Wall clock time and date at job start Tue Mar 31 2020 23:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99814 * 2 1 4 4 H 1.08993 * 109.47319 * 29.99672 * 3 2 1 5 5 C 1.50706 * 109.46831 * 269.99644 * 3 2 1 6 6 O 1.21280 * 119.99977 * 341.04877 * 5 3 2 7 7 N 1.34770 * 119.99728 * 161.04762 * 5 3 2 8 8 C 1.46501 * 120.00297 * 3.80273 * 7 5 3 9 9 C 1.52996 * 109.47192 * 95.87844 * 8 7 5 10 10 O 1.42906 * 109.46683 * 65.01796 * 9 8 7 11 11 C 1.46504 * 119.99854 * 183.80838 * 7 5 3 12 12 C 1.52998 * 109.47433 * 89.99950 * 11 7 5 13 13 N 1.46506 * 109.47053 * 180.02562 * 12 11 7 14 14 C 1.36929 * 119.99945 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00330 * 0.02562 * 14 13 12 16 16 C 1.38812 * 120.00138 * 179.97438 * 14 13 12 17 17 N 1.31618 * 119.99723 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00217 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46916 * 60.00365 * 18 16 14 20 20 H 1.48502 * 109.47100 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47376 * 300.00701 * 18 16 14 22 22 C 1.50702 * 109.47105 * 150.00009 * 3 2 1 23 23 C 1.38246 * 119.97606 * 47.82166 * 22 3 2 24 24 C 1.38195 * 120.02637 * 179.72502 * 23 22 3 25 25 C 1.38459 * 119.97447 * 0.52853 * 24 23 22 26 26 F 1.35092 * 120.02822 * 179.72663 * 25 24 23 27 27 C 1.38467 * 119.94440 * 359.74447 * 25 24 23 28 28 C 1.38194 * 119.97848 * 0.02562 * 27 25 24 29 29 H 1.08997 * 109.47167 * 300.00220 * 1 2 3 30 30 H 1.09000 * 109.46811 * 60.00316 * 1 2 3 31 31 H 1.09003 * 109.46902 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47082 * 215.88017 * 8 7 5 33 33 H 1.09000 * 109.46873 * 335.87636 * 8 7 5 34 34 H 1.09001 * 109.47205 * 185.01764 * 9 8 7 35 35 H 1.09003 * 109.47436 * 305.02270 * 9 8 7 36 36 H 0.96705 * 113.99619 * 180.02562 * 10 9 8 37 37 H 1.09007 * 109.46877 * 209.99697 * 11 7 5 38 38 H 1.08997 * 109.46846 * 329.99433 * 11 7 5 39 39 H 1.09007 * 109.46882 * 299.99744 * 12 11 7 40 40 H 1.08991 * 109.47164 * 60.00090 * 12 11 7 41 41 H 0.97006 * 119.99606 * 359.97438 * 13 12 11 42 42 H 0.97003 * 119.99864 * 180.02562 * 17 16 14 43 43 H 1.08005 * 119.98610 * 359.97438 * 23 22 3 44 44 H 1.07996 * 120.01508 * 180.29652 * 24 23 22 45 45 H 1.08002 * 120.00692 * 179.97438 * 27 25 24 46 46 H 1.07997 * 119.99213 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5137 5 6 2.2146 1.7643 -1.4209 6 8 2.2275 0.9546 -2.3237 7 7 2.3829 3.0745 -1.6883 8 6 2.4507 4.0432 -0.5914 9 6 3.9150 4.3197 -0.2448 10 8 4.5542 4.9578 -1.3523 11 6 2.4980 3.5299 -3.0759 12 6 1.1072 3.8596 -3.6216 13 7 1.2224 4.3145 -5.0095 14 6 0.0998 4.6674 -5.7097 15 1 -0.8705 4.6108 -5.2387 16 6 0.2089 5.0989 -7.0245 17 7 1.3914 5.1684 -7.5983 18 14 -1.3225 5.5797 -7.9799 19 1 -2.0045 6.7035 -7.2890 20 1 -0.9384 6.0022 -9.3508 21 1 -2.2421 4.4164 -8.0592 22 6 3.3387 1.2640 0.7104 23 6 4.2566 0.2775 0.4015 24 6 5.4774 0.2418 1.0482 25 6 5.7766 1.1880 2.0138 26 9 6.9674 1.1508 2.6506 27 6 4.8541 2.1722 2.3264 28 6 3.6359 2.2087 1.6749 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.9679 4.9717 -0.8962 33 1 1.9406 3.6385 0.2828 34 1 3.9652 4.9706 0.6280 35 1 4.4206 3.3791 -0.0262 36 1 5.4873 5.1629 -1.2030 37 1 3.1243 4.4213 -3.1150 38 1 2.9484 2.7427 -3.6805 39 1 0.4810 2.9682 -3.5826 40 1 0.6570 4.6468 -3.0171 41 1 2.0939 4.3657 -5.4324 42 1 1.4677 5.4703 -8.5170 43 1 4.0212 -0.4632 -0.3485 44 1 6.1962 -0.5260 0.8034 45 1 5.0863 2.9105 3.0796 46 1 2.9160 2.9760 1.9188 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717066888.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:06 Heat of formation + Delta-G solvation = -117.308283 kcal Electronic energy + Delta-G solvation = -30631.482438 eV Core-core repulsion = 26244.139911 eV Total energy + Delta-G solvation = -4387.342527 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.25968 -40.87952 -38.97842 -37.85537 -36.97354 -35.50096 -34.35752 -32.41658 -31.65675 -31.25271 -29.45696 -28.27319 -27.17271 -25.83902 -23.60354 -23.45325 -23.25869 -22.26594 -21.29542 -19.19316 -18.30125 -17.83595 -17.33131 -17.25438 -16.96960 -16.93631 -16.10733 -15.93140 -15.80406 -15.15493 -14.89497 -14.64306 -14.53186 -14.26330 -13.96204 -13.80365 -13.64457 -13.60389 -13.35518 -13.22487 -13.07492 -12.81249 -12.60372 -12.35268 -11.94851 -11.75352 -11.57498 -11.32072 -11.14765 -10.88536 -10.86175 -10.70932 -10.56488 -10.19285 -10.10753 -9.71394 -9.49114 -9.43681 -8.89498 -8.82095 -8.48883 -6.87903 -5.71058 -3.00121 0.62269 0.82304 2.58358 2.84372 3.06353 3.47469 3.51169 3.52769 3.58592 3.83620 4.01232 4.25431 4.30722 4.33738 4.50153 4.59517 4.65250 4.82062 4.87246 4.98819 5.04115 5.08269 5.13910 5.22632 5.27473 5.44780 5.53860 5.54681 5.58622 5.59938 5.67770 5.81415 5.84656 5.96993 6.02034 6.10984 6.28413 6.43529 6.54773 6.70703 6.81630 6.97230 7.43612 7.56129 7.73222 8.23217 8.47409 9.58026 10.15363 10.50655 11.51826 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016427 B = 0.002802 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.068372 B = 9988.866024 C =10902.757272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.116 3.884 4 H 0.092 0.908 5 C 0.490 3.510 6 O -0.510 6.510 7 N -0.593 5.593 8 C 0.102 3.898 9 C 0.051 3.949 10 O -0.560 6.560 11 C 0.109 3.891 12 C 0.144 3.856 13 N -0.729 5.729 14 C -0.238 4.238 15 H 0.069 0.931 16 C -0.014 4.014 17 N -0.933 5.933 18 Si 0.909 3.091 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.098 4.098 23 C -0.050 4.050 24 C -0.154 4.154 25 C 0.106 3.894 26 F -0.139 7.139 27 C -0.158 4.158 28 C -0.077 4.077 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.377 0.623 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.018 0.982 40 H 0.016 0.984 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.142 0.858 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.108 -6.149 26.692 28.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.270 6.270 3 C 0.054 3.946 4 H 0.109 0.891 5 C 0.275 3.725 6 O -0.384 6.384 7 N -0.328 5.328 8 C -0.022 4.022 9 C -0.027 4.027 10 O -0.365 6.365 11 C -0.013 4.013 12 C 0.016 3.984 13 N -0.373 5.373 14 C -0.369 4.369 15 H 0.087 0.913 16 C -0.210 4.210 17 N -0.581 5.581 18 Si 0.740 3.260 19 H -0.213 1.213 20 H -0.216 1.216 21 H -0.213 1.213 22 C -0.099 4.099 23 C -0.068 4.068 24 C -0.173 4.173 25 C 0.087 3.913 26 F -0.117 7.117 27 C -0.177 4.177 28 C -0.095 4.095 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.224 0.776 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.036 0.964 40 H 0.034 0.966 41 H 0.218 0.782 42 H 0.065 0.935 43 H 0.160 0.840 44 H 0.157 0.843 45 H 0.157 0.843 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.490 -6.812 25.901 27.557 hybrid contribution -0.024 0.648 -0.261 0.699 sum 6.466 -6.164 25.640 27.152 Atomic orbital electron populations 1.22934 0.80005 1.03628 1.00389 1.88002 1.20426 1.24092 1.94492 1.20795 0.93376 0.87461 0.92929 0.89070 1.21003 0.77795 0.82607 0.91069 1.90753 1.48493 1.52389 1.46778 1.47832 1.71516 1.05667 1.07743 1.21788 0.95460 0.94578 0.90391 1.22930 0.94154 0.96669 0.88992 1.86584 1.28254 1.81481 1.40205 1.21773 0.98870 1.01080 0.79532 1.20891 0.93856 0.96281 0.87409 1.42189 1.07552 1.79504 1.08097 1.19150 0.87273 1.36383 0.94112 0.91340 1.24747 0.96716 1.02439 0.97093 1.69657 1.21549 1.53507 1.13430 0.86245 0.82338 0.78260 0.79199 1.21305 1.21643 1.21279 1.19408 0.94914 0.97479 0.98057 1.20991 0.91241 0.97007 0.97569 1.21216 0.98689 0.99981 0.97436 1.17783 0.81992 0.97261 0.94310 1.91512 1.43739 1.96101 1.80393 1.21044 0.94020 0.99786 1.02861 1.20870 0.96459 0.98027 0.94154 0.93726 0.93231 0.88823 0.88855 0.89467 0.92876 0.92746 0.77629 0.88946 0.90068 0.96447 0.96636 0.78184 0.93451 0.84003 0.84328 0.84258 0.84596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.81 101.05 1.09 1.35 16 2 O -0.35 -4.34 9.57 -54.39 -0.52 -4.86 16 3 C 0.12 1.28 1.99 -29.03 -0.06 1.22 16 4 H 0.09 0.74 5.93 -51.93 -0.31 0.43 16 5 C 0.49 7.44 6.78 -10.99 -0.07 7.37 16 6 O -0.51 -10.13 16.16 -13.60 -0.22 -10.35 16 7 N -0.59 -8.55 2.47 -173.68 -0.43 -8.98 16 8 C 0.10 1.02 5.35 -4.04 -0.02 1.00 16 9 C 0.05 0.45 6.00 37.16 0.22 0.67 16 10 O -0.56 -6.20 11.96 -35.23 -0.42 -6.62 16 11 C 0.11 2.02 5.37 -4.04 -0.02 2.00 16 12 C 0.14 3.16 6.58 -4.04 -0.03 3.13 16 13 N -0.73 -19.65 5.60 -59.91 -0.34 -19.99 16 14 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 15 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 16 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 17 N -0.93 -29.09 13.06 55.49 0.72 -28.37 16 18 Si 0.91 23.01 29.55 -169.99 -5.02 17.99 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 22 C -0.10 -0.94 3.94 -104.62 -0.41 -1.35 16 23 C -0.05 -0.52 9.28 -39.59 -0.37 -0.88 16 24 C -0.15 -1.39 10.03 -39.52 -0.40 -1.78 16 25 C 0.11 0.91 7.30 -39.42 -0.29 0.63 16 26 F -0.14 -1.31 17.27 2.25 0.04 -1.27 16 27 C -0.16 -1.09 9.87 -39.51 -0.39 -1.48 16 28 C -0.08 -0.53 5.95 -39.59 -0.24 -0.76 16 29 H 0.04 0.32 8.08 -51.93 -0.42 -0.10 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.00 8.12 -51.93 -0.42 0.58 16 33 H 0.09 0.59 4.30 -51.93 -0.22 0.36 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.05 0.49 5.13 -51.93 -0.27 0.22 16 36 H 0.38 2.61 9.12 45.56 0.42 3.03 16 37 H 0.09 1.70 6.60 -51.93 -0.34 1.36 16 38 H 0.08 1.69 7.37 -51.93 -0.38 1.30 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.38 10.84 7.67 -40.82 -0.31 10.53 16 42 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 43 H 0.14 1.62 8.00 -52.48 -0.42 1.20 16 44 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 45 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 46 H 0.14 0.55 6.71 -52.49 -0.35 0.20 16 LS Contribution 381.69 15.07 5.75 5.75 Total: -1.00 -37.30 381.69 -7.19 -44.49 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -5.54 Total: 8.72 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -1.22 Total: 3.49 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: -0.04 Total: -57.34 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -1.16 Total: -21.84 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.30 -7.19 -44.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717066888.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.814 kcal (2) G-P(sol) polarization free energy of solvation -37.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds