Wall clock time and date at job start Tue Mar 31 2020 23:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 119.99748 * 2 1 4 4 H 1.48491 * 109.47579 * 270.00218 * 3 2 1 5 5 H 1.48503 * 109.46995 * 30.00610 * 3 2 1 6 6 H 1.48504 * 109.46919 * 150.00160 * 3 2 1 7 7 C 1.38813 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99829 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99982 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47227 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.01709 * 306.39356 * 11 10 9 13 13 C 1.54265 * 110.03356 * 67.82917 * 11 10 9 14 14 C 1.55029 * 104.27836 * 142.80525 * 13 11 10 15 15 C 1.54896 * 102.68125 * 322.23475 * 14 13 11 16 16 H 1.09002 * 110.48521 * 279.02509 * 15 14 13 17 17 N 1.46502 * 110.48179 * 156.51901 * 15 14 13 18 18 C 1.34778 * 119.99854 * 88.24379 * 17 15 14 19 19 O 1.21490 * 120.00360 * 359.97438 * 18 17 15 20 20 C 1.48356 * 119.99708 * 179.97438 * 18 17 15 21 21 C 1.40167 * 119.20157 * 179.97438 * 20 18 17 22 22 C 1.36628 * 119.70475 * 179.69548 * 21 20 18 23 23 C 1.40590 * 118.20943 * 0.28492 * 22 21 20 24 24 C 1.40732 * 121.37737 * 179.97438 * 23 22 21 25 25 C 1.36591 * 118.13346 * 180.02562 * 24 23 22 26 26 C 1.39428 * 119.84556 * 359.97438 * 25 24 23 27 27 N 1.31017 * 121.83808 * 0.02562 * 26 25 24 28 28 C 1.33858 * 121.42769 * 359.97438 * 27 26 25 29 29 N 1.31886 * 119.20652 * 0.27790 * 20 18 17 30 30 C 1.53869 * 110.03388 * 185.00304 * 11 10 9 31 31 H 0.96993 * 119.99975 * 0.02562 * 1 2 3 32 32 H 0.97002 * 120.00433 * 0.02562 * 9 7 2 33 33 H 1.08996 * 109.47002 * 59.99982 * 10 9 7 34 34 H 1.08997 * 109.46691 * 300.00028 * 10 9 7 35 35 H 1.09002 * 110.48963 * 261.57330 * 13 11 10 36 36 H 1.08995 * 110.48532 * 24.09032 * 13 11 10 37 37 H 1.08999 * 110.87686 * 203.90289 * 14 13 11 38 38 H 1.09002 * 110.70314 * 80.48518 * 14 13 11 39 39 H 0.97002 * 120.00334 * 268.23556 * 17 15 14 40 40 H 1.08002 * 120.14976 * 359.97438 * 21 20 18 41 41 H 1.07997 * 120.89255 * 180.25515 * 22 21 20 42 42 H 1.08001 * 120.93511 * 359.97438 * 24 23 22 43 43 H 1.08000 * 120.07739 * 179.97438 * 25 24 23 44 44 H 1.07996 * 119.08268 * 179.97438 * 26 25 24 45 45 H 1.08998 * 110.03677 * 121.42506 * 30 11 10 46 46 H 1.09005 * 110.03387 * 359.97438 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0016 10 6 2.0582 -3.6568 -0.0016 11 6 1.0640 -4.8197 -0.0035 12 1 0.3587 -4.7090 0.8201 13 6 0.3064 -4.8651 -1.3466 14 6 0.1449 -6.3781 -1.6435 15 6 1.4892 -6.9672 -1.1484 16 1 2.2664 -6.8284 -1.9000 17 7 1.3381 -8.3882 -0.8253 18 6 1.5158 -9.3196 -1.7831 19 8 1.8007 -8.9809 -2.9145 20 6 1.3634 -10.7586 -1.4557 21 6 1.5513 -11.7131 -2.4647 22 6 1.4196 -13.0414 -2.1731 23 6 1.0902 -13.4030 -0.8551 24 6 0.9376 -14.7512 -0.4815 25 6 0.6163 -15.0273 0.8171 26 6 0.4502 -13.9845 1.7276 27 7 0.5931 -12.7306 1.3759 28 6 0.9074 -12.3893 0.1202 29 7 1.0484 -11.1084 -0.2237 30 6 1.8159 -6.1563 0.1225 31 1 -0.4850 0.8400 -0.0004 32 1 0.3557 -2.3881 -0.0023 33 1 2.6841 -3.7149 0.8888 34 1 2.6855 -3.7141 -0.8911 35 1 -0.6690 -4.3882 -1.2507 36 1 0.8905 -4.3829 -2.1304 37 1 0.0167 -6.5528 -2.7118 38 1 -0.6901 -6.7944 -1.0800 39 1 1.1104 -8.6586 0.0780 40 1 1.8036 -11.4003 -3.4672 41 1 1.5643 -13.7933 -2.9348 42 1 1.0700 -15.5452 -1.2015 43 1 0.4912 -16.0510 1.1378 44 1 0.1958 -14.2169 2.7511 45 1 1.4751 -6.6946 1.0069 46 1 2.8892 -5.9765 0.1846 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717870932.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:43 Heat of formation + Delta-G solvation = 40.070253 kcal Electronic energy + Delta-G solvation = -27625.485542 eV Core-core repulsion = 23708.029436 eV Total energy + Delta-G solvation = -3917.456106 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.77506 -40.11363 -38.44377 -37.61911 -34.95724 -34.59814 -33.39191 -31.71748 -31.47619 -30.89547 -28.72864 -27.86773 -26.00814 -24.80528 -24.20888 -23.15569 -22.11121 -21.65901 -20.43168 -19.57772 -19.20664 -18.50679 -17.71084 -16.95582 -16.61910 -16.40053 -15.79710 -15.43853 -14.99627 -14.84694 -14.75222 -14.65199 -14.23985 -14.05730 -13.68574 -13.58367 -13.26574 -13.18322 -12.75629 -12.61500 -12.45759 -12.13069 -11.69150 -11.64525 -11.37830 -11.23932 -11.00777 -10.81263 -10.65276 -10.57597 -10.35680 -10.27799 -10.09160 -9.85355 -9.62234 -9.56291 -9.52655 -9.44932 -9.06560 -8.80208 -6.84290 -5.70360 -2.98210 -0.48517 -0.04525 1.31177 1.89332 2.74872 2.83522 3.17009 3.47956 3.52843 3.54589 3.62930 3.82368 4.03503 4.06882 4.20528 4.30786 4.48962 4.63911 4.72440 4.75713 4.77857 4.87238 5.08454 5.12792 5.25127 5.31734 5.54797 5.58312 5.60594 5.62036 5.65870 5.68229 5.71700 5.93684 5.98248 6.00461 6.15875 6.22655 6.33475 6.36050 6.51600 6.61148 6.70742 6.74957 6.88696 7.01492 7.32549 7.56788 7.76019 7.96496 8.49017 9.60018 10.19492 10.54318 11.52684 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028650 B = 0.001728 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.086857 B =16201.742279 C =16745.212095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.159 3.841 11 C -0.096 4.096 12 H 0.075 0.925 13 C -0.110 4.110 14 C -0.133 4.133 15 C 0.136 3.864 16 H 0.097 0.903 17 N -0.696 5.696 18 C 0.566 3.434 19 O -0.526 6.526 20 C 0.149 3.851 21 C -0.129 4.129 22 C -0.046 4.046 23 C -0.143 4.143 24 C -0.046 4.046 25 C -0.173 4.173 26 C 0.160 3.840 27 N -0.458 5.458 28 C 0.302 3.698 29 N -0.435 5.435 30 C -0.121 4.121 31 H 0.254 0.746 32 H 0.384 0.616 33 H 0.017 0.983 34 H 0.020 0.980 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.412 0.588 40 H 0.158 0.842 41 H 0.151 0.849 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.170 0.830 45 H 0.068 0.932 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.713 -36.927 -1.391 36.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.031 3.969 11 C -0.115 4.115 12 H 0.093 0.907 13 C -0.148 4.148 14 C -0.172 4.172 15 C 0.033 3.967 16 H 0.115 0.885 17 N -0.346 5.346 18 C 0.349 3.651 19 O -0.401 6.401 20 C -0.008 4.008 21 C -0.150 4.150 22 C -0.073 4.073 23 C -0.149 4.149 24 C -0.073 4.073 25 C -0.193 4.193 26 C -0.017 4.017 27 N -0.167 5.167 28 C 0.063 3.937 29 N -0.148 5.148 30 C -0.160 4.160 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.035 0.965 34 H 0.038 0.962 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.248 0.752 40 H 0.176 0.824 41 H 0.169 0.831 42 H 0.163 0.837 43 H 0.164 0.836 44 H 0.187 0.813 45 H 0.087 0.913 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.832 -35.136 -0.933 35.158 hybrid contribution 0.225 -0.588 -0.691 0.935 sum 1.057 -35.724 -1.624 35.777 Atomic orbital electron populations 1.69663 1.05074 1.25526 1.58052 1.24733 0.95524 0.97638 1.03256 0.86192 0.78625 0.83930 0.77477 1.21783 1.21831 1.20827 1.19247 0.91034 0.84282 1.42274 0.91256 1.42357 1.05888 0.99962 1.89388 1.20800 0.93057 0.85360 0.97652 1.21881 0.97732 0.93692 0.98183 0.90685 1.22337 1.01076 0.94058 0.97329 1.22928 0.96488 0.96618 1.01171 1.22088 0.98757 0.77691 0.98207 0.88456 1.46054 1.68778 1.06428 1.13341 1.17846 0.77955 0.83989 0.85265 1.90810 1.47882 1.80996 1.20409 1.21547 0.95121 0.95338 0.88826 1.21875 0.99024 0.92533 1.01566 1.21489 0.94321 0.96651 0.94836 1.19745 1.03237 0.95795 0.96076 1.21522 0.94063 0.94757 0.96909 1.22093 1.01296 1.01665 0.94262 1.23190 0.91410 0.86712 1.00436 1.67658 1.12010 1.20715 1.16322 1.19195 0.96668 0.88285 0.89532 1.67370 1.10672 1.18381 1.18378 1.22407 1.01516 0.95816 0.96234 0.93603 0.78255 0.96519 0.96231 0.91178 0.90821 0.91315 0.91443 0.75164 0.82433 0.83143 0.83707 0.83649 0.81293 0.91291 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.76 13.06 55.49 0.72 -28.04 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 4 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -18.92 5.45 -59.91 -0.33 -19.24 16 10 C 0.16 3.26 5.31 -4.04 -0.02 3.24 16 11 C -0.10 -1.56 2.96 -89.51 -0.27 -1.83 16 12 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 13 C -0.11 -1.76 6.09 -25.00 -0.15 -1.91 16 14 C -0.13 -1.83 6.59 -24.66 -0.16 -1.99 16 15 C 0.14 1.79 3.18 -66.27 -0.21 1.58 16 16 H 0.10 1.39 7.61 -51.93 -0.40 0.99 16 17 N -0.70 -8.43 5.16 -52.97 -0.27 -8.71 16 18 C 0.57 7.29 7.81 -12.09 -0.09 7.20 16 19 O -0.53 -7.99 15.96 5.37 0.09 -7.90 16 20 C 0.15 1.67 6.75 -82.96 -0.56 1.11 16 21 C -0.13 -1.11 9.54 -39.44 -0.38 -1.48 16 22 C -0.05 -0.29 9.89 -39.28 -0.39 -0.68 16 23 C -0.14 -1.11 5.75 -106.69 -0.61 -1.72 16 24 C -0.05 -0.21 9.90 -39.23 -0.39 -0.60 16 25 C -0.17 -0.66 10.04 -39.73 -0.40 -1.06 16 26 C 0.16 0.95 11.14 -17.46 -0.19 0.75 16 27 N -0.46 -4.71 10.43 -12.60 -0.13 -4.85 16 28 C 0.30 3.27 7.62 -157.91 -1.20 2.06 16 29 N -0.44 -5.20 9.56 -9.19 -0.09 -5.28 16 30 C -0.12 -1.60 6.19 -25.62 -0.16 -1.76 16 31 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 32 H 0.38 10.37 7.55 -40.82 -0.31 10.07 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.02 0.41 8.00 -51.93 -0.42 0.00 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.07 1.28 7.76 -51.93 -0.40 0.88 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.41 4.60 7.65 -40.82 -0.31 4.29 16 40 H 0.16 1.19 7.60 -52.49 -0.40 0.79 16 41 H 0.15 0.39 8.06 -52.49 -0.42 -0.04 16 42 H 0.15 0.19 8.06 -52.49 -0.42 -0.24 16 43 H 0.15 0.07 8.06 -52.49 -0.42 -0.35 16 44 H 0.17 0.44 8.06 -52.49 -0.42 0.02 16 45 H 0.07 0.82 7.72 -51.93 -0.40 0.41 16 46 H 0.07 0.98 7.67 -51.93 -0.40 0.58 16 LS Contribution 385.37 15.07 5.81 5.81 Total: -1.00 -35.67 385.37 -11.04 -46.71 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -6.38 Total: 8.24 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -5.43 Total: -4.60 kcal Atomic # 7 Polarization: -66.02 SS G_CDS: -0.09 Total: -66.12 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: 0.09 Total: -7.90 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.67 -11.04 -46.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717870932.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.781 kcal (2) G-P(sol) polarization free energy of solvation -35.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds