194 0.806 37 H 0.193 0.807 38 H 0.194 0.806 39 H 0.049 0.951 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.041 0.959 43 H 0.084 0.916 44 H 0.058 0.942 45 H 0.078 0.922 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.010 -11.458 18.117 21.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.260 4.260 3 Si 0.784 3.216 4 H -0.202 1.202 5 H -0.224 1.224 6 H -0.218 1.218 7 C -0.349 4.349 8 H 0.086 0.914 9 N -0.351 5.351 10 C 0.091 3.909 11 C -0.004 4.004 12 N -0.326 5.326 13 C 0.339 3.661 14 O -0.446 6.446 15 C -0.032 4.032 16 C -0.165 4.165 17 C -0.050 4.050 18 C -0.160 4.160 19 C -0.065 4.065 20 C -0.181 4.181 21 C -0.022 4.022 22 N -0.227 5.227 23 C 0.029 3.971 24 N -0.186 5.186 25 C -0.167 4.167 26 C -0.146 4.146 27 C -0.149 4.149 28 C -0.157 4.157 29 H 0.055 0.945 30 H 0.206 0.794 31 H 0.097 0.903 32 H 0.060 0.940 33 H 0.247 0.753 34 H 0.183 0.817 35 H 0.220 0.780 36 H 0.211 0.789 37 H 0.210 0.790 38 H 0.211 0.789 39 H 0.068 0.932 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.060 0.940 43 H 0.103 0.897 44 H 0.077 0.923 45 H 0.097 0.903 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.580 -11.422 16.404 20.154 hybrid contribution 0.091 1.575 0.840 1.788 sum -2.489 -9.847 17.243 20.012 Atomic orbital electron populations 1.69794 1.06153 1.25445 1.59819 1.25319 0.96061 1.00183 1.04445 0.85511 0.77395 0.80909 0.77783 1.20217 1.22439 1.21792 1.19255 0.90921 0.84936 1.39833 0.91408 1.42475 1.05799 1.00298 1.86571 1.20910 0.92234 0.86394 0.91390 1.21907 0.92182 1.00090 0.86267 1.45791 1.14270 1.67679 1.04855 1.18277 0.86814 0.77642 0.83327 1.90693 1.16866 1.51633 1.85378 1.21426 0.89706 0.97385 0.94701 1.21987 1.03438 1.00292 0.90782 1.21987 0.89927 0.91424 1.01641 1.20069 0.97604 1.03280 0.95015 1.22051 0.91999 0.92323 1.00081 1.22554 0.98244 0.99434 0.97824 1.23879 0.99689 0.89437 0.89157 1.67619 1.01554 1.14064 1.39494 1.19553 0.91231 0.98235 0.88091 1.67250 1.02678 1.11083 1.37590 1.22840 0.97729 1.00272 0.95840 1.22155 0.96937 0.98192 0.97344 1.22041 0.99458 0.99671 0.93715 1.22337 0.98476 0.96546 0.98300 0.94490 0.79413 0.90339 0.94031 0.75293 0.81656 0.77985 0.78938 0.79030 0.78931 0.93225 0.90015 0.90164 0.93997 0.89720 0.92350 0.90319 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.09 13.07 21.65 0.28 -59.80 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 3 Si 0.95 48.39 29.55 68.60 2.03 50.42 16 4 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 5 H -0.30 -15.28 7.11 99.48 0.71 -14.58 16 6 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 7 C -0.22 -12.02 8.59 84.03 0.72 -11.30 16 8 H 0.07 3.71 7.13 -2.91 -0.02 3.69 16 9 N -0.71 -35.02 4.70 -298.49 -1.40 -36.43 16 10 C 0.18 7.05 0.52 4.68 0.00 7.06 16 11 C 0.12 4.81 4.29 86.38 0.37 5.18 16 12 N -0.68 -28.25 5.23 -465.48 -2.43 -30.69 16 13 C 0.55 22.48 7.81 86.94 0.68 23.16 16 14 O -0.57 -23.97 16.28 -3.69 -0.06 -24.03 16 15 C 0.12 4.45 6.75 42.30 0.29 4.74 16 16 C -0.14 -3.79 9.54 22.36 0.21 -3.58 16 17 C -0.02 -0.43 9.89 22.47 0.22 -0.21 16 18 C -0.15 -3.47 5.75 -21.20 -0.12 -3.59 16 19 C -0.04 -0.47 9.90 22.49 0.22 -0.25 16 20 C -0.16 -1.83 10.04 22.17 0.22 -1.60 16 21 C 0.15 3.05 11.14 85.10 0.95 4.00 16 22 N -0.52 -16.88 10.43 -193.76 -2.02 -18.91 16 23 C 0.27 8.97 7.62 135.12 1.03 10.00 16 24 N -0.47 -18.62 9.56 -182.98 -1.75 -20.37 16 25 C -0.13 -4.40 5.90 31.89 0.19 -4.22 16 26 C -0.11 -3.39 6.79 31.67 0.22 -3.17 16 27 C -0.11 -3.16 6.80 31.32 0.21 -2.95 16 28 C -0.12 -3.92 5.70 31.32 0.18 -3.74 16 29 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 30 H 0.37 20.19 7.50 -92.71 -0.69 19.50 16 31 H 0.08 2.77 8.08 -2.39 -0.02 2.75 16 32 H 0.04 1.85 7.52 -2.39 -0.02 1.84 16 33 H 0.41 18.42 7.37 -92.71 -0.68 17.74 16 34 H 0.17 3.84 7.60 -2.91 -0.02 3.82 16 35 H 0.20 1.39 8.06 -2.91 -0.02 1.37 16 36 H 0.19 0.43 8.06 -2.91 -0.02 0.41 16 37 H 0.19 0.32 8.06 -2.91 -0.02 0.29 16 38 H 0.19 2.43 8.06 -2.91 -0.02 2.40 16 39 H 0.05 1.97 7.19 -2.39 -0.02 1.95 16 40 H 0.08 2.39 8.06 -2.39 -0.02 2.37 16 41 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 42 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 45 H 0.08 2.32 7.80 -2.39 -0.02 2.31 16 46 H 0.05 1.84 7.76 -2.39 -0.02 1.82 16 Total: -1.00 -81.64 381.77 0.35 -81.29 By element: Atomic # 1 Polarization: 42.84 SS G_CDS: -0.35 Total: 42.49 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 6.06 Total: 16.02 kcal Atomic # 7 Polarization: -158.87 SS G_CDS: -7.32 Total: -166.19 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.06 Total: -24.03 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 2.03 Total: 50.42 kcal Total: -81.64 0.35 -81.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715299112.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.590 kcal (2) G-P(sol) polarization free energy of solvation -81.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds