Wall clock time and date at job start Tue Mar 31 2020 22:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46496 * 119.99759 * 2 1 4 4 C 1.52998 * 109.47337 * 89.99861 * 3 2 1 5 5 H 1.08998 * 110.88646 * 54.29654 * 4 3 2 6 6 C 1.55160 * 111.00206 * 290.41637 * 4 3 2 7 7 C 1.54323 * 102.94143 * 206.42364 * 6 4 3 8 8 N 1.47027 * 107.27491 * 22.19339 * 7 6 4 9 9 C 1.34770 * 125.65356 * 181.09663 * 8 7 6 10 10 O 1.21283 * 120.00185 * 179.97438 * 9 8 7 11 11 C 1.50700 * 119.99969 * 359.97438 * 9 8 7 12 12 C 1.52999 * 109.47247 * 179.97438 * 11 9 8 13 13 C 1.52999 * 117.49878 * 243.61889 * 12 11 9 14 14 C 1.52996 * 60.00373 * 252.51489 * 13 12 11 15 15 C 1.47468 * 108.71602 * 1.02652 * 8 7 6 16 16 C 1.34771 * 120.00084 * 179.97438 * 2 1 3 17 17 O 1.21283 * 120.00062 * 180.02562 * 16 2 1 18 18 C 1.50700 * 120.00216 * 0.02562 * 16 2 1 19 19 S 1.80999 * 109.47142 * 180.02562 * 18 16 2 20 20 C 1.76200 * 99.99765 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00446 * 0.02562 * 20 19 18 22 22 C 1.38804 * 119.99973 * 179.97438 * 20 19 18 23 23 N 1.31624 * 119.99826 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00114 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.46944 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47300 * 120.00292 * 24 22 20 27 27 H 1.48502 * 109.46741 * 239.99984 * 24 22 20 28 28 H 1.09001 * 109.47060 * 90.00688 * 1 2 3 29 29 H 1.09004 * 109.47073 * 210.00177 * 1 2 3 30 30 H 1.09000 * 109.47212 * 330.00260 * 1 2 3 31 31 H 1.09001 * 109.47057 * 210.00204 * 3 2 1 32 32 H 1.08999 * 109.47333 * 329.99764 * 3 2 1 33 33 H 1.08991 * 110.72270 * 324.78613 * 6 4 3 34 34 H 1.08995 * 110.72222 * 88.06090 * 6 4 3 35 35 H 1.09006 * 109.88569 * 141.61105 * 7 6 4 36 36 H 1.09001 * 109.88484 * 262.77869 * 7 6 4 37 37 H 1.09006 * 109.47374 * 300.00307 * 11 9 8 38 38 H 1.09007 * 109.47245 * 59.99697 * 11 9 8 39 39 H 1.08992 * 115.55109 * 29.33309 * 12 11 9 40 40 H 1.09005 * 117.50106 * 0.02562 * 13 12 11 41 41 H 1.09000 * 117.49631 * 145.02045 * 13 12 11 42 42 H 1.09002 * 117.49761 * 252.51820 * 14 13 12 43 43 H 1.08995 * 117.50481 * 107.49317 * 14 13 12 44 44 H 1.09006 * 110.40121 * 217.08266 * 15 8 7 45 45 H 1.08996 * 110.35277 * 94.75000 * 15 8 7 46 46 H 1.09000 * 109.47357 * 300.00116 * 18 16 2 47 47 H 1.08998 * 109.46869 * 60.00030 * 18 16 2 48 48 H 0.97000 * 120.00269 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 1.4425 5 1 2.9533 0.9240 2.0070 6 6 1.1313 2.1372 2.1352 7 6 1.6112 3.1354 3.2097 8 7 2.9226 3.6425 2.7800 9 6 3.6856 4.5221 3.4586 10 8 4.7556 4.8715 3.0070 11 6 3.2093 5.0714 4.7786 12 6 4.2545 6.0403 5.3349 13 6 4.9337 5.6659 6.6537 14 6 3.9043 6.7971 6.6177 15 6 3.2661 3.0281 1.4841 16 6 2.1389 -1.1671 0.0005 17 8 3.3518 -1.1671 0.0010 18 6 1.3855 -2.4723 0.0005 19 16 2.5618 -3.8480 0.0020 20 6 1.4417 -5.2081 0.0026 21 1 0.3764 -5.0305 0.0016 22 6 1.9284 -6.5080 0.0032 23 7 3.2268 -6.7246 0.0029 24 14 0.7410 -7.9501 0.0030 25 1 -0.6545 -7.4422 0.0028 26 1 0.9674 -8.7776 -1.2090 27 1 0.9662 -8.7768 1.2159 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5138 31 1 3.1499 1.1384 -0.5139 32 1 1.6084 2.0284 -0.5139 33 1 0.4640 2.6259 1.4253 34 1 0.6432 1.2789 2.5967 35 1 0.9035 3.9605 3.2917 36 1 1.7062 2.6290 4.1702 37 1 2.2658 5.5979 4.6339 38 1 3.0635 4.2515 5.4820 39 1 4.8545 6.5630 4.5900 40 1 4.6362 4.7291 7.1249 41 1 5.9810 5.9421 6.7766 42 1 4.2743 7.8176 6.7168 43 1 2.9293 6.6049 7.0653 44 1 4.3342 2.8160 1.4353 45 1 2.9706 3.6825 0.6641 46 1 0.7585 -2.5299 0.8903 47 1 0.7592 -2.5302 -0.8897 48 1 3.5670 -7.6329 0.0037 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721302534.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:53 Heat of formation + Delta-G solvation = -70.436450 kcal Electronic energy + Delta-G solvation = -26663.987712 eV Core-core repulsion = 22844.890877 eV Total energy + Delta-G solvation = -3819.096836 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.37992 -40.71753 -38.95940 -37.80442 -36.52883 -34.58465 -33.58697 -31.27074 -30.68757 -29.94165 -27.89519 -27.69021 -26.14199 -24.12294 -23.24264 -22.06257 -21.53172 -20.63328 -20.12042 -19.46799 -18.29724 -17.90175 -17.64965 -17.08645 -16.88082 -16.84197 -16.54319 -16.15233 -15.67442 -15.28514 -14.94624 -14.80008 -14.67098 -14.47905 -14.20880 -14.04751 -13.70491 -13.60235 -13.49589 -13.34255 -13.15785 -13.08786 -12.94394 -12.90655 -12.56671 -12.47851 -12.36041 -12.23926 -11.84186 -11.71600 -11.60334 -11.33261 -11.15900 -11.03726 -10.86699 -10.79591 -10.24647 -9.74346 -9.62928 -8.67265 -8.34578 -6.12908 1.26962 1.41644 1.47050 1.55990 1.58294 1.60762 1.91365 2.17224 2.28077 2.88858 2.99808 3.27734 3.38323 3.57483 3.70181 3.74074 3.76619 3.87285 4.01864 4.15093 4.25027 4.26556 4.28597 4.32068 4.39023 4.46629 4.50545 4.55266 4.60322 4.64718 4.71553 4.75075 4.78863 4.81025 4.89037 4.94569 5.02022 5.02580 5.11230 5.20909 5.25000 5.30766 5.33980 5.42126 5.61961 6.20019 6.30238 6.48215 7.06783 7.10432 7.18518 8.74897 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019469 B = 0.001877 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.826707 B =14914.441659 C =15376.009914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.605 5.605 3 C 0.129 3.871 4 C -0.111 4.111 5 H 0.053 0.947 6 C -0.117 4.117 7 C 0.096 3.904 8 N -0.622 5.622 9 C 0.520 3.480 10 O -0.592 6.592 11 C -0.093 4.093 12 C -0.163 4.163 13 C -0.190 4.190 14 C -0.158 4.158 15 C 0.113 3.887 16 C 0.528 3.472 17 O -0.568 6.568 18 C -0.122 4.122 19 S -0.160 6.160 20 C -0.543 4.543 21 H 0.085 0.915 22 C 0.012 3.988 23 N -0.913 5.913 24 Si 0.999 3.001 25 H -0.254 1.254 26 H -0.275 1.275 27 H -0.275 1.275 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.058 0.942 32 H 0.121 0.879 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.125 0.875 38 H 0.111 0.889 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.115 0.885 44 H 0.046 0.954 45 H 0.087 0.913 46 H 0.110 0.890 47 H 0.107 0.893 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.173 27.081 9.607 31.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.339 5.339 3 C 0.006 3.994 4 C -0.131 4.131 5 H 0.071 0.929 6 C -0.155 4.155 7 C -0.026 4.026 8 N -0.355 5.355 9 C 0.310 3.690 10 O -0.473 6.473 11 C -0.133 4.133 12 C -0.181 4.181 13 C -0.227 4.227 14 C -0.194 4.194 15 C -0.010 4.010 16 C 0.316 3.684 17 O -0.447 6.447 18 C -0.273 4.273 19 S 0.067 5.933 20 C -0.691 4.691 21 H 0.103 0.897 22 C -0.193 4.193 23 N -0.549 5.549 24 Si 0.821 3.179 25 H -0.177 1.177 26 H -0.201 1.201 27 H -0.200 1.200 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.127 0.873 31 H 0.077 0.923 32 H 0.139 0.861 33 H 0.127 0.873 34 H 0.110 0.890 35 H 0.121 0.879 36 H 0.094 0.906 37 H 0.143 0.857 38 H 0.129 0.871 39 H 0.108 0.892 40 H 0.120 0.880 41 H 0.106 0.894 42 H 0.118 0.882 43 H 0.133 0.867 44 H 0.065 0.935 45 H 0.105 0.895 46 H 0.128 0.872 47 H 0.125 0.875 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.696 27.228 9.416 30.732 hybrid contribution -0.873 -1.303 -0.216 1.583 sum -11.569 25.925 9.200 29.843 Atomic orbital electron populations 1.22216 0.76574 1.05133 1.03523 1.47777 1.08564 1.04281 1.73252 1.21402 0.97865 0.84876 0.95242 1.22607 0.97637 0.95472 0.97403 0.92878 1.22813 0.95770 0.99080 0.97819 1.22348 0.83037 0.98360 0.98812 1.48668 1.21384 1.43520 1.21952 1.21024 0.83176 0.77782 0.86981 1.90684 1.24430 1.61075 1.71065 1.21215 1.00079 0.99716 0.92250 1.22019 1.01868 1.02656 0.91586 1.23131 0.98622 1.00724 1.00219 1.23085 1.00717 0.96924 0.98707 1.22111 0.98996 0.93506 0.86410 1.20185 0.87241 0.85702 0.75307 1.90695 1.15940 1.87540 1.50491 1.23367 1.02580 0.94916 1.06416 1.85660 1.12963 0.97621 1.97027 1.23229 0.94638 0.92549 1.58650 0.89740 1.26152 0.97572 1.01778 0.93778 1.70198 1.14193 1.22380 1.48154 0.84896 0.78279 0.76712 0.77998 1.17736 1.20059 1.20029 0.91152 0.90786 0.87306 0.92349 0.86087 0.87347 0.89010 0.87949 0.90555 0.85676 0.87137 0.89192 0.88044 0.89383 0.88153 0.86686 0.93520 0.89489 0.87230 0.87493 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.88 10.00 127.77 1.28 2.16 16 2 N -0.61 -14.01 2.82 -846.75 -2.39 -16.39 16 3 C 0.13 2.52 4.92 86.38 0.42 2.94 16 4 C -0.11 -2.06 3.27 -9.40 -0.03 -2.09 16 5 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 6 C -0.12 -1.11 4.96 31.78 0.16 -0.95 16 7 C 0.10 0.90 6.49 86.73 0.56 1.46 16 8 N -0.62 -11.16 3.33 -811.67 -2.70 -13.86 16 9 C 0.52 11.33 7.85 87.66 0.69 12.02 16 10 O -0.59 -18.89 15.82 -3.04 -0.05 -18.93 16 11 C -0.09 -1.21 5.17 29.85 0.15 -1.05 16 12 C -0.16 -2.59 5.42 -10.79 -0.06 -2.65 16 13 C -0.19 -2.69 10.18 30.59 0.31 -2.38 16 14 C -0.16 -1.64 10.25 30.60 0.31 -1.33 16 15 C 0.11 2.28 6.38 86.85 0.55 2.84 16 16 C 0.53 19.12 7.69 87.66 0.67 19.80 16 17 O -0.57 -26.49 15.44 -3.04 -0.05 -26.53 16 18 C -0.12 -4.71 4.71 71.24 0.34 -4.38 16 19 S -0.16 -8.88 20.57 -56.49 -1.16 -10.04 16 20 C -0.54 -30.71 9.50 67.96 0.65 -30.06 16 21 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 22 C 0.01 0.66 5.49 84.86 0.47 1.13 16 23 N -0.91 -56.21 13.22 21.65 0.29 -55.92 16 24 Si 1.00 43.17 29.55 68.60 2.03 45.20 16 25 H -0.25 -10.11 7.11 99.48 0.71 -9.41 16 26 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 27 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 1.06 6.44 -2.38 -0.02 1.04 16 30 H 0.11 0.63 6.23 -2.39 -0.01 0.61 16 31 H 0.06 1.53 7.42 -2.39 -0.02 1.51 16 32 H 0.12 1.35 7.97 -2.39 -0.02 1.33 16 33 H 0.11 0.44 7.39 -2.39 -0.02 0.43 16 34 H 0.09 0.83 8.12 -2.39 -0.02 0.81 16 35 H 0.10 0.38 8.14 -2.38 -0.02 0.36 16 36 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.13 0.87 8.14 -2.38 -0.02 0.86 16 38 H 0.11 1.08 7.87 -2.38 -0.02 1.06 16 39 H 0.09 1.95 7.30 -2.39 -0.02 1.93 16 40 H 0.10 1.26 8.03 -2.38 -0.02 1.24 16 41 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.05 1.26 8.04 -2.38 -0.02 1.24 16 45 H 0.09 1.45 8.04 -2.39 -0.02 1.43 16 46 H 0.11 3.76 7.40 -2.40 -0.02 3.75 16 47 H 0.11 3.74 8.11 -2.40 -0.02 3.72 16 48 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -87.41 403.97 3.38 -84.03 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.94 Total: 15.00 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 6.48 Total: -2.55 kcal Atomic # 7 Polarization: -81.37 SS G_CDS: -4.80 Total: -86.17 kcal Atomic # 8 Polarization: -45.37 SS G_CDS: -0.10 Total: -45.47 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: -8.88 SS G_CDS: -1.16 Total: -10.04 kcal Total: -87.41 3.38 -84.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721302534.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.596 kcal (2) G-P(sol) polarization free energy of solvation -87.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds