Wall clock time and date at job start Tue Mar 31 2020 23:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 119.99748 * 2 1 4 4 H 1.48491 * 109.47579 * 270.00218 * 3 2 1 5 5 H 1.48503 * 109.46995 * 30.00610 * 3 2 1 6 6 H 1.48504 * 109.46919 * 150.00160 * 3 2 1 7 7 C 1.38813 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99829 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99982 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47227 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.01709 * 306.39356 * 11 10 9 13 13 C 1.54265 * 110.03356 * 67.82917 * 11 10 9 14 14 C 1.55029 * 104.27836 * 142.80525 * 13 11 10 15 15 C 1.54896 * 102.68125 * 322.23475 * 14 13 11 16 16 H 1.09002 * 110.48521 * 279.02509 * 15 14 13 17 17 N 1.46502 * 110.48179 * 156.51901 * 15 14 13 18 18 C 1.34778 * 119.99854 * 88.24379 * 17 15 14 19 19 O 1.21490 * 120.00360 * 359.97438 * 18 17 15 20 20 C 1.48356 * 119.99708 * 179.97438 * 18 17 15 21 21 C 1.40167 * 119.20157 * 179.97438 * 20 18 17 22 22 C 1.36628 * 119.70475 * 179.69548 * 21 20 18 23 23 C 1.40590 * 118.20943 * 0.28492 * 22 21 20 24 24 C 1.40732 * 121.37737 * 179.97438 * 23 22 21 25 25 C 1.36591 * 118.13346 * 180.02562 * 24 23 22 26 26 C 1.39428 * 119.84556 * 359.97438 * 25 24 23 27 27 N 1.31017 * 121.83808 * 0.02562 * 26 25 24 28 28 C 1.33858 * 121.42769 * 359.97438 * 27 26 25 29 29 N 1.31886 * 119.20652 * 0.27790 * 20 18 17 30 30 C 1.53869 * 110.03388 * 185.00304 * 11 10 9 31 31 H 0.96993 * 119.99975 * 0.02562 * 1 2 3 32 32 H 0.97002 * 120.00433 * 0.02562 * 9 7 2 33 33 H 1.08996 * 109.47002 * 59.99982 * 10 9 7 34 34 H 1.08997 * 109.46691 * 300.00028 * 10 9 7 35 35 H 1.09002 * 110.48963 * 261.57330 * 13 11 10 36 36 H 1.08995 * 110.48532 * 24.09032 * 13 11 10 37 37 H 1.08999 * 110.87686 * 203.90289 * 14 13 11 38 38 H 1.09002 * 110.70314 * 80.48518 * 14 13 11 39 39 H 0.97002 * 120.00334 * 268.23556 * 17 15 14 40 40 H 1.08002 * 120.14976 * 359.97438 * 21 20 18 41 41 H 1.07997 * 120.89255 * 180.25515 * 22 21 20 42 42 H 1.08001 * 120.93511 * 359.97438 * 24 23 22 43 43 H 1.08000 * 120.07739 * 179.97438 * 25 24 23 44 44 H 1.07996 * 119.08268 * 179.97438 * 26 25 24 45 45 H 1.08998 * 110.03677 * 121.42506 * 30 11 10 46 46 H 1.09005 * 110.03387 * 359.97438 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0016 10 6 2.0582 -3.6568 -0.0016 11 6 1.0640 -4.8197 -0.0035 12 1 0.3587 -4.7090 0.8201 13 6 0.3064 -4.8651 -1.3466 14 6 0.1449 -6.3781 -1.6435 15 6 1.4892 -6.9672 -1.1484 16 1 2.2664 -6.8284 -1.9000 17 7 1.3381 -8.3882 -0.8253 18 6 1.5158 -9.3196 -1.7831 19 8 1.8007 -8.9809 -2.9145 20 6 1.3634 -10.7586 -1.4557 21 6 1.5513 -11.7131 -2.4647 22 6 1.4196 -13.0414 -2.1731 23 6 1.0902 -13.4030 -0.8551 24 6 0.9376 -14.7512 -0.4815 25 6 0.6163 -15.0273 0.8171 26 6 0.4502 -13.9845 1.7276 27 7 0.5931 -12.7306 1.3759 28 6 0.9074 -12.3893 0.1202 29 7 1.0484 -11.1084 -0.2237 30 6 1.8159 -6.1563 0.1225 31 1 -0.4850 0.8400 -0.0004 32 1 0.3557 -2.3881 -0.0023 33 1 2.6841 -3.7149 0.8888 34 1 2.6855 -3.7141 -0.8911 35 1 -0.6690 -4.3882 -1.2507 36 1 0.8905 -4.3829 -2.1304 37 1 0.0167 -6.5528 -2.7118 38 1 -0.6901 -6.7944 -1.0800 39 1 1.1104 -8.6586 0.0780 40 1 1.8036 -11.4003 -3.4672 41 1 1.5643 -13.7933 -2.9348 42 1 1.0700 -15.5452 -1.2015 43 1 0.4912 -16.0510 1.1378 44 1 0.1958 -14.2169 2.7511 45 1 1.4751 -6.6946 1.0069 46 1 2.8892 -5.9765 0.1846 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717870932.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:42 Heat of formation + Delta-G solvation = 15.808259 kcal Electronic energy + Delta-G solvation = -27626.537621 eV Core-core repulsion = 23708.029436 eV Total energy + Delta-G solvation = -3918.508185 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.35461 -41.05894 -39.47962 -38.45258 -36.50179 -35.32591 -34.75319 -32.99304 -32.12905 -31.98803 -30.17197 -29.12227 -26.87336 -26.01457 -25.22736 -23.93550 -23.66440 -22.53933 -21.54279 -20.88465 -19.91525 -19.30601 -19.02256 -18.20759 -17.46807 -17.27367 -16.71889 -16.58816 -16.06246 -15.94533 -15.70748 -15.55010 -15.21581 -15.12344 -15.07420 -14.69031 -14.44805 -14.27335 -13.99517 -13.58595 -13.32026 -13.21184 -12.89152 -12.86825 -12.78214 -12.48871 -12.16406 -12.15769 -12.12841 -11.96293 -11.77595 -11.74429 -11.58836 -11.38043 -11.23439 -10.91083 -10.23061 -10.13827 -10.02647 -9.90785 -8.97983 -7.94369 -5.22771 -1.02172 -0.56440 0.81184 1.25642 1.46812 1.49013 1.57370 1.87491 2.09578 2.51922 2.56790 3.03804 3.36093 3.38668 3.40414 3.55902 3.61313 3.62701 3.76384 3.87054 3.93018 4.04558 4.14143 4.24621 4.36179 4.45556 4.46149 4.47653 4.59476 4.64570 4.65929 4.74362 4.80672 4.88499 4.94745 5.02726 5.04805 5.10818 5.13428 5.20059 5.23283 5.37579 5.45180 5.48380 5.54311 5.59861 6.09626 6.28167 6.41408 6.94360 7.06985 7.34345 8.11411 8.35236 9.29250 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028650 B = 0.001728 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.086857 B =16201.742279 C =16745.212095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.975 3.025 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.246 4.246 8 H 0.074 0.926 9 N -0.744 5.744 10 C 0.157 3.843 11 C -0.087 4.087 12 H 0.071 0.929 13 C -0.107 4.107 14 C -0.122 4.122 15 C 0.143 3.857 16 H 0.086 0.914 17 N -0.690 5.690 18 C 0.566 3.434 19 O -0.556 6.556 20 C 0.127 3.873 21 C -0.146 4.146 22 C -0.025 4.025 23 C -0.154 4.154 24 C -0.041 4.041 25 C -0.162 4.162 26 C 0.159 3.841 27 N -0.510 5.510 28 C 0.269 3.731 29 N -0.465 5.465 30 C -0.110 4.110 31 H 0.251 0.749 32 H 0.375 0.625 33 H 0.020 0.980 34 H 0.019 0.981 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.417 0.583 40 H 0.162 0.838 41 H 0.196 0.804 42 H 0.187 0.813 43 H 0.188 0.812 44 H 0.197 0.803 45 H 0.088 0.912 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.369 -40.706 -1.158 40.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.803 3.197 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.195 1.195 7 C -0.378 4.378 8 H 0.092 0.908 9 N -0.387 5.387 10 C 0.031 3.969 11 C -0.106 4.106 12 H 0.090 0.910 13 C -0.145 4.145 14 C -0.160 4.160 15 C 0.039 3.961 16 H 0.104 0.896 17 N -0.341 5.341 18 C 0.350 3.650 19 O -0.434 6.434 20 C -0.029 4.029 21 C -0.167 4.167 22 C -0.051 4.051 23 C -0.159 4.159 24 C -0.068 4.068 25 C -0.182 4.182 26 C -0.017 4.017 27 N -0.221 5.221 28 C 0.031 3.969 29 N -0.178 5.178 30 C -0.148 4.148 31 H 0.060 0.940 32 H 0.206 0.794 33 H 0.038 0.962 34 H 0.037 0.963 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.254 0.746 40 H 0.180 0.820 41 H 0.213 0.787 42 H 0.204 0.796 43 H 0.205 0.795 44 H 0.214 0.786 45 H 0.107 0.893 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.519 -38.950 -0.687 38.986 hybrid contribution 0.006 0.363 -0.667 0.759 sum 1.525 -38.588 -1.354 38.641 Atomic orbital electron populations 1.69822 1.06581 1.26032 1.59578 1.25580 0.96444 1.01115 1.03770 0.85122 0.77687 0.79428 0.77418 1.21434 1.22058 1.19473 1.19659 0.91509 0.85529 1.41138 0.90793 1.42560 1.05666 1.01123 1.89302 1.20966 0.93730 0.84778 0.97417 1.21762 0.96989 0.93711 0.98155 0.91006 1.22239 1.00085 0.95516 0.96667 1.22816 0.97239 0.94806 1.01187 1.21878 0.97969 0.78447 0.97801 0.89583 1.45958 1.68638 1.05852 1.13613 1.18190 0.76996 0.85008 0.84757 1.90776 1.49354 1.81749 1.21485 1.21313 0.97324 0.94492 0.89739 1.21980 1.00220 0.93305 1.01156 1.21962 0.91485 0.96440 0.95227 1.20046 1.03043 0.96829 0.95975 1.22033 0.92583 0.94007 0.98131 1.22554 0.99113 1.02949 0.93552 1.23870 0.89474 0.86100 1.02265 1.67624 1.14518 1.23160 1.16759 1.19495 0.98060 0.88612 0.90729 1.67196 1.11814 1.20009 1.18794 1.22297 1.01399 0.94065 0.97064 0.94027 0.79355 0.96196 0.96330 0.92255 0.92585 0.91614 0.90484 0.74550 0.82009 0.78716 0.79595 0.79478 0.78632 0.89304 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.85 13.06 21.65 0.28 -60.57 16 2 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 3 Si 0.97 47.45 29.55 68.60 2.03 49.48 16 4 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 5 H -0.29 -14.31 7.11 99.48 0.71 -13.61 16 6 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.25 -14.28 9.99 84.03 0.84 -13.44 16 8 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 9 N -0.74 -39.26 5.45 -343.45 -1.87 -41.13 16 10 C 0.16 6.54 5.31 86.38 0.46 7.00 16 11 C -0.09 -2.87 2.96 -10.07 -0.03 -2.90 16 12 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 13 C -0.11 -3.53 6.09 31.72 0.19 -3.34 16 14 C -0.12 -3.40 6.59 31.94 0.21 -3.19 16 15 C 0.14 3.82 3.18 46.07 0.15 3.97 16 16 H 0.09 2.53 7.61 -2.39 -0.02 2.51 16 17 N -0.69 -17.16 5.16 -439.82 -2.27 -19.43 16 18 C 0.57 15.18 7.81 86.94 0.68 15.86 16 19 O -0.56 -17.59 15.96 -3.68 -0.06 -17.65 16 20 C 0.13 2.95 6.75 42.30 0.29 3.23 16 21 C -0.15 -2.44 9.54 22.36 0.21 -2.22 16 22 C -0.02 -0.25 9.89 22.47 0.22 -0.03 16 23 C -0.15 -2.04 5.75 -21.20 -0.12 -2.16 16 24 C -0.04 -0.20 9.90 22.49 0.22 0.02 16 25 C -0.16 -0.55 10.04 22.17 0.22 -0.33 16 26 C 0.16 1.53 11.14 85.10 0.95 2.48 16 27 N -0.51 -10.31 10.43 -193.77 -2.02 -12.33 16 28 C 0.27 5.78 7.62 135.12 1.03 6.81 16 29 N -0.46 -11.51 9.56 -182.98 -1.75 -13.25 16 30 C -0.11 -2.86 6.19 31.32 0.19 -2.67 16 31 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 32 H 0.37 20.89 7.55 -92.71 -0.70 20.19 16 33 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.02 0.79 8.00 -2.39 -0.02 0.77 16 35 H 0.06 2.06 8.14 -2.39 -0.02 2.05 16 36 H 0.06 2.04 7.76 -2.39 -0.02 2.02 16 37 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 38 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.42 9.55 7.65 -92.71 -0.71 8.84 16 40 H 0.16 2.43 7.60 -2.91 -0.02 2.40 16 41 H 0.20 0.11 8.06 -2.91 -0.02 0.08 16 42 H 0.19 -0.68 8.06 -2.91 -0.02 -0.70 16 43 H 0.19 -0.93 8.06 -2.91 -0.02 -0.96 16 44 H 0.20 0.50 8.06 -2.91 -0.02 0.48 16 45 H 0.09 2.00 7.72 -2.39 -0.02 1.98 16 46 H 0.08 2.04 7.67 -2.38 -0.02 2.02 16 Total: -1.00 -81.08 385.37 0.14 -80.95 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: -0.39 Total: 28.95 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 6.18 Total: 4.99 kcal Atomic # 7 Polarization: -139.09 SS G_CDS: -7.63 Total: -146.71 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.06 Total: -17.65 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -81.08 0.14 -80.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717870932.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.757 kcal (2) G-P(sol) polarization free energy of solvation -81.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds