Wall clock time and date at job start Tue Mar 31 2020 23:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 120.00038 * 2 1 4 4 C 1.53001 * 109.47500 * 124.99788 * 3 2 1 5 5 C 1.50694 * 109.47168 * 180.02562 * 4 3 2 6 6 O 1.21283 * 120.00363 * 359.97438 * 5 4 3 7 7 N 1.34784 * 119.99988 * 179.97438 * 5 4 3 8 8 C 1.46923 * 120.62964 * 359.97438 * 7 5 4 9 9 C 1.53190 * 108.77809 * 233.58685 * 8 7 5 10 10 C 1.53036 * 109.31273 * 305.36826 * 9 8 7 11 11 C 1.53041 * 109.53807 * 61.36337 * 10 9 8 12 12 H 1.08990 * 109.49710 * 58.58886 * 11 10 9 13 13 N 1.46502 * 109.49586 * 178.65500 * 11 10 9 14 14 C 1.46498 * 120.00388 * 59.99573 * 13 11 10 15 15 C 1.34784 * 119.99885 * 240.00143 * 13 11 10 16 16 O 1.21282 * 119.99613 * 359.97438 * 15 13 11 17 17 C 1.50698 * 120.00193 * 179.97438 * 15 13 11 18 18 S 1.81004 * 109.47029 * 179.97438 * 17 15 13 19 19 C 1.76195 * 99.99607 * 180.02562 * 18 17 15 20 20 H 1.08005 * 120.00741 * 359.97438 * 19 18 17 21 21 C 1.38803 * 119.99634 * 180.02562 * 19 18 17 22 22 N 1.31625 * 120.00065 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99906 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47007 * 59.99534 * 23 21 19 25 25 H 1.48501 * 109.47091 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47014 * 299.99729 * 23 21 19 27 27 C 1.46927 * 120.62995 * 179.71961 * 7 5 4 28 28 H 1.07999 * 119.99557 * 179.97438 * 1 2 3 29 29 H 1.07997 * 120.00168 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.00168 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.46737 * 4.99526 * 3 2 1 32 32 H 1.09002 * 109.46890 * 244.99637 * 3 2 1 33 33 H 1.08998 * 109.46837 * 60.00023 * 4 3 2 34 34 H 1.09002 * 109.46926 * 299.99827 * 4 3 2 35 35 H 1.09007 * 109.58781 * 353.37617 * 8 7 5 36 36 H 1.09003 * 109.58561 * 113.79590 * 8 7 5 37 37 H 1.09001 * 109.49704 * 65.32018 * 9 8 7 38 38 H 1.09002 * 109.49744 * 185.41599 * 9 8 7 39 39 H 1.09000 * 109.46265 * 181.38787 * 10 9 8 40 40 H 1.09010 * 109.46030 * 301.34357 * 10 9 8 41 41 H 1.09002 * 109.47059 * 90.00044 * 14 13 11 42 42 H 1.08999 * 109.47290 * 210.00028 * 14 13 11 43 43 H 1.09000 * 109.46993 * 330.00260 * 14 13 11 44 44 H 1.09003 * 109.47004 * 299.99905 * 17 15 13 45 45 H 1.08998 * 109.47031 * 59.99610 * 17 15 13 46 46 H 0.97006 * 119.99708 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.58645 * 246.19910 * 27 7 5 48 48 H 1.09001 * 109.58579 * 6.63067 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.7880 2.6385 1.1819 6 8 3.5696 3.4649 0.3215 7 7 4.7043 2.8877 2.1385 8 6 4.9796 1.8968 3.1877 9 6 4.8283 2.5712 4.5548 10 6 5.7247 3.8104 4.6098 11 6 5.2906 4.8044 3.5301 12 1 4.2475 5.0790 3.6867 13 7 6.1285 6.0039 3.6045 14 6 7.5784 5.8970 3.4243 15 6 5.5653 7.2058 3.8388 16 8 4.3649 7.2943 3.9877 17 6 6.4272 8.4396 3.9159 18 16 5.3853 9.8842 4.2382 19 6 6.6149 11.1456 4.2768 20 1 7.6536 10.8923 4.1235 21 6 6.2488 12.4648 4.5052 22 7 4.9830 12.7735 4.6925 23 14 7.5523 13.8023 4.5454 24 1 8.2566 13.8465 3.2389 25 1 6.9071 15.1146 4.8042 26 1 8.5292 13.5091 5.6247 27 6 5.4509 4.1532 2.1484 28 1 -0.5399 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1316 0.0895 32 1 2.6213 1.4025 -0.9314 33 1 3.7399 0.5067 1.0921 34 1 2.4772 1.2357 2.1130 35 1 4.2712 1.0723 3.1066 36 1 5.9963 1.5199 3.0766 37 1 3.7895 2.8668 4.7017 38 1 5.1230 1.8739 5.3391 39 1 5.6376 4.2784 5.5904 40 1 6.7605 3.5173 4.4382 41 1 7.8228 6.0136 2.3684 42 1 8.0747 6.6778 4.0005 43 1 7.9164 4.9200 3.7697 44 1 7.1520 8.3267 4.7222 45 1 6.9532 8.5749 2.9709 46 1 4.7272 13.6955 4.8526 47 1 6.5053 3.9569 1.9543 48 1 5.0534 4.8179 1.3815 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720986283.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:08 Heat of formation + Delta-G solvation = -55.578307 kcal Electronic energy + Delta-G solvation = -27148.773657 eV Core-core repulsion = 23330.321119 eV Total energy + Delta-G solvation = -3818.452538 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.71761 -39.47593 -37.60931 -35.70053 -35.25202 -32.79414 -32.41989 -31.62204 -30.60670 -28.54368 -26.86217 -26.15949 -25.48434 -24.25580 -23.18024 -21.11094 -20.15332 -19.25051 -19.06665 -17.66049 -17.44255 -16.73288 -16.35863 -16.12250 -15.66943 -15.41978 -15.18064 -14.79706 -14.66642 -14.38321 -14.09686 -13.90039 -13.79178 -13.28630 -13.16726 -13.10103 -12.96974 -12.75202 -12.59450 -12.39464 -12.32478 -11.98814 -11.67761 -11.44732 -11.37494 -11.34554 -11.17679 -11.04040 -11.03306 -10.89590 -10.75642 -10.06913 -9.81040 -9.68193 -9.37469 -9.08862 -9.04895 -8.47051 -8.22056 -6.49280 -6.20431 -3.91231 1.89837 2.37550 2.55982 2.99686 3.05578 3.24045 3.26807 3.29940 3.60561 4.12294 4.21137 4.42980 4.48194 4.50264 4.56607 4.69141 4.73451 4.86205 4.92825 4.95955 5.00125 5.04996 5.08205 5.14386 5.15491 5.23925 5.35959 5.42671 5.46736 5.50058 5.55785 5.61633 5.63833 5.69327 5.73197 5.82382 5.87957 5.95775 6.04383 6.11874 6.13477 6.27226 6.41364 6.64241 7.09202 7.49493 7.60051 7.93319 8.35770 8.53631 9.24507 10.86909 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019484 B = 0.002089 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.749702 B =13398.515743 C =14148.777220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.156 4.156 3 C -0.082 4.082 4 C -0.133 4.133 5 C 0.513 3.487 6 O -0.534 6.534 7 N -0.613 5.613 8 C 0.105 3.895 9 C -0.133 4.133 10 C -0.129 4.129 11 C 0.129 3.871 12 H 0.106 0.894 13 N -0.619 5.619 14 C 0.077 3.923 15 C 0.535 3.465 16 O -0.513 6.513 17 C -0.149 4.149 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.105 3.895 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.269 0.731 47 H 0.069 0.931 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.842 -29.916 -3.643 30.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.174 4.174 3 C -0.119 4.119 4 C -0.173 4.173 5 C 0.301 3.699 6 O -0.410 6.410 7 N -0.347 5.347 8 C -0.018 4.018 9 C -0.172 4.172 10 C -0.168 4.168 11 C 0.024 3.976 12 H 0.124 0.876 13 N -0.355 5.355 14 C -0.066 4.066 15 C 0.323 3.677 16 O -0.387 6.387 17 C -0.299 4.299 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.200 1.200 27 C -0.019 4.019 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.126 0.874 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.087 0.913 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.196 -29.167 -3.860 29.422 hybrid contribution 2.450 0.679 -0.016 2.542 sum 2.254 -28.488 -3.876 28.838 Atomic orbital electron populations 1.23916 0.96021 1.02008 1.00831 1.22945 0.96086 0.98212 1.00207 1.20532 0.97891 0.95584 0.97906 1.21646 0.98929 0.95392 1.01324 1.20776 0.79126 0.89137 0.80815 1.90739 1.65053 1.48161 1.37085 1.48085 1.40211 1.18162 1.28249 1.21819 1.01939 0.91042 0.86956 1.21907 1.01258 0.97393 0.96618 1.21903 0.99677 0.95432 0.99779 1.21352 0.97694 0.84641 0.93866 0.87648 1.47821 1.07516 1.06569 1.73601 1.21783 0.80298 1.02889 1.01678 1.20400 0.88653 0.83629 0.75054 1.90698 1.15049 1.85239 1.47725 1.23552 1.03314 0.98210 1.04872 1.85424 1.10453 0.94229 1.93342 1.22817 0.94705 0.93824 1.57062 0.90987 1.24993 0.96069 0.97953 0.94554 1.70010 1.15556 1.19497 1.45179 0.86226 0.80680 0.79861 0.78739 1.19937 1.20806 1.19951 1.21991 0.96139 0.85330 0.98418 0.88490 0.88400 0.87378 0.90542 0.90181 0.88806 0.88677 0.89402 0.91063 0.90944 0.90077 0.90786 0.91367 0.92661 0.90436 0.91305 0.89200 0.89180 0.92127 0.91274 0.88471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.24 14.32 29.01 0.42 -0.82 16 2 C -0.16 -1.01 9.52 -36.03 -0.34 -1.36 16 3 C -0.08 -0.66 4.95 -27.88 -0.14 -0.80 16 4 C -0.13 -0.93 4.03 -27.89 -0.11 -1.04 16 5 C 0.51 5.67 7.70 -10.98 -0.08 5.59 16 6 O -0.53 -8.37 15.39 5.56 0.09 -8.28 16 7 N -0.61 -5.85 2.97 -172.52 -0.51 -6.36 16 8 C 0.11 0.60 6.34 -3.71 -0.02 0.58 16 9 C -0.13 -0.86 6.08 -26.61 -0.16 -1.02 16 10 C -0.13 -1.14 5.12 -26.69 -0.14 -1.27 16 11 C 0.13 1.59 2.69 -67.60 -0.18 1.41 16 12 H 0.11 1.66 6.90 -51.93 -0.36 1.30 16 13 N -0.62 -8.67 2.77 -173.56 -0.48 -9.15 16 14 C 0.08 0.77 9.21 59.85 0.55 1.32 16 15 C 0.53 10.30 7.69 -10.98 -0.08 10.21 16 16 O -0.51 -11.99 15.19 5.56 0.08 -11.91 16 17 C -0.15 -3.05 4.71 36.00 0.17 -2.88 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 19 C -0.54 -15.35 9.50 30.94 0.29 -15.06 16 20 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 23 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 27 C 0.10 1.19 5.81 -3.50 -0.02 1.17 16 28 H 0.10 0.50 8.06 -52.49 -0.42 0.08 16 29 H 0.10 0.66 7.84 -52.49 -0.41 0.25 16 30 H 0.11 0.54 8.06 -52.49 -0.42 0.11 16 31 H 0.08 0.74 7.75 -51.93 -0.40 0.34 16 32 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 33 H 0.09 0.43 7.95 -51.93 -0.41 0.02 16 34 H 0.09 0.54 7.69 -51.93 -0.40 0.14 16 35 H 0.09 0.32 5.93 -51.93 -0.31 0.01 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.49 6.72 -51.92 -0.35 0.14 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.79 6.44 -51.93 -0.33 0.46 16 43 H 0.07 0.51 6.45 -51.93 -0.34 0.17 16 44 H 0.09 1.68 7.40 -51.92 -0.38 1.29 16 45 H 0.09 1.72 8.11 -51.92 -0.42 1.30 16 46 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 47 H 0.07 0.66 7.53 -51.93 -0.39 0.27 16 48 H 0.10 1.43 7.00 -51.93 -0.36 1.06 16 LS Contribution 398.89 15.07 6.01 6.01 Total: -1.00 -36.98 398.89 -9.06 -46.04 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -7.80 Total: -1.35 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 0.05 Total: -1.95 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: -0.26 Total: -41.14 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: 0.17 Total: -20.19 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.98 -9.06 -46.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720986283.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.541 kcal (2) G-P(sol) polarization free energy of solvation -36.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds