Wall clock time and date at job start Tue Mar 31 2020 22:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46496 * 119.99759 * 2 1 4 4 C 1.52998 * 109.47337 * 89.99861 * 3 2 1 5 5 H 1.08998 * 110.88646 * 54.29654 * 4 3 2 6 6 C 1.55160 * 111.00206 * 290.41637 * 4 3 2 7 7 C 1.54323 * 102.94143 * 206.42364 * 6 4 3 8 8 N 1.47027 * 107.27491 * 22.19339 * 7 6 4 9 9 C 1.34770 * 125.65356 * 181.09663 * 8 7 6 10 10 O 1.21283 * 120.00185 * 179.97438 * 9 8 7 11 11 C 1.50700 * 119.99969 * 359.97438 * 9 8 7 12 12 C 1.52999 * 109.47247 * 179.97438 * 11 9 8 13 13 C 1.52999 * 117.49878 * 243.61889 * 12 11 9 14 14 C 1.52996 * 60.00373 * 252.51489 * 13 12 11 15 15 C 1.47468 * 108.71602 * 1.02652 * 8 7 6 16 16 C 1.34771 * 120.00084 * 179.97438 * 2 1 3 17 17 O 1.21283 * 120.00062 * 180.02562 * 16 2 1 18 18 C 1.50700 * 120.00216 * 0.02562 * 16 2 1 19 19 S 1.80999 * 109.47142 * 180.02562 * 18 16 2 20 20 C 1.76200 * 99.99765 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00446 * 0.02562 * 20 19 18 22 22 C 1.38804 * 119.99973 * 179.97438 * 20 19 18 23 23 N 1.31624 * 119.99826 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00114 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.46944 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47300 * 120.00292 * 24 22 20 27 27 H 1.48502 * 109.46741 * 239.99984 * 24 22 20 28 28 H 1.09001 * 109.47060 * 90.00688 * 1 2 3 29 29 H 1.09004 * 109.47073 * 210.00177 * 1 2 3 30 30 H 1.09000 * 109.47212 * 330.00260 * 1 2 3 31 31 H 1.09001 * 109.47057 * 210.00204 * 3 2 1 32 32 H 1.08999 * 109.47333 * 329.99764 * 3 2 1 33 33 H 1.08991 * 110.72270 * 324.78613 * 6 4 3 34 34 H 1.08995 * 110.72222 * 88.06090 * 6 4 3 35 35 H 1.09006 * 109.88569 * 141.61105 * 7 6 4 36 36 H 1.09001 * 109.88484 * 262.77869 * 7 6 4 37 37 H 1.09006 * 109.47374 * 300.00307 * 11 9 8 38 38 H 1.09007 * 109.47245 * 59.99697 * 11 9 8 39 39 H 1.08992 * 115.55109 * 29.33309 * 12 11 9 40 40 H 1.09005 * 117.50106 * 0.02562 * 13 12 11 41 41 H 1.09000 * 117.49631 * 145.02045 * 13 12 11 42 42 H 1.09002 * 117.49761 * 252.51820 * 14 13 12 43 43 H 1.08995 * 117.50481 * 107.49317 * 14 13 12 44 44 H 1.09006 * 110.40121 * 217.08266 * 15 8 7 45 45 H 1.08996 * 110.35277 * 94.75000 * 15 8 7 46 46 H 1.09000 * 109.47357 * 300.00116 * 18 16 2 47 47 H 1.08998 * 109.46869 * 60.00030 * 18 16 2 48 48 H 0.97000 * 120.00269 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 1.4425 5 1 2.9533 0.9240 2.0070 6 6 1.1313 2.1372 2.1352 7 6 1.6112 3.1354 3.2097 8 7 2.9226 3.6425 2.7800 9 6 3.6856 4.5221 3.4586 10 8 4.7556 4.8715 3.0070 11 6 3.2093 5.0714 4.7786 12 6 4.2545 6.0403 5.3349 13 6 4.9337 5.6659 6.6537 14 6 3.9043 6.7971 6.6177 15 6 3.2661 3.0281 1.4841 16 6 2.1389 -1.1671 0.0005 17 8 3.3518 -1.1671 0.0010 18 6 1.3855 -2.4723 0.0005 19 16 2.5618 -3.8480 0.0020 20 6 1.4417 -5.2081 0.0026 21 1 0.3764 -5.0305 0.0016 22 6 1.9284 -6.5080 0.0032 23 7 3.2268 -6.7246 0.0029 24 14 0.7410 -7.9501 0.0030 25 1 -0.6545 -7.4422 0.0028 26 1 0.9674 -8.7776 -1.2090 27 1 0.9662 -8.7768 1.2159 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 3.1499 1.1384 -0.5139 32 1 1.6084 2.0284 -0.5139 33 1 0.4640 2.6259 1.4253 34 1 0.6432 1.2789 2.5967 35 1 0.9035 3.9605 3.2917 36 1 1.7062 2.6290 4.1702 37 1 2.2658 5.5979 4.6339 38 1 3.0635 4.2515 5.4820 39 1 4.8545 6.5630 4.5900 40 1 4.6362 4.7291 7.1249 41 1 5.9810 5.9421 6.7766 42 1 4.2743 7.8176 6.7168 43 1 2.9293 6.6049 7.0653 44 1 4.3342 2.8160 1.4353 45 1 2.9706 3.6825 0.6641 46 1 0.7585 -2.5299 0.8903 47 1 0.7592 -2.5302 -0.8897 48 1 3.5670 -7.6329 0.0037 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721302534.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:54 Heat of formation + Delta-G solvation = -47.059828 kcal Electronic energy + Delta-G solvation = -26662.974026 eV Core-core repulsion = 22844.890877 eV Total energy + Delta-G solvation = -3818.083149 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.53764 -39.54450 -38.15143 -37.08835 -35.38040 -32.67718 -32.45027 -30.22081 -30.06404 -28.86983 -27.06975 -25.61976 -25.08234 -23.40169 -22.73176 -21.37447 -20.77506 -19.59727 -19.06457 -17.70634 -17.50518 -16.84847 -16.51320 -16.14174 -15.97833 -15.47560 -15.14550 -14.82530 -14.63004 -14.26743 -14.02643 -13.93718 -13.66159 -13.42424 -13.04613 -12.87251 -12.85710 -12.62117 -12.59886 -12.31613 -12.20870 -12.01038 -11.87770 -11.82628 -11.47637 -11.15693 -11.09047 -11.03847 -10.89596 -10.76687 -10.73068 -10.40175 -10.05027 -9.81854 -9.40255 -9.09486 -8.95204 -8.58912 -8.24277 -6.52399 -6.23757 -3.94486 2.37827 2.60777 2.91347 3.02078 3.19686 3.24151 3.29187 3.43600 3.57152 4.05784 4.18071 4.21501 4.30103 4.41374 4.51770 4.55399 4.74139 4.78000 4.90517 4.96470 5.05164 5.06571 5.11494 5.11825 5.13510 5.21573 5.26054 5.27822 5.31831 5.44625 5.46218 5.52732 5.54205 5.56960 5.62859 5.66747 5.74978 5.83763 5.88260 5.92086 5.97132 6.04983 6.10073 6.59188 7.21621 7.47347 7.57724 7.90214 8.33130 8.51950 9.21628 10.83697 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019469 B = 0.001877 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.826707 B =14914.441659 C =15376.009914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.623 5.623 3 C 0.130 3.870 4 C -0.117 4.117 5 H 0.093 0.907 6 C -0.127 4.127 7 C 0.100 3.900 8 N -0.621 5.621 9 C 0.530 3.470 10 O -0.537 6.537 11 C -0.105 4.105 12 C -0.143 4.143 13 C -0.178 4.178 14 C -0.180 4.180 15 C 0.113 3.887 16 C 0.532 3.468 17 O -0.513 6.513 18 C -0.150 4.150 19 S -0.062 6.062 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.118 0.882 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.292 25.729 8.712 28.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.359 5.359 3 C 0.006 3.994 4 C -0.138 4.138 5 H 0.111 0.889 6 C -0.164 4.164 7 C -0.023 4.023 8 N -0.356 5.356 9 C 0.319 3.681 10 O -0.414 6.414 11 C -0.145 4.145 12 C -0.161 4.161 13 C -0.215 4.215 14 C -0.217 4.217 15 C -0.009 4.009 16 C 0.320 3.680 17 O -0.387 6.387 18 C -0.300 4.300 19 S 0.164 5.836 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.136 0.864 40 H 0.112 0.888 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.112 0.888 44 H 0.101 0.899 45 H 0.088 0.912 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.730 25.841 8.512 27.804 hybrid contribution -2.385 -1.026 0.083 2.598 sum -8.115 24.815 8.595 27.487 Atomic orbital electron populations 1.21839 0.79710 1.03154 1.01853 1.47819 1.06756 1.05482 1.75850 1.21229 0.98465 0.85114 0.94564 1.22833 0.95795 0.97026 0.98117 0.88865 1.22765 0.97521 0.98628 0.97518 1.22082 0.84253 0.97256 0.98695 1.48529 1.20318 1.44306 1.22416 1.20266 0.83790 0.78050 0.85973 1.90710 1.22022 1.59060 1.69591 1.21197 0.99502 0.99379 0.94381 1.22068 1.01071 1.01489 0.91499 1.23045 0.98396 0.99568 1.00462 1.22998 1.00354 0.97203 1.01148 1.22187 1.00877 0.92792 0.85087 1.20373 0.87962 0.84598 0.75078 1.90708 1.13725 1.86767 1.47488 1.23553 1.04547 0.97275 1.04669 1.85429 1.08052 0.93389 1.96696 1.22895 0.94316 0.92201 1.58913 0.90900 1.24996 0.95664 0.98396 0.94540 1.70024 1.11735 1.21587 1.46864 0.86121 0.80330 0.81141 0.77922 1.19621 1.20551 1.20573 0.92718 0.90650 0.91274 0.89297 0.90489 0.90347 0.89640 0.91259 0.91246 0.88585 0.88797 0.86387 0.88767 0.88655 0.88644 0.88766 0.89929 0.91215 0.89309 0.89287 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 10.00 59.85 0.60 1.28 16 2 N -0.62 -7.82 2.82 -181.57 -0.51 -8.33 16 3 C 0.13 1.36 4.92 -4.04 -0.02 1.34 16 4 C -0.12 -1.14 3.27 -88.47 -0.29 -1.43 16 5 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 6 C -0.13 -0.85 4.96 -24.90 -0.12 -0.98 16 7 C 0.10 0.65 6.49 -3.06 -0.02 0.63 16 8 N -0.62 -5.93 3.33 -170.48 -0.57 -6.50 16 9 C 0.53 5.82 7.85 -10.99 -0.09 5.73 16 10 O -0.54 -8.06 15.82 5.55 0.09 -7.97 16 11 C -0.10 -0.78 5.17 -27.88 -0.14 -0.92 16 12 C -0.14 -1.17 5.42 -90.62 -0.49 -1.66 16 13 C -0.18 -1.31 10.18 -26.73 -0.27 -1.58 16 14 C -0.18 -1.11 10.25 -26.73 -0.27 -1.39 16 15 C 0.11 1.14 6.38 -2.50 -0.02 1.12 16 16 C 0.53 9.59 7.69 -10.99 -0.08 9.51 16 17 O -0.51 -11.33 15.44 5.55 0.09 -11.24 16 18 C -0.15 -2.94 4.71 36.01 0.17 -2.77 16 19 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 20 C -0.53 -15.04 9.50 30.94 0.29 -14.75 16 21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -25.99 13.22 55.49 0.73 -25.25 16 24 Si 0.92 21.16 29.55 -169.99 -5.02 16.14 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.69 6.44 -51.93 -0.33 0.36 16 30 H 0.07 0.42 6.23 -51.93 -0.32 0.09 16 31 H 0.09 1.12 7.42 -51.93 -0.39 0.74 16 32 H 0.08 0.59 7.97 -51.93 -0.41 0.17 16 33 H 0.08 0.41 7.39 -51.93 -0.38 0.03 16 34 H 0.08 0.58 8.12 -51.93 -0.42 0.16 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.09 0.58 7.87 -51.93 -0.41 0.17 16 39 H 0.12 1.19 7.30 -51.93 -0.38 0.81 16 40 H 0.09 0.64 8.03 -51.93 -0.42 0.22 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 1.00 8.04 -51.93 -0.42 0.58 16 45 H 0.07 0.62 8.04 -51.93 -0.42 0.20 16 46 H 0.09 1.59 7.40 -51.92 -0.38 1.21 16 47 H 0.09 1.62 8.11 -51.92 -0.42 1.20 16 48 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 403.97 15.07 6.09 6.09 Total: -1.00 -36.37 403.97 -10.21 -46.58 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -8.03 Total: -1.76 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -0.85 Total: -3.87 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: -0.35 Total: -40.08 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: 0.17 Total: -19.21 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.37 -10.21 -46.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721302534.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.482 kcal (2) G-P(sol) polarization free energy of solvation -36.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds