Wall clock time and date at job start Tue Mar 31 2020 23:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99924 * 2 1 4 4 H 1.48502 * 109.46815 * 274.46057 * 3 2 1 5 5 H 1.48500 * 109.46898 * 34.45837 * 3 2 1 6 6 H 1.48495 * 109.47078 * 154.45511 * 3 2 1 7 7 C 1.38810 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99777 * 189.00875 * 7 2 1 9 9 N 1.36930 * 120.00157 * 9.01509 * 7 2 1 10 10 C 1.47827 * 127.86364 * 15.60659 * 9 7 2 11 11 C 1.54384 * 104.69249 * 140.39168 * 10 9 7 12 12 H 1.09004 * 118.18280 * 244.26453 * 11 10 9 13 13 C 1.52997 * 118.12635 * 87.25276 * 11 10 9 14 14 H 1.09006 * 117.44272 * 16.10960 * 13 11 10 15 15 C 1.53001 * 117.44567 * 160.85139 * 13 11 10 16 16 N 1.46502 * 109.47000 * 185.17098 * 15 13 11 17 17 C 1.34785 * 119.99694 * 180.02562 * 16 15 13 18 18 O 1.21280 * 119.99708 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99880 * 179.97438 * 17 16 15 20 20 C 1.50692 * 109.47046 * 180.02562 * 19 17 16 21 21 C 1.39690 * 119.09649 * 89.99876 * 20 19 17 22 22 C 1.35646 * 121.72454 * 179.97438 * 21 20 19 23 23 C 1.41128 * 119.53960 * 0.02562 * 22 21 20 24 24 C 1.38245 * 134.81393 * 179.97438 * 23 22 21 25 25 N 1.33985 * 107.90560 * 180.02562 * 24 23 22 26 26 H 0.97004 * 125.02423 * 180.02562 * 25 24 23 27 27 N 1.39960 * 109.95771 * 0.02562 * 25 24 23 28 28 C 1.32062 * 108.95571 * 359.97438 * 27 25 24 29 29 C 1.35641 * 119.09177 * 269.73061 * 20 19 17 30 30 C 1.53001 * 60.49740 * 268.47842 * 13 11 10 31 31 H 1.08996 * 119.53597 * 248.20987 * 30 13 11 32 32 C 1.48147 * 127.84015 * 195.59948 * 9 7 2 33 33 H 0.97002 * 120.00349 * 359.97438 * 1 2 3 34 34 H 1.09001 * 110.31793 * 21.60514 * 10 9 7 35 35 H 1.09004 * 110.42591 * 259.22487 * 10 9 7 36 36 H 1.09003 * 109.47179 * 305.16568 * 15 13 11 37 37 H 1.08996 * 109.47351 * 65.16761 * 15 13 11 38 38 H 0.96992 * 120.00519 * 359.97438 * 16 15 13 39 39 H 1.09003 * 109.46881 * 300.00008 * 19 17 16 40 40 H 1.08996 * 109.46997 * 59.99803 * 19 17 16 41 41 H 1.07996 * 119.13226 * 359.97438 * 21 20 19 42 42 H 1.08004 * 120.22555 * 180.02562 * 22 21 20 43 43 H 1.08001 * 126.05201 * 0.02634 * 24 23 22 44 44 H 1.08002 * 120.19407 * 0.02562 * 29 20 19 45 45 H 1.09007 * 110.40731 * 100.80870 * 32 9 7 46 46 H 1.09005 * 110.40520 * 338.38282 * 32 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4033 2.1009 -1.3959 5 1 1.4979 2.6236 0.7922 6 1 3.5916 1.4149 0.6037 7 6 2.0102 -1.2021 0.0005 8 1 3.0802 -1.2078 0.1470 9 7 1.3383 -2.3808 -0.1847 10 6 -0.0318 -2.5718 -0.7060 11 6 0.0640 -3.8186 -1.6114 12 1 -0.1236 -3.6958 -2.6781 13 6 -0.1193 -5.1940 -0.9667 14 1 -0.5684 -5.2277 0.0259 15 6 -0.4694 -6.3639 -1.8885 16 7 -0.7245 -7.5607 -1.0831 17 6 -1.0529 -8.7209 -1.6855 18 8 -1.1375 -8.7738 -2.8942 19 6 -1.3147 -9.9523 -0.8571 20 6 -1.6585 -11.1048 -1.7651 21 6 -0.6318 -11.9222 -2.2437 22 6 -0.8807 -12.9740 -3.0632 23 6 -2.2086 -13.2571 -3.4482 24 6 -2.8093 -14.2148 -4.2438 25 7 -4.1289 -13.9828 -4.2425 26 1 -4.7873 -14.5094 -4.7224 27 7 -4.4173 -12.8683 -3.4465 28 6 -3.2904 -12.3960 -2.9453 29 6 -2.9570 -11.3232 -2.0908 30 6 1.2851 -4.5986 -1.0854 31 1 2.0081 -5.0575 -1.7598 32 6 1.8195 -3.7544 0.0916 33 1 -0.4851 0.8400 0.0004 34 1 -0.3403 -1.7028 -1.2871 35 1 -0.7290 -2.7495 0.1129 36 1 -1.3607 -6.1176 -2.4656 37 1 0.3621 -6.5531 -2.5673 38 1 -0.6565 -7.5185 -0.1165 39 1 -0.4233 -10.1982 -0.2800 40 1 -2.1464 -9.7634 -0.1783 41 1 0.3869 -11.7111 -1.9535 42 1 -0.0682 -13.5904 -3.4187 43 1 -2.3044 -15.0095 -4.7728 44 1 -3.7304 -10.6771 -1.7026 45 1 1.4121 -4.1172 1.0353 46 1 2.9090 -3.7783 0.1127 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725314963.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:26 Heat of formation + Delta-G solvation = 115.875958 kcal Electronic energy + Delta-G solvation = -27272.869282 eV Core-core repulsion = 23358.700358 eV Total energy + Delta-G solvation = -3914.168924 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.53965 -39.90099 -38.80001 -37.52355 -34.91636 -33.34345 -32.73239 -32.24591 -30.85628 -29.16257 -28.69192 -27.14373 -26.86559 -24.84635 -23.67972 -21.85353 -21.11756 -21.00545 -20.61214 -19.69438 -19.23717 -18.39871 -17.13966 -17.02953 -16.77815 -16.24603 -15.64606 -15.40338 -15.16611 -14.78087 -14.61725 -14.30631 -14.19876 -13.81051 -13.56903 -13.20037 -13.11136 -12.80140 -12.66991 -12.25951 -12.02244 -11.92563 -11.82885 -11.75455 -11.25190 -11.08658 -10.84431 -10.63621 -10.60384 -10.58144 -10.29256 -10.12014 -9.98771 -9.74231 -9.38404 -9.13023 -8.90778 -8.89208 -8.63214 -7.88870 -6.86804 -5.79916 -3.14433 0.33845 1.53008 2.17102 2.36823 2.63479 3.13167 3.38351 3.43705 3.45736 3.66820 3.95211 4.16248 4.25642 4.46490 4.51534 4.75919 4.85154 4.89106 4.94253 4.99108 5.21897 5.24294 5.31788 5.36661 5.40566 5.41424 5.45863 5.53540 5.81745 5.89570 5.92155 5.94770 5.99480 6.17427 6.24116 6.24409 6.40060 6.42086 6.57524 6.61486 6.67133 6.72220 6.72415 6.92783 7.28267 7.36535 7.50640 7.53752 7.72164 8.21635 8.22569 9.11445 9.73900 10.51003 11.34311 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.040524 B = 0.001545 C = 0.001521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.782862 B =18124.426255 C =18409.531639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.594 5.594 10 C 0.184 3.816 11 C -0.162 4.162 12 H 0.103 0.897 13 C -0.149 4.149 14 H 0.103 0.897 15 C 0.155 3.845 16 N -0.725 5.725 17 C 0.512 3.488 18 O -0.534 6.534 19 C -0.106 4.106 20 C -0.018 4.018 21 C -0.135 4.135 22 C -0.046 4.046 23 C -0.206 4.206 24 C 0.079 3.921 25 N -0.428 5.428 26 H 0.443 0.557 27 N -0.308 5.308 28 C 0.109 3.891 29 C -0.092 4.092 30 C -0.172 4.172 31 H 0.102 0.898 32 C 0.154 3.846 33 H 0.254 0.746 34 H 0.090 0.910 35 H 0.023 0.977 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.402 0.598 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.187 0.813 44 H 0.127 0.873 45 H 0.024 0.976 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.693 -30.812 -4.590 31.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.356 4.356 8 H 0.094 0.906 9 N -0.318 5.318 10 C 0.058 3.942 11 C -0.183 4.183 12 H 0.121 0.879 13 C -0.168 4.168 14 H 0.121 0.879 15 C 0.032 3.968 16 N -0.378 5.378 17 C 0.298 3.702 18 O -0.410 6.410 19 C -0.146 4.146 20 C -0.023 4.023 21 C -0.154 4.154 22 C -0.066 4.066 23 C -0.216 4.216 24 C -0.078 4.078 25 N -0.128 5.128 26 H 0.287 0.713 27 N -0.137 5.137 28 C -0.044 4.044 29 C -0.114 4.114 30 C -0.191 4.191 31 H 0.120 0.880 32 C 0.027 3.973 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.041 0.959 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.236 0.764 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.204 0.796 44 H 0.145 0.855 45 H 0.042 0.958 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.079 -30.370 -5.488 31.455 hybrid contribution 0.972 0.456 0.077 1.076 sum -5.106 -29.914 -5.411 30.826 Atomic orbital electron populations 1.69898 1.05062 1.25406 1.55807 1.24899 0.95645 0.97980 1.01744 0.86092 0.78724 0.83311 0.77572 1.21527 1.21666 1.20490 1.19015 0.90820 0.82369 1.43365 0.90553 1.45134 1.13328 1.00042 1.73252 1.21010 0.86852 0.92767 0.93588 1.24221 1.02173 0.91786 1.00103 0.87934 1.22528 1.00240 0.93798 1.00248 0.87924 1.20855 1.00987 0.82299 0.92691 1.46049 1.71033 1.09818 1.10850 1.20454 0.76863 0.84201 0.88724 1.90744 1.50809 1.85020 1.14410 1.20766 1.04771 0.91368 0.97734 1.18759 0.92711 0.94472 0.96393 1.20382 0.98690 0.96066 1.00312 1.20152 0.93366 0.96940 0.96191 1.19659 0.95527 0.99882 1.06525 1.22684 0.85029 1.00100 1.00027 1.46314 1.06756 1.23280 1.36499 0.71334 1.77696 1.20282 1.01482 1.14191 1.20859 0.90242 0.96221 0.97098 1.19643 0.96115 0.96377 0.99217 1.23969 0.89848 1.02637 1.02690 0.87960 1.21145 0.97120 0.86006 0.92980 0.93557 0.89198 0.95914 0.91215 0.91513 0.76378 0.87522 0.87635 0.85987 0.85787 0.79585 0.85509 0.95831 0.93219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.75 10.86 55.49 0.60 -26.15 16 2 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 3 Si 0.91 21.89 29.56 -169.99 -5.03 16.87 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.23 -6.33 10.35 -15.06 -0.16 -6.48 16 8 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 9 N -0.59 -15.15 3.37 -169.12 -0.57 -15.72 16 10 C 0.18 4.38 5.69 -2.59 -0.01 4.36 16 11 C -0.16 -3.05 6.85 -89.30 -0.61 -3.66 16 12 H 0.10 1.85 8.14 -51.93 -0.42 1.42 16 13 C -0.15 -2.24 5.40 -90.62 -0.49 -2.73 16 14 H 0.10 1.51 8.04 -51.93 -0.42 1.10 16 15 C 0.15 2.07 5.95 -4.04 -0.02 2.05 16 16 N -0.73 -7.91 5.56 -60.29 -0.33 -8.24 16 17 C 0.51 6.06 7.82 -10.98 -0.09 5.98 16 18 O -0.53 -8.73 16.03 5.56 0.09 -8.64 16 19 C -0.11 -0.86 5.78 -29.04 -0.17 -1.03 16 20 C -0.02 -0.19 4.33 -105.01 -0.45 -0.64 16 21 C -0.13 -1.27 9.51 -39.97 -0.38 -1.65 16 22 C -0.05 -0.40 10.09 -39.41 -0.40 -0.80 16 23 C -0.21 -2.00 6.33 -105.19 -0.67 -2.67 16 24 C 0.08 0.49 12.08 -16.61 -0.20 0.29 16 25 N -0.43 -3.01 7.18 30.84 0.22 -2.79 16 26 H 0.44 1.34 8.96 -182.70 -1.64 -0.30 16 27 N -0.31 -3.58 12.70 33.25 0.42 -3.16 16 28 C 0.11 1.32 7.49 -83.06 -0.62 0.69 16 29 C -0.09 -1.05 9.65 -39.40 -0.38 -1.43 16 30 C -0.17 -2.98 6.74 -89.29 -0.60 -3.58 16 31 H 0.10 1.65 8.12 -51.93 -0.42 1.23 16 32 C 0.15 3.16 7.03 -2.41 -0.02 3.15 16 33 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.09 2.41 6.50 -51.93 -0.34 2.08 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 0.95 7.94 -51.93 -0.41 0.54 16 38 H 0.40 3.32 8.40 -40.82 -0.34 2.98 16 39 H 0.11 0.59 8.07 -51.93 -0.42 0.17 16 40 H 0.11 0.63 8.06 -51.93 -0.42 0.21 16 41 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 42 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 43 H 0.19 0.30 8.06 -52.49 -0.42 -0.12 16 44 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 386.27 15.07 5.82 5.82 Total: -1.00 -36.90 386.27 -11.90 -48.80 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -7.76 Total: 1.60 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -5.36 Total: -8.39 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.34 Total: -56.05 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.09 Total: -8.64 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.90 -11.90 -48.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725314963.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.676 kcal (2) G-P(sol) polarization free energy of solvation -36.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds