Wall clock time and date at job start Tue Mar 31 2020 23:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 120.00038 * 2 1 4 4 C 1.53001 * 109.47500 * 124.99788 * 3 2 1 5 5 C 1.50694 * 109.47168 * 180.02562 * 4 3 2 6 6 O 1.21283 * 120.00363 * 359.97438 * 5 4 3 7 7 N 1.34784 * 119.99988 * 179.97438 * 5 4 3 8 8 C 1.46923 * 120.62964 * 359.97438 * 7 5 4 9 9 C 1.53190 * 108.77809 * 233.58685 * 8 7 5 10 10 C 1.53036 * 109.31273 * 305.36826 * 9 8 7 11 11 C 1.53041 * 109.53807 * 61.36337 * 10 9 8 12 12 H 1.08990 * 109.49710 * 58.58886 * 11 10 9 13 13 N 1.46502 * 109.49586 * 178.65500 * 11 10 9 14 14 C 1.46498 * 120.00388 * 59.99573 * 13 11 10 15 15 C 1.34784 * 119.99885 * 240.00143 * 13 11 10 16 16 O 1.21282 * 119.99613 * 359.97438 * 15 13 11 17 17 C 1.50698 * 120.00193 * 179.97438 * 15 13 11 18 18 S 1.81004 * 109.47029 * 179.97438 * 17 15 13 19 19 C 1.76195 * 99.99607 * 180.02562 * 18 17 15 20 20 H 1.08005 * 120.00741 * 359.97438 * 19 18 17 21 21 C 1.38803 * 119.99634 * 180.02562 * 19 18 17 22 22 N 1.31625 * 120.00065 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99906 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47007 * 59.99534 * 23 21 19 25 25 H 1.48501 * 109.47091 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47014 * 299.99729 * 23 21 19 27 27 C 1.46927 * 120.62995 * 179.71961 * 7 5 4 28 28 H 1.07999 * 119.99557 * 179.97438 * 1 2 3 29 29 H 1.07997 * 120.00168 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.00168 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.46737 * 4.99526 * 3 2 1 32 32 H 1.09002 * 109.46890 * 244.99637 * 3 2 1 33 33 H 1.08998 * 109.46837 * 60.00023 * 4 3 2 34 34 H 1.09002 * 109.46926 * 299.99827 * 4 3 2 35 35 H 1.09007 * 109.58781 * 353.37617 * 8 7 5 36 36 H 1.09003 * 109.58561 * 113.79590 * 8 7 5 37 37 H 1.09001 * 109.49704 * 65.32018 * 9 8 7 38 38 H 1.09002 * 109.49744 * 185.41599 * 9 8 7 39 39 H 1.09000 * 109.46265 * 181.38787 * 10 9 8 40 40 H 1.09010 * 109.46030 * 301.34357 * 10 9 8 41 41 H 1.09002 * 109.47059 * 90.00044 * 14 13 11 42 42 H 1.08999 * 109.47290 * 210.00028 * 14 13 11 43 43 H 1.09000 * 109.46993 * 330.00260 * 14 13 11 44 44 H 1.09003 * 109.47004 * 299.99905 * 17 15 13 45 45 H 1.08998 * 109.47031 * 59.99610 * 17 15 13 46 46 H 0.97006 * 119.99708 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.58645 * 246.19910 * 27 7 5 48 48 H 1.09001 * 109.58579 * 6.63067 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.7880 2.6385 1.1819 6 8 3.5696 3.4649 0.3215 7 7 4.7043 2.8877 2.1385 8 6 4.9796 1.8968 3.1877 9 6 4.8283 2.5712 4.5548 10 6 5.7247 3.8104 4.6098 11 6 5.2906 4.8044 3.5301 12 1 4.2475 5.0790 3.6867 13 7 6.1285 6.0039 3.6045 14 6 7.5784 5.8970 3.4243 15 6 5.5653 7.2058 3.8388 16 8 4.3649 7.2943 3.9877 17 6 6.4272 8.4396 3.9159 18 16 5.3853 9.8842 4.2382 19 6 6.6149 11.1456 4.2768 20 1 7.6536 10.8923 4.1235 21 6 6.2488 12.4648 4.5052 22 7 4.9830 12.7735 4.6925 23 14 7.5523 13.8023 4.5454 24 1 8.2566 13.8465 3.2389 25 1 6.9071 15.1146 4.8042 26 1 8.5292 13.5091 5.6247 27 6 5.4509 4.1532 2.1484 28 1 -0.5399 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1316 0.0895 32 1 2.6213 1.4025 -0.9314 33 1 3.7399 0.5067 1.0921 34 1 2.4772 1.2357 2.1130 35 1 4.2712 1.0723 3.1066 36 1 5.9963 1.5199 3.0766 37 1 3.7895 2.8668 4.7017 38 1 5.1230 1.8739 5.3391 39 1 5.6376 4.2784 5.5904 40 1 6.7605 3.5173 4.4382 41 1 7.8228 6.0136 2.3684 42 1 8.0747 6.6778 4.0005 43 1 7.9164 4.9200 3.7697 44 1 7.1520 8.3267 4.7222 45 1 6.9532 8.5749 2.9709 46 1 4.7272 13.6955 4.8526 47 1 6.5053 3.9569 1.9543 48 1 5.0534 4.8179 1.3815 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720986283.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:07 Heat of formation + Delta-G solvation = -80.182401 kcal Electronic energy + Delta-G solvation = -27149.840571 eV Core-core repulsion = 23330.321119 eV Total energy + Delta-G solvation = -3819.519452 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.65197 -40.70323 -38.62357 -36.41761 -36.31431 -34.60274 -33.65305 -32.40899 -31.49039 -29.86968 -27.85404 -27.67448 -26.88113 -24.97912 -23.97472 -22.03415 -20.68563 -20.50583 -19.95278 -19.52830 -18.32176 -18.04503 -17.26543 -17.07730 -16.89688 -16.70899 -16.59619 -15.92608 -15.80856 -15.46326 -15.13654 -14.80210 -14.65778 -14.51038 -14.46982 -14.02731 -14.00447 -13.73789 -13.54411 -13.43281 -13.22511 -13.16895 -13.05258 -12.87571 -12.64087 -12.47519 -12.05642 -11.99716 -11.94765 -11.89281 -11.76905 -11.71078 -11.14299 -11.02336 -10.83889 -10.29668 -10.22482 -10.02115 -9.50632 -8.70604 -8.35859 -6.15289 1.20498 1.37114 1.42988 1.43180 1.48943 1.53718 1.59071 1.83961 2.23377 2.26711 2.98083 3.23388 3.45758 3.55785 3.78535 3.83526 3.90825 3.97960 4.00196 4.15475 4.17415 4.18298 4.28076 4.31115 4.42674 4.45482 4.48353 4.56294 4.65641 4.66373 4.71411 4.79510 4.84187 4.92217 4.94522 5.05083 5.07377 5.17160 5.20321 5.28391 5.38047 5.39532 5.60508 5.75493 5.92262 6.17433 6.19887 6.36014 7.04695 7.08022 7.12809 8.73269 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019484 B = 0.002089 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.749702 B =13398.515743 C =14148.777220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C -0.083 4.083 4 C -0.122 4.122 5 C 0.502 3.498 6 O -0.595 6.595 7 N -0.610 5.610 8 C 0.101 3.899 9 C -0.129 4.129 10 C -0.122 4.122 11 C 0.129 3.871 12 H 0.059 0.941 13 N -0.605 5.605 14 C 0.066 3.934 15 C 0.529 3.471 16 O -0.570 6.570 17 C -0.120 4.120 18 S -0.158 6.158 19 C -0.546 4.546 20 H 0.085 0.915 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.001 2.999 24 H -0.262 1.262 25 H -0.279 1.279 26 H -0.259 1.259 27 C 0.112 3.888 28 H 0.114 0.886 29 H 0.085 0.915 30 H 0.134 0.866 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.132 0.868 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.101 0.899 37 H 0.052 0.948 38 H 0.115 0.885 39 H 0.059 0.941 40 H 0.099 0.901 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.108 0.892 44 H 0.113 0.887 45 H 0.106 0.894 46 H 0.271 0.729 47 H 0.099 0.901 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.326 -33.386 -2.972 33.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.170 4.170 3 C -0.121 4.121 4 C -0.161 4.161 5 C 0.292 3.708 6 O -0.476 6.476 7 N -0.343 5.343 8 C -0.020 4.020 9 C -0.168 4.168 10 C -0.160 4.160 11 C 0.024 3.976 12 H 0.077 0.923 13 N -0.338 5.338 14 C -0.076 4.076 15 C 0.317 3.683 16 O -0.448 6.448 17 C -0.271 4.271 18 S 0.069 5.931 19 C -0.693 4.693 20 H 0.103 0.897 21 C -0.193 4.193 22 N -0.549 5.549 23 Si 0.822 3.178 24 H -0.187 1.187 25 H -0.204 1.204 26 H -0.184 1.184 27 C -0.012 4.012 28 H 0.132 0.868 29 H 0.103 0.897 30 H 0.152 0.848 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.150 0.850 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.119 0.881 37 H 0.071 0.929 38 H 0.133 0.867 39 H 0.078 0.922 40 H 0.117 0.883 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.126 0.874 44 H 0.131 0.869 45 H 0.124 0.876 46 H 0.080 0.920 47 H 0.117 0.883 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.344 -32.720 -3.166 33.042 hybrid contribution 1.372 1.634 -0.248 2.148 sum 4.715 -31.086 -3.414 31.626 Atomic orbital electron populations 1.24051 0.96344 1.02295 1.00934 1.22986 0.95967 0.98025 1.00024 1.20484 0.97712 0.95790 0.98079 1.21681 0.99003 0.93939 1.01472 1.21625 0.78985 0.89978 0.80165 1.90716 1.66876 1.50335 1.39668 1.48253 1.39322 1.17986 1.28786 1.22202 1.04586 0.90437 0.84758 1.21933 0.99628 0.96887 0.98353 1.21886 1.01874 0.95097 0.97142 1.21456 0.95225 0.84696 0.96196 0.92307 1.47826 1.09559 1.05304 1.71160 1.22163 0.77189 1.05356 1.02871 1.20269 0.87762 0.84946 0.75315 1.90679 1.17176 1.86176 1.50778 1.23355 1.02127 0.95296 1.06338 1.85659 1.14727 0.98830 1.93900 1.23161 0.94946 0.94192 1.57045 0.89727 1.26178 0.98605 1.00802 0.93695 1.70191 1.18177 1.20151 1.46340 0.84973 0.77402 0.75933 0.79491 1.18680 1.20422 1.18370 1.21773 0.97591 0.85783 0.96090 0.86785 0.89676 0.84818 0.93435 0.91536 0.85016 0.86743 0.86541 0.88062 0.92946 0.86689 0.92228 0.88262 0.91365 0.90215 0.87351 0.86883 0.87561 0.91996 0.88317 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.41 14.32 67.78 0.97 -1.44 16 2 C -0.15 -1.71 9.52 25.65 0.24 -1.47 16 3 C -0.08 -1.34 4.95 29.85 0.15 -1.19 16 4 C -0.12 -1.46 4.03 29.85 0.12 -1.34 16 5 C 0.50 11.03 7.70 87.65 0.67 11.70 16 6 O -0.60 -20.04 15.39 -3.04 -0.05 -20.09 16 7 N -0.61 -10.72 2.97 -818.13 -2.43 -13.14 16 8 C 0.10 0.72 6.34 86.36 0.55 1.27 16 9 C -0.13 -1.24 6.08 30.67 0.19 -1.06 16 10 C -0.12 -1.82 5.12 30.62 0.16 -1.66 16 11 C 0.13 3.17 2.69 45.20 0.12 3.29 16 12 H 0.06 2.02 6.90 -2.39 -0.02 2.00 16 13 N -0.60 -16.66 2.77 -821.41 -2.27 -18.94 16 14 C 0.07 1.12 9.21 127.77 1.18 2.29 16 15 C 0.53 21.13 7.69 87.66 0.67 21.80 16 16 O -0.57 -28.65 15.19 -3.04 -0.05 -28.70 16 17 C -0.12 -4.97 4.71 71.24 0.34 -4.64 16 18 S -0.16 -9.12 20.57 -56.49 -1.16 -10.28 16 19 C -0.55 -31.72 9.50 67.96 0.65 -31.07 16 20 H 0.08 4.52 7.80 -2.91 -0.02 4.49 16 21 C 0.01 0.68 5.49 84.86 0.47 1.15 16 22 N -0.91 -57.19 13.22 21.65 0.29 -56.91 16 23 Si 1.00 44.09 29.55 68.60 2.03 46.12 16 24 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 25 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 26 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 27 C 0.11 2.49 5.81 86.50 0.50 2.99 16 28 H 0.11 0.98 8.06 -2.91 -0.02 0.96 16 29 H 0.08 1.22 7.84 -2.91 -0.02 1.19 16 30 H 0.13 0.85 8.06 -2.91 -0.02 0.83 16 31 H 0.05 1.02 7.75 -2.39 -0.02 1.00 16 32 H 0.07 1.24 8.10 -2.39 -0.02 1.22 16 33 H 0.13 0.62 7.95 -2.39 -0.02 0.60 16 34 H 0.11 0.97 7.69 -2.39 -0.02 0.95 16 35 H 0.12 0.23 5.93 -2.38 -0.01 0.21 16 36 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.10 0.90 6.72 -2.38 -0.02 0.88 16 41 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 42 H 0.08 1.38 6.44 -2.39 -0.02 1.36 16 43 H 0.11 1.04 6.45 -2.39 -0.02 1.02 16 44 H 0.11 4.13 7.40 -2.39 -0.02 4.11 16 45 H 0.11 4.03 8.11 -2.40 -0.02 4.01 16 46 H 0.27 15.79 8.31 -92.70 -0.77 15.02 16 47 H 0.10 1.60 7.53 -2.39 -0.02 1.58 16 48 H 0.05 1.65 7.00 -2.39 -0.02 1.64 16 Total: -1.00 -90.58 398.89 4.27 -86.32 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.94 Total: 14.98 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: 6.97 Total: 0.63 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -4.41 Total: -88.99 kcal Atomic # 8 Polarization: -48.69 SS G_CDS: -0.09 Total: -48.78 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: -9.12 SS G_CDS: -1.16 Total: -10.28 kcal Total: -90.58 4.27 -86.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720986283.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.136 kcal (2) G-P(sol) polarization free energy of solvation -90.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds