Wall clock time and date at job start Tue Mar 31 2020 23:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99814 * 2 1 4 4 H 1.08993 * 109.47319 * 29.99672 * 3 2 1 5 5 C 1.50706 * 109.46831 * 269.99644 * 3 2 1 6 6 O 1.21280 * 119.99977 * 341.04877 * 5 3 2 7 7 N 1.34770 * 119.99728 * 161.04762 * 5 3 2 8 8 C 1.46501 * 120.00297 * 3.80273 * 7 5 3 9 9 C 1.52996 * 109.47192 * 95.87844 * 8 7 5 10 10 O 1.42906 * 109.46683 * 65.01796 * 9 8 7 11 11 C 1.46504 * 119.99854 * 183.80838 * 7 5 3 12 12 C 1.52998 * 109.47433 * 89.99950 * 11 7 5 13 13 N 1.46506 * 109.47053 * 180.02562 * 12 11 7 14 14 C 1.36929 * 119.99945 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00330 * 0.02562 * 14 13 12 16 16 C 1.38812 * 120.00138 * 179.97438 * 14 13 12 17 17 N 1.31618 * 119.99723 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00217 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46916 * 60.00365 * 18 16 14 20 20 H 1.48502 * 109.47100 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47376 * 300.00701 * 18 16 14 22 22 C 1.50702 * 109.47105 * 150.00009 * 3 2 1 23 23 C 1.38246 * 119.97606 * 47.82166 * 22 3 2 24 24 C 1.38195 * 120.02637 * 179.72502 * 23 22 3 25 25 C 1.38459 * 119.97447 * 0.52853 * 24 23 22 26 26 F 1.35092 * 120.02822 * 179.72663 * 25 24 23 27 27 C 1.38467 * 119.94440 * 359.74447 * 25 24 23 28 28 C 1.38194 * 119.97848 * 0.02562 * 27 25 24 29 29 H 1.08997 * 109.47167 * 300.00220 * 1 2 3 30 30 H 1.09000 * 109.46811 * 60.00316 * 1 2 3 31 31 H 1.09003 * 109.46902 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47082 * 215.88017 * 8 7 5 33 33 H 1.09000 * 109.46873 * 335.87636 * 8 7 5 34 34 H 1.09001 * 109.47205 * 185.01764 * 9 8 7 35 35 H 1.09003 * 109.47436 * 305.02270 * 9 8 7 36 36 H 0.96705 * 113.99619 * 180.02562 * 10 9 8 37 37 H 1.09007 * 109.46877 * 209.99697 * 11 7 5 38 38 H 1.08997 * 109.46846 * 329.99433 * 11 7 5 39 39 H 1.09007 * 109.46882 * 299.99744 * 12 11 7 40 40 H 1.08991 * 109.47164 * 60.00090 * 12 11 7 41 41 H 0.97006 * 119.99606 * 359.97438 * 13 12 11 42 42 H 0.97003 * 119.99864 * 180.02562 * 17 16 14 43 43 H 1.08005 * 119.98610 * 359.97438 * 23 22 3 44 44 H 1.07996 * 120.01508 * 180.29652 * 24 23 22 45 45 H 1.08002 * 120.00692 * 179.97438 * 27 25 24 46 46 H 1.07997 * 119.99213 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5137 5 6 2.2146 1.7643 -1.4209 6 8 2.2275 0.9546 -2.3237 7 7 2.3829 3.0745 -1.6883 8 6 2.4507 4.0432 -0.5914 9 6 3.9150 4.3197 -0.2448 10 8 4.5542 4.9578 -1.3523 11 6 2.4980 3.5299 -3.0759 12 6 1.1072 3.8596 -3.6216 13 7 1.2224 4.3145 -5.0095 14 6 0.0998 4.6674 -5.7097 15 1 -0.8705 4.6108 -5.2387 16 6 0.2089 5.0989 -7.0245 17 7 1.3914 5.1684 -7.5983 18 14 -1.3225 5.5797 -7.9799 19 1 -2.0045 6.7035 -7.2890 20 1 -0.9384 6.0022 -9.3508 21 1 -2.2421 4.4164 -8.0592 22 6 3.3387 1.2640 0.7104 23 6 4.2566 0.2775 0.4015 24 6 5.4774 0.2418 1.0482 25 6 5.7766 1.1880 2.0138 26 9 6.9674 1.1508 2.6506 27 6 4.8541 2.1722 2.3264 28 6 3.6359 2.2087 1.6749 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.9679 4.9717 -0.8962 33 1 1.9406 3.6385 0.2828 34 1 3.9652 4.9706 0.6280 35 1 4.4206 3.3791 -0.0262 36 1 5.4873 5.1629 -1.2030 37 1 3.1243 4.4213 -3.1150 38 1 2.9484 2.7427 -3.6805 39 1 0.4810 2.9682 -3.5826 40 1 0.6570 4.6468 -3.0171 41 1 2.0939 4.3657 -5.4324 42 1 1.4677 5.4703 -8.5170 43 1 4.0212 -0.4632 -0.3485 44 1 6.1962 -0.5260 0.8034 45 1 5.0863 2.9105 3.0796 46 1 2.9160 2.9760 1.9188 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717066888.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:05 Heat of formation + Delta-G solvation = -145.342733 kcal Electronic energy + Delta-G solvation = -30632.698103 eV Core-core repulsion = 26244.139911 eV Total energy + Delta-G solvation = -4388.558192 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.93262 -41.84283 -39.84108 -38.74662 -37.88609 -37.02193 -35.93120 -33.73820 -32.77926 -32.26563 -30.64971 -29.46687 -28.17211 -26.97253 -25.40613 -24.09390 -24.07286 -23.49548 -22.61739 -20.34389 -19.25419 -19.01035 -18.59496 -18.13694 -18.07391 -17.73964 -17.11281 -16.86447 -16.60414 -16.41666 -16.14581 -15.76046 -15.57386 -15.38296 -15.08079 -15.07094 -14.92249 -14.59572 -14.51350 -14.34451 -14.19177 -13.85536 -13.39004 -13.27060 -13.09742 -12.91637 -12.84468 -12.62848 -12.51099 -12.37100 -12.18007 -12.13927 -11.92698 -11.89155 -11.68415 -10.98938 -10.89212 -10.48103 -10.05067 -9.77988 -9.60669 -9.08471 -7.98114 -5.29714 -0.04290 0.21723 1.44221 1.46082 1.49638 1.55694 1.76027 2.38091 2.54489 2.78985 3.20792 3.34118 3.34571 3.40509 3.53830 3.67090 3.87029 3.95369 4.06306 4.09120 4.15190 4.24377 4.30707 4.35830 4.39770 4.42740 4.50009 4.50646 4.59311 4.66122 4.81585 4.85913 4.88747 4.92677 5.04465 5.06570 5.09015 5.17251 5.36182 5.40060 5.49773 5.81064 5.91231 6.22448 6.36497 6.97441 7.07570 7.28148 7.99885 8.25548 9.25304 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016427 B = 0.002802 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.068372 B = 9988.866024 C =10902.757272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.375 6.375 3 C 0.125 3.875 4 H 0.132 0.868 5 C 0.483 3.517 6 O -0.572 6.572 7 N -0.590 5.590 8 C 0.089 3.911 9 C 0.051 3.949 10 O -0.593 6.593 11 C 0.129 3.871 12 C 0.152 3.848 13 N -0.743 5.743 14 C -0.253 4.253 15 H 0.075 0.925 16 C -0.075 4.075 17 N -0.969 5.969 18 Si 0.981 3.019 19 H -0.272 1.272 20 H -0.292 1.292 21 H -0.279 1.279 22 C -0.108 4.108 23 C -0.071 4.071 24 C -0.163 4.163 25 C 0.095 3.905 26 F -0.145 7.145 27 C -0.144 4.144 28 C -0.063 4.063 29 H 0.079 0.921 30 H 0.027 0.973 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.129 0.871 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.392 0.608 37 H 0.095 0.905 38 H 0.047 0.953 39 H -0.002 1.002 40 H 0.032 0.968 41 H 0.374 0.626 42 H 0.254 0.746 43 H 0.115 0.885 44 H 0.141 0.859 45 H 0.172 0.828 46 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.059 -4.290 30.079 30.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.293 6.293 3 C 0.064 3.936 4 H 0.149 0.851 5 C 0.271 3.729 6 O -0.450 6.450 7 N -0.323 5.323 8 C -0.033 4.033 9 C -0.028 4.028 10 O -0.401 6.401 11 C 0.005 3.995 12 C 0.024 3.976 13 N -0.386 5.386 14 C -0.384 4.384 15 H 0.093 0.907 16 C -0.267 4.267 17 N -0.619 5.619 18 Si 0.808 3.192 19 H -0.197 1.197 20 H -0.218 1.218 21 H -0.206 1.206 22 C -0.109 4.109 23 C -0.090 4.090 24 C -0.182 4.182 25 C 0.076 3.924 26 F -0.123 7.123 27 C -0.162 4.162 28 C -0.081 4.081 29 H 0.098 0.902 30 H 0.045 0.955 31 H 0.121 0.879 32 H 0.109 0.891 33 H 0.147 0.853 34 H 0.114 0.886 35 H 0.070 0.930 36 H 0.242 0.758 37 H 0.113 0.887 38 H 0.066 0.934 39 H 0.016 0.984 40 H 0.050 0.950 41 H 0.206 0.794 42 H 0.062 0.938 43 H 0.134 0.866 44 H 0.159 0.841 45 H 0.190 0.810 46 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 5.440 -4.938 29.371 30.276 hybrid contribution 0.346 0.032 -1.250 1.297 sum 5.786 -4.906 28.121 29.126 Atomic orbital electron populations 1.23107 0.78901 1.04587 1.00899 1.87999 1.21818 1.25169 1.94291 1.20875 0.95027 0.87744 0.89992 0.85080 1.21973 0.76167 0.82110 0.92624 1.90719 1.51195 1.54043 1.49072 1.47892 1.70818 1.06543 1.07023 1.22277 0.97352 0.93534 0.90097 1.23053 0.92629 0.97401 0.89670 1.86532 1.29812 1.81798 1.41941 1.21256 0.96370 0.99898 0.81927 1.20931 0.95728 0.95467 0.85448 1.42400 1.06610 1.79652 1.09971 1.19570 0.88134 1.35941 0.94759 0.90710 1.25676 1.00023 1.02854 0.98144 1.69831 1.23852 1.54662 1.13563 0.85119 0.78450 0.78262 0.77347 1.19745 1.21782 1.20560 1.19428 0.93947 0.98375 0.99164 1.20872 0.92450 0.97635 0.97996 1.21241 0.98386 1.00679 0.97867 1.17987 0.82289 0.97828 0.94285 1.91500 1.44231 1.96179 1.80439 1.21391 0.93059 0.99196 1.02595 1.21233 0.97051 0.97504 0.92304 0.90224 0.95463 0.87947 0.89142 0.85307 0.88587 0.93001 0.75826 0.88695 0.93418 0.98358 0.95036 0.79438 0.93770 0.86640 0.84091 0.81047 0.80494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.81 113.37 1.23 1.61 16 2 O -0.38 -9.07 9.57 -130.66 -1.25 -10.32 16 3 C 0.12 2.54 1.99 29.10 0.06 2.60 16 4 H 0.13 1.53 5.93 -2.39 -0.01 1.52 16 5 C 0.48 14.81 6.78 87.66 0.59 15.41 16 6 O -0.57 -24.24 16.16 15.29 0.25 -23.99 16 7 N -0.59 -16.67 2.47 -821.81 -2.03 -18.70 16 8 C 0.09 1.50 5.35 86.38 0.46 1.96 16 9 C 0.05 0.69 6.00 71.98 0.43 1.12 16 10 O -0.59 -12.01 11.96 -148.98 -1.78 -13.79 16 11 C 0.13 4.93 5.37 86.38 0.46 5.39 16 12 C 0.15 6.81 6.58 86.38 0.57 7.37 16 13 N -0.74 -41.22 5.60 -343.45 -1.92 -43.14 16 14 C -0.25 -14.96 9.99 84.03 0.84 -14.12 16 15 H 0.07 4.23 7.83 -2.91 -0.02 4.21 16 16 C -0.07 -4.47 5.50 84.86 0.47 -4.00 16 17 N -0.97 -61.64 13.06 21.65 0.28 -61.36 16 18 Si 0.98 47.46 29.55 68.60 2.03 49.49 16 19 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 20 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 21 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 22 C -0.11 -1.85 3.94 -19.86 -0.08 -1.93 16 23 C -0.07 -1.49 9.28 22.26 0.21 -1.28 16 24 C -0.16 -2.91 10.03 22.31 0.22 -2.68 16 25 C 0.10 1.45 7.30 22.38 0.16 1.61 16 26 F -0.14 -2.47 17.27 44.97 0.78 -1.69 16 27 C -0.14 -1.35 9.87 22.31 0.22 -1.13 16 28 C -0.06 -0.57 5.95 22.26 0.13 -0.44 16 29 H 0.08 0.88 8.08 -2.39 -0.02 0.86 16 30 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.09 1.64 8.12 -2.39 -0.02 1.62 16 33 H 0.13 1.01 4.30 -2.39 -0.01 1.00 16 34 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.05 0.75 5.13 -2.39 -0.01 0.74 16 36 H 0.39 4.74 9.12 -74.05 -0.68 4.07 16 37 H 0.09 3.57 6.60 -2.38 -0.02 3.55 16 38 H 0.05 2.12 7.37 -2.39 -0.02 2.11 16 39 H 0.00 -0.08 8.14 -2.38 -0.02 -0.09 16 40 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.37 21.97 7.67 -92.70 -0.71 21.26 16 42 H 0.25 15.51 8.31 -92.71 -0.77 14.74 16 43 H 0.12 2.95 8.00 -2.91 -0.02 2.93 16 44 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 45 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 46 H 0.18 0.13 6.71 -2.91 -0.02 0.11 16 Total: -1.00 -86.08 381.69 1.98 -84.11 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: -0.35 Total: 27.89 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 5.98 Total: 11.49 kcal Atomic # 7 Polarization: -119.53 SS G_CDS: -3.67 Total: -123.19 kcal Atomic # 8 Polarization: -45.32 SS G_CDS: -2.78 Total: -48.10 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.78 Total: -1.69 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -86.08 1.98 -84.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717066888.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.237 kcal (2) G-P(sol) polarization free energy of solvation -86.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds