Wall clock time and date at job start Tue Mar 31 2020 23:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99924 * 2 1 4 4 H 1.48502 * 109.46815 * 274.46057 * 3 2 1 5 5 H 1.48500 * 109.46898 * 34.45837 * 3 2 1 6 6 H 1.48495 * 109.47078 * 154.45511 * 3 2 1 7 7 C 1.38810 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99777 * 189.00875 * 7 2 1 9 9 N 1.36930 * 120.00157 * 9.01509 * 7 2 1 10 10 C 1.47827 * 127.86364 * 15.60659 * 9 7 2 11 11 C 1.54384 * 104.69249 * 140.39168 * 10 9 7 12 12 H 1.09004 * 118.18280 * 244.26453 * 11 10 9 13 13 C 1.52997 * 118.12635 * 87.25276 * 11 10 9 14 14 H 1.09006 * 117.44272 * 16.10960 * 13 11 10 15 15 C 1.53001 * 117.44567 * 160.85139 * 13 11 10 16 16 N 1.46502 * 109.47000 * 185.17098 * 15 13 11 17 17 C 1.34785 * 119.99694 * 180.02562 * 16 15 13 18 18 O 1.21280 * 119.99708 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99880 * 179.97438 * 17 16 15 20 20 C 1.50692 * 109.47046 * 180.02562 * 19 17 16 21 21 C 1.39690 * 119.09649 * 89.99876 * 20 19 17 22 22 C 1.35646 * 121.72454 * 179.97438 * 21 20 19 23 23 C 1.41128 * 119.53960 * 0.02562 * 22 21 20 24 24 C 1.38245 * 134.81393 * 179.97438 * 23 22 21 25 25 N 1.33985 * 107.90560 * 180.02562 * 24 23 22 26 26 H 0.97004 * 125.02423 * 180.02562 * 25 24 23 27 27 N 1.39960 * 109.95771 * 0.02562 * 25 24 23 28 28 C 1.32062 * 108.95571 * 359.97438 * 27 25 24 29 29 C 1.35641 * 119.09177 * 269.73061 * 20 19 17 30 30 C 1.53001 * 60.49740 * 268.47842 * 13 11 10 31 31 H 1.08996 * 119.53597 * 248.20987 * 30 13 11 32 32 C 1.48147 * 127.84015 * 195.59948 * 9 7 2 33 33 H 0.97002 * 120.00349 * 359.97438 * 1 2 3 34 34 H 1.09001 * 110.31793 * 21.60514 * 10 9 7 35 35 H 1.09004 * 110.42591 * 259.22487 * 10 9 7 36 36 H 1.09003 * 109.47179 * 305.16568 * 15 13 11 37 37 H 1.08996 * 109.47351 * 65.16761 * 15 13 11 38 38 H 0.96992 * 120.00519 * 359.97438 * 16 15 13 39 39 H 1.09003 * 109.46881 * 300.00008 * 19 17 16 40 40 H 1.08996 * 109.46997 * 59.99803 * 19 17 16 41 41 H 1.07996 * 119.13226 * 359.97438 * 21 20 19 42 42 H 1.08004 * 120.22555 * 180.02562 * 22 21 20 43 43 H 1.08001 * 126.05201 * 0.02634 * 24 23 22 44 44 H 1.08002 * 120.19407 * 0.02562 * 29 20 19 45 45 H 1.09007 * 110.40731 * 100.80870 * 32 9 7 46 46 H 1.09005 * 110.40520 * 338.38282 * 32 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4033 2.1009 -1.3959 5 1 1.4979 2.6236 0.7922 6 1 3.5916 1.4149 0.6037 7 6 2.0102 -1.2021 0.0005 8 1 3.0802 -1.2078 0.1470 9 7 1.3383 -2.3808 -0.1847 10 6 -0.0318 -2.5718 -0.7060 11 6 0.0640 -3.8186 -1.6114 12 1 -0.1236 -3.6958 -2.6781 13 6 -0.1193 -5.1940 -0.9667 14 1 -0.5684 -5.2277 0.0259 15 6 -0.4694 -6.3639 -1.8885 16 7 -0.7245 -7.5607 -1.0831 17 6 -1.0529 -8.7209 -1.6855 18 8 -1.1375 -8.7738 -2.8942 19 6 -1.3147 -9.9523 -0.8571 20 6 -1.6585 -11.1048 -1.7651 21 6 -0.6318 -11.9222 -2.2437 22 6 -0.8807 -12.9740 -3.0632 23 6 -2.2086 -13.2571 -3.4482 24 6 -2.8093 -14.2148 -4.2438 25 7 -4.1289 -13.9828 -4.2425 26 1 -4.7873 -14.5094 -4.7224 27 7 -4.4173 -12.8683 -3.4465 28 6 -3.2904 -12.3960 -2.9453 29 6 -2.9570 -11.3232 -2.0908 30 6 1.2851 -4.5986 -1.0854 31 1 2.0081 -5.0575 -1.7598 32 6 1.8195 -3.7544 0.0916 33 1 -0.4851 0.8400 0.0004 34 1 -0.3403 -1.7028 -1.2871 35 1 -0.7290 -2.7495 0.1129 36 1 -1.3607 -6.1176 -2.4656 37 1 0.3621 -6.5531 -2.5673 38 1 -0.6565 -7.5185 -0.1165 39 1 -0.4233 -10.1982 -0.2800 40 1 -2.1464 -9.7634 -0.1783 41 1 0.3869 -11.7111 -1.9535 42 1 -0.0682 -13.5904 -3.4187 43 1 -2.3044 -15.0095 -4.7728 44 1 -3.7304 -10.6771 -1.7026 45 1 1.4121 -4.1172 1.0353 46 1 2.9090 -3.7783 0.1127 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725314963.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:25 Heat of formation + Delta-G solvation = 90.794628 kcal Electronic energy + Delta-G solvation = -27273.956890 eV Core-core repulsion = 23358.700358 eV Total energy + Delta-G solvation = -3915.256532 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.15902 -40.94057 -40.22334 -38.24108 -36.27557 -34.93941 -33.44539 -32.94870 -32.61337 -29.86439 -29.58839 -28.86367 -28.23251 -26.40984 -24.39556 -22.94560 -22.43169 -21.81168 -21.61199 -20.92135 -20.76934 -18.96795 -18.83171 -18.01574 -17.70306 -17.17122 -16.75513 -16.50625 -16.15386 -15.91995 -15.76489 -15.44935 -15.18711 -14.88302 -14.82339 -14.59845 -14.35558 -14.13956 -13.75694 -13.34115 -13.17117 -12.96317 -12.85443 -12.74107 -12.66041 -12.57965 -12.40676 -12.26925 -11.95826 -11.91204 -11.75908 -11.27027 -11.22502 -11.07823 -10.86700 -10.67208 -10.52304 -9.97443 -9.56564 -8.89755 -8.55015 -7.91199 -5.27534 -0.26956 0.86073 1.46705 1.48503 1.51981 1.57682 1.73618 1.90825 2.21940 2.48171 2.75743 2.96877 3.27412 3.33898 3.65797 3.71020 3.73841 3.87146 3.91578 4.08613 4.20505 4.26884 4.30855 4.36282 4.43420 4.45444 4.58237 4.61570 4.67990 4.70359 4.75813 4.77278 4.85199 4.96422 5.04793 5.24484 5.27366 5.37005 5.46028 5.49665 5.53782 5.55054 5.60722 5.67566 5.75096 6.01350 6.19369 6.31929 6.63431 6.65910 7.02299 7.34998 7.69623 8.47719 9.22507 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.040524 B = 0.001545 C = 0.001521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.782862 B =18124.426255 C =18409.531639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.063 4.063 3 Si 0.980 3.020 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.265 1.265 7 C -0.241 4.241 8 H 0.081 0.919 9 N -0.621 5.621 10 C 0.189 3.811 11 C -0.181 4.181 12 H 0.109 0.891 13 C -0.106 4.106 14 H 0.112 0.888 15 C 0.164 3.836 16 N -0.715 5.715 17 C 0.514 3.486 18 O -0.582 6.582 19 C -0.099 4.099 20 C -0.017 4.017 21 C -0.164 4.164 22 C -0.037 4.037 23 C -0.243 4.243 24 C 0.113 3.887 25 N -0.418 5.418 26 H 0.458 0.542 27 N -0.361 5.361 28 C 0.081 3.919 29 C -0.130 4.130 30 C -0.158 4.158 31 H 0.123 0.877 32 C 0.149 3.851 33 H 0.249 0.751 34 H 0.050 0.950 35 H 0.003 0.997 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.418 0.582 39 H 0.140 0.860 40 H 0.127 0.873 41 H 0.140 0.860 42 H 0.156 0.844 43 H 0.241 0.759 44 H 0.119 0.881 45 H 0.030 0.970 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.943 -33.750 -4.838 34.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.257 4.257 3 Si 0.808 3.192 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.190 1.190 7 C -0.370 4.370 8 H 0.099 0.901 9 N -0.345 5.345 10 C 0.064 3.936 11 C -0.201 4.201 12 H 0.127 0.873 13 C -0.125 4.125 14 H 0.130 0.870 15 C 0.040 3.960 16 N -0.368 5.368 17 C 0.301 3.699 18 O -0.462 6.462 19 C -0.138 4.138 20 C -0.022 4.022 21 C -0.183 4.183 22 C -0.057 4.057 23 C -0.252 4.252 24 C -0.046 4.046 25 N -0.120 5.120 26 H 0.306 0.694 27 N -0.191 5.191 28 C -0.071 4.071 29 C -0.151 4.151 30 C -0.178 4.178 31 H 0.141 0.859 32 C 0.024 3.976 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.020 0.980 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.255 0.745 39 H 0.158 0.842 40 H 0.145 0.855 41 H 0.157 0.843 42 H 0.173 0.827 43 H 0.257 0.743 44 H 0.137 0.863 45 H 0.048 0.952 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.333 -33.342 -5.698 34.102 hybrid contribution 0.424 1.224 0.106 1.299 sum -3.909 -32.119 -5.593 32.835 Atomic orbital electron populations 1.70095 1.06539 1.25684 1.57248 1.25741 0.96492 1.01299 1.02155 0.85049 0.77951 0.78954 0.77294 1.21478 1.22044 1.18957 1.19407 0.91369 0.83684 1.42490 0.90091 1.45459 1.13831 1.01338 1.73872 1.20730 0.86091 0.93657 0.93151 1.23904 1.04958 0.91555 0.99730 0.87277 1.22413 0.97903 0.91867 1.00317 0.87020 1.20603 1.00560 0.82509 0.92343 1.45899 1.70503 1.08841 1.11536 1.21038 0.75490 0.85005 0.88338 1.90730 1.52960 1.85784 1.16733 1.20831 1.07083 0.88730 0.97188 1.19034 0.92421 0.94791 0.95965 1.20680 0.99296 0.96811 1.01503 1.20569 0.93819 0.96545 0.94760 1.20129 0.95773 1.01045 1.08296 1.23527 0.84314 0.99301 0.97415 1.46377 1.07831 1.22245 1.35514 0.69412 1.77597 1.21092 1.03838 1.16557 1.21183 0.91356 0.96978 0.97566 1.19778 0.96816 0.97432 1.01065 1.23900 0.90533 1.02115 1.01241 0.85878 1.21310 0.97722 0.84173 0.94440 0.94163 0.93112 0.97959 0.92032 0.91676 0.74485 0.84224 0.85468 0.84268 0.82665 0.74264 0.86282 0.95190 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.31 10.86 21.65 0.24 -57.08 16 2 C -0.06 -3.61 5.40 84.86 0.46 -3.15 16 3 Si 0.98 45.65 29.56 68.60 2.03 47.68 16 4 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.24 -13.53 10.35 84.03 0.87 -12.66 16 8 H 0.08 4.34 7.84 -2.91 -0.02 4.32 16 9 N -0.62 -32.02 3.37 -688.98 -2.32 -34.34 16 10 C 0.19 9.32 5.69 86.59 0.49 9.81 16 11 C -0.18 -6.73 6.85 -9.94 -0.07 -6.80 16 12 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 13 C -0.11 -2.97 5.40 -10.79 -0.06 -3.02 16 14 H 0.11 3.01 8.04 -2.38 -0.02 2.99 16 15 C 0.16 4.06 5.95 86.38 0.51 4.57 16 16 N -0.71 -13.82 5.56 -463.04 -2.57 -16.39 16 17 C 0.51 11.33 7.82 87.66 0.69 12.01 16 18 O -0.58 -18.78 16.03 -3.03 -0.05 -18.83 16 19 C -0.10 -1.40 5.78 29.10 0.17 -1.23 16 20 C -0.02 -0.34 4.33 -20.12 -0.09 -0.43 16 21 C -0.16 -2.82 9.51 22.02 0.21 -2.61 16 22 C -0.04 -0.57 10.09 22.38 0.23 -0.34 16 23 C -0.24 -4.36 6.33 -20.23 -0.13 -4.49 16 24 C 0.11 1.09 12.08 84.37 1.02 2.11 16 25 N -0.42 -5.28 7.18 -56.35 -0.40 -5.68 16 26 H 0.46 1.98 8.96 -213.41 -1.91 0.06 16 27 N -0.36 -8.59 12.70 -48.71 -0.62 -9.21 16 28 C 0.08 2.00 7.49 42.16 0.32 2.32 16 29 C -0.13 -3.08 9.65 22.38 0.22 -2.86 16 30 C -0.16 -5.17 6.74 -9.94 -0.07 -5.24 16 31 H 0.12 3.58 8.12 -2.39 -0.02 3.57 16 32 C 0.15 5.94 7.03 86.53 0.61 6.55 16 33 H 0.25 14.61 8.31 -92.71 -0.77 13.83 16 34 H 0.05 2.86 6.50 -2.39 -0.02 2.85 16 35 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 36 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.06 1.70 7.94 -2.39 -0.02 1.68 16 38 H 0.42 5.51 8.40 -92.71 -0.78 4.73 16 39 H 0.14 1.05 8.07 -2.39 -0.02 1.03 16 40 H 0.13 1.25 8.06 -2.39 -0.02 1.23 16 41 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 42 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 43 H 0.24 -0.53 8.06 -2.91 -0.02 -0.55 16 44 H 0.12 2.74 8.06 -2.91 -0.02 2.71 16 45 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 46 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 Total: -1.00 -85.41 386.27 0.00 -85.41 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -1.67 Total: 13.90 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 5.37 Total: -5.46 kcal Atomic # 7 Polarization: -117.01 SS G_CDS: -5.68 Total: -122.70 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.05 Total: -18.83 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -85.41 0.00 -85.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725314963.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.203 kcal (2) G-P(sol) polarization free energy of solvation -85.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds