Wall clock time and date at job start Tue Mar 31 2020 22:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46491 * 120.00147 * 2 1 4 4 C 1.53006 * 109.47161 * 270.00071 * 3 2 1 5 5 H 1.09003 * 109.46889 * 304.99743 * 4 3 2 6 6 O 1.42901 * 109.47188 * 64.99694 * 4 3 2 7 7 C 1.53002 * 109.47202 * 184.99684 * 4 3 2 8 8 N 1.46503 * 109.46837 * 179.97438 * 7 4 3 9 9 C 1.36932 * 119.99740 * 180.02562 * 8 7 4 10 10 H 1.08004 * 120.00117 * 359.97438 * 9 8 7 11 11 C 1.38811 * 120.00087 * 180.02562 * 9 8 7 12 12 N 1.31622 * 120.00119 * 179.97438 * 11 9 8 13 13 Si 1.86807 * 119.99803 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.46959 * 90.00318 * 13 11 9 15 15 H 1.48495 * 109.47027 * 210.00041 * 13 11 9 16 16 H 1.48495 * 109.46859 * 330.00229 * 13 11 9 17 17 C 1.34777 * 120.00026 * 179.97438 * 2 1 3 18 18 O 1.21284 * 120.00043 * 179.97438 * 17 2 1 19 19 C 1.50700 * 120.00111 * 0.02562 * 17 2 1 20 20 C 1.53004 * 109.47443 * 179.97438 * 19 17 2 21 21 O 1.42893 * 109.47267 * 180.02562 * 20 19 17 22 22 C 1.35956 * 117.00026 * 179.97438 * 21 20 19 23 23 C 1.38657 * 120.06128 * 359.97438 * 22 21 20 24 24 C 1.38184 * 119.96964 * 180.02562 * 23 22 21 25 25 C 1.38265 * 120.09281 * 359.97438 * 24 23 22 26 26 C 1.38248 * 120.12705 * 0.02562 * 25 24 23 27 27 C 1.38332 * 120.03366 * 359.97438 * 26 25 24 28 28 F 1.35103 * 120.05240 * 180.02562 * 27 26 25 29 29 H 1.08995 * 109.47081 * 270.00039 * 1 2 3 30 30 H 1.08998 * 109.47092 * 30.00545 * 1 2 3 31 31 H 1.09003 * 109.46928 * 150.00086 * 1 2 3 32 32 H 1.09005 * 109.47481 * 29.99504 * 3 2 1 33 33 H 1.08994 * 109.47479 * 149.99902 * 3 2 1 34 34 H 0.96703 * 114.00063 * 60.00111 * 6 4 3 35 35 H 1.09003 * 109.47246 * 299.99840 * 7 4 3 36 36 H 1.09002 * 109.47000 * 60.00072 * 7 4 3 37 37 H 0.97004 * 120.00082 * 0.02562 * 8 7 4 38 38 H 0.97000 * 119.99952 * 179.97438 * 12 11 9 39 39 H 1.09007 * 109.47324 * 59.99956 * 19 17 2 40 40 H 1.09001 * 109.47308 * 299.99976 * 19 17 2 41 41 H 1.08994 * 109.46599 * 59.99619 * 20 19 17 42 42 H 1.09001 * 109.46881 * 300.00277 * 20 19 17 43 43 H 1.08004 * 120.01774 * 0.03769 * 23 22 21 44 44 H 1.08000 * 119.95526 * 180.27319 * 24 23 22 45 45 H 1.08001 * 119.93128 * 179.97438 * 25 24 23 46 46 H 1.07998 * 119.98480 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7103 -1.4426 5 1 2.9643 0.9130 -1.9816 6 8 1.2060 1.9934 -2.0815 7 6 3.3238 2.9680 -1.4444 8 7 3.5684 3.3906 -2.8257 9 6 4.3294 4.5007 -3.0774 10 1 4.7489 5.0651 -2.2577 11 6 4.5608 4.9014 -4.3862 12 7 5.2919 5.9689 -4.6281 13 14 3.8346 3.9257 -5.8040 14 1 2.4919 4.4642 -6.1390 15 1 4.7228 4.0383 -6.9886 16 1 3.7118 2.4989 -5.4112 17 6 2.1389 -1.1672 0.0005 18 8 3.3517 -1.1672 0.0001 19 6 1.3854 -2.4723 0.0005 20 6 2.3797 -3.6353 0.0005 21 8 1.6652 -4.8728 -0.0001 22 6 2.4056 -6.0130 -0.0007 23 6 3.7904 -5.9420 -0.0013 24 6 4.5411 -7.1021 -0.0024 25 6 3.9134 -8.3340 -0.0025 26 6 2.5330 -8.4095 -0.0019 27 6 1.7763 -7.2514 -0.0008 28 9 0.4273 -7.3247 0.0003 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1384 0.5138 34 1 0.6955 2.6949 -1.6543 35 1 2.8120 3.7654 -0.9054 36 1 4.2746 2.7521 -0.9571 37 1 3.1913 2.8839 -3.5619 38 1 5.4539 6.2486 -5.5427 39 1 0.7591 -2.5303 -0.8897 40 1 0.7584 -2.5299 0.8903 41 1 3.0063 -3.5775 0.8904 42 1 3.0063 -3.5775 -0.8895 43 1 4.2820 -4.9803 -0.0006 44 1 5.6197 -7.0465 0.0016 45 1 4.5027 -9.2391 -0.0038 46 1 2.0451 -9.3729 -0.0016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725713378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:21 Heat of formation + Delta-G solvation = -150.254795 kcal Electronic energy + Delta-G solvation = -28680.195876 eV Core-core repulsion = 24291.424681 eV Total energy + Delta-G solvation = -4388.771195 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.85385 -41.40864 -40.83523 -39.00909 -38.45347 -36.53303 -35.87663 -33.61505 -33.36309 -31.70404 -31.31906 -30.44618 -28.03922 -27.28586 -25.60513 -24.15675 -23.52559 -23.00933 -22.68685 -20.32017 -19.83855 -19.54748 -18.42254 -17.87722 -17.73753 -17.61777 -17.55855 -17.05364 -16.65308 -16.54345 -16.35201 -16.10728 -15.84349 -15.45938 -15.41936 -15.10775 -14.95868 -14.48086 -14.37238 -13.99357 -13.88267 -13.82168 -13.70515 -13.34457 -13.26733 -13.02118 -12.91875 -12.85145 -12.66119 -12.46561 -12.31086 -12.07513 -11.98029 -11.89084 -11.88139 -11.33316 -11.05410 -10.93317 -9.98479 -9.61249 -9.34515 -9.28062 -8.06860 -5.39913 0.08931 0.22207 1.35939 1.37500 1.45332 1.46911 1.58625 2.24909 2.44604 2.56864 3.18253 3.23759 3.33882 3.45512 3.60275 3.68683 3.81014 3.82465 3.92774 3.99303 4.08563 4.15682 4.22043 4.28725 4.30587 4.37253 4.48608 4.53455 4.60150 4.68597 4.69217 4.82179 4.88947 4.94390 5.02621 5.06485 5.15127 5.22934 5.40645 5.44023 5.65294 5.70318 6.17031 6.17765 6.28735 6.83777 7.03249 7.04193 7.80378 7.98653 9.14336 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015284 B = 0.001973 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.520744 B =14189.944465 C =15016.844203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.602 5.602 3 C 0.095 3.905 4 C 0.101 3.899 5 H 0.071 0.929 6 O -0.562 6.562 7 C 0.125 3.875 8 N -0.754 5.754 9 C -0.236 4.236 10 H 0.060 0.940 11 C -0.062 4.062 12 N -0.981 5.981 13 Si 0.958 3.042 14 H -0.275 1.275 15 H -0.294 1.294 16 H -0.264 1.264 17 C 0.511 3.489 18 O -0.584 6.584 19 C -0.128 4.128 20 C 0.076 3.924 21 O -0.322 6.322 22 C 0.078 3.922 23 C -0.192 4.192 24 C -0.088 4.088 25 C -0.124 4.124 26 C -0.115 4.115 27 C 0.038 3.962 28 F -0.147 7.147 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.388 0.612 35 H 0.047 0.953 36 H 0.028 0.972 37 H 0.366 0.634 38 H 0.259 0.741 39 H 0.120 0.880 40 H 0.129 0.871 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.141 0.859 44 H 0.157 0.843 45 H 0.167 0.833 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.157 -29.878 15.201 35.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.334 5.334 3 C -0.029 4.029 4 C 0.040 3.960 5 H 0.089 0.911 6 O -0.369 6.369 7 C -0.002 4.002 8 N -0.400 5.400 9 C -0.367 4.367 10 H 0.078 0.922 11 C -0.254 4.254 12 N -0.631 5.631 13 Si 0.785 3.215 14 H -0.201 1.201 15 H -0.221 1.221 16 H -0.189 1.189 17 C 0.300 3.700 18 O -0.464 6.464 19 C -0.168 4.168 20 C 0.001 3.999 21 O -0.237 6.237 22 C 0.032 3.968 23 C -0.211 4.211 24 C -0.106 4.106 25 C -0.142 4.142 26 C -0.134 4.134 27 C 0.018 3.982 28 F -0.126 7.126 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.136 0.864 33 H 0.100 0.900 34 H 0.237 0.763 35 H 0.064 0.936 36 H 0.046 0.954 37 H 0.199 0.801 38 H 0.068 0.932 39 H 0.138 0.862 40 H 0.147 0.853 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.159 0.841 44 H 0.175 0.825 45 H 0.185 0.815 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -11.508 -30.120 14.889 35.516 hybrid contribution -0.160 0.716 -0.784 1.074 sum -11.668 -29.404 14.106 34.637 Atomic orbital electron populations 1.22169 0.76474 1.05138 1.03410 1.47777 1.08792 1.04782 1.72004 1.22051 0.99143 0.86034 0.95671 1.22246 0.84592 0.95246 0.93891 0.91099 1.86554 1.31938 1.60150 1.58283 1.21435 0.97581 0.95315 0.85895 1.42605 1.62289 1.31468 1.03671 1.19065 1.22832 1.01973 0.92855 0.92203 1.25482 1.01041 0.98992 0.99892 1.69874 1.45178 1.28031 1.20014 0.85372 0.77955 0.79079 0.79070 1.20071 1.22052 1.18916 1.20755 0.87467 0.86312 0.75452 1.90732 1.15785 1.88066 1.51838 1.21439 0.98888 0.88627 1.07801 1.22462 0.94331 0.80389 1.02714 1.85986 1.35929 1.12844 1.88902 1.19251 0.91422 0.85627 1.00500 1.21466 0.91264 1.01718 1.06630 1.21461 1.01714 0.91259 0.96145 1.21377 0.93201 0.99311 1.00307 1.21377 0.94999 0.96950 1.00066 1.17407 0.77133 0.92523 1.11135 1.91457 1.29461 1.97081 1.94617 0.90211 0.89507 0.89720 0.86416 0.90006 0.76292 0.93554 0.95441 0.80063 0.93237 0.86212 0.85252 0.90982 0.91850 0.84103 0.82499 0.81527 0.81892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.72 10.06 127.77 1.29 2.01 16 2 N -0.60 -11.21 2.84 -846.77 -2.40 -13.61 16 3 C 0.09 2.02 5.06 86.38 0.44 2.46 16 4 C 0.10 2.93 3.30 30.60 0.10 3.03 16 5 H 0.07 2.50 8.14 -2.39 -0.02 2.49 16 6 O -0.56 -14.99 11.91 -148.98 -1.77 -16.77 16 7 C 0.12 4.61 5.92 86.38 0.51 5.12 16 8 N -0.75 -36.38 5.30 -343.44 -1.82 -38.20 16 9 C -0.24 -13.81 10.47 84.03 0.88 -12.93 16 10 H 0.06 3.78 8.06 -2.91 -0.02 3.75 16 11 C -0.06 -3.77 5.50 84.86 0.47 -3.30 16 12 N -0.98 -63.76 13.97 21.65 0.30 -63.46 16 13 Si 0.96 47.57 27.74 68.60 1.90 49.48 16 14 H -0.27 -13.17 7.11 99.48 0.71 -12.47 16 15 H -0.29 -14.62 7.11 99.48 0.71 -13.92 16 16 H -0.26 -12.39 6.52 99.48 0.65 -11.74 16 17 C 0.51 11.39 7.67 87.66 0.67 12.06 16 18 O -0.58 -18.09 15.56 -3.04 -0.05 -18.13 16 19 C -0.13 -2.00 4.62 29.85 0.14 -1.87 16 20 C 0.08 1.46 4.03 71.98 0.29 1.75 16 21 O -0.32 -6.93 10.00 -93.06 -0.93 -7.87 16 22 C 0.08 1.60 6.69 22.53 0.15 1.75 16 23 C -0.19 -3.25 9.04 22.36 0.20 -3.05 16 24 C -0.09 -1.05 10.04 22.26 0.22 -0.83 16 25 C -0.12 -1.23 10.04 22.28 0.22 -1.01 16 26 C -0.12 -1.50 10.02 22.29 0.22 -1.28 16 27 C 0.04 0.74 7.31 22.45 0.16 0.90 16 28 F -0.15 -3.33 17.11 44.97 0.77 -2.56 16 29 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.09 0.86 7.11 -2.39 -0.02 0.84 16 31 H 0.08 0.70 6.44 -2.39 -0.02 0.69 16 32 H 0.12 1.73 8.07 -2.38 -0.02 1.71 16 33 H 0.08 2.03 7.42 -2.39 -0.02 2.02 16 34 H 0.39 7.31 9.04 -74.05 -0.67 6.64 16 35 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.37 17.56 5.41 -92.71 -0.50 17.05 16 38 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 39 H 0.12 1.59 7.40 -2.38 -0.02 1.57 16 40 H 0.13 1.40 8.11 -2.39 -0.02 1.38 16 41 H 0.07 1.37 7.62 -2.39 -0.02 1.36 16 42 H 0.06 1.33 7.62 -2.39 -0.02 1.31 16 43 H 0.14 2.30 6.30 -2.91 -0.02 2.28 16 44 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 45 H 0.17 0.55 8.06 -2.91 -0.02 0.53 16 46 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -81.91 388.59 1.76 -80.15 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: -0.21 Total: 26.14 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 5.97 Total: 4.83 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -3.92 Total: -115.27 kcal Atomic # 8 Polarization: -40.02 SS G_CDS: -2.75 Total: -42.77 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.77 Total: -2.56 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 1.90 Total: 49.48 kcal Total: -81.91 1.76 -80.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725713378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.102 kcal (2) G-P(sol) polarization free energy of solvation -81.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds