Wall clock time and date at job start Tue Mar 31 2020 23:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86810 * 119.99772 * 2 1 4 4 H 1.48507 * 109.46969 * 269.99938 * 3 2 1 5 5 H 1.48498 * 109.47061 * 29.99787 * 3 2 1 6 6 H 1.48501 * 109.46697 * 150.00258 * 3 2 1 7 7 C 1.38809 * 120.00515 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99591 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00521 * 179.97438 * 7 2 1 10 10 C 1.46503 * 120.00159 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47230 * 180.02562 * 10 9 7 12 12 H 1.09006 * 109.49228 * 55.07181 * 11 10 9 13 13 C 1.53042 * 109.52633 * 175.14634 * 11 10 9 14 14 C 1.53032 * 109.53965 * 181.33425 * 13 11 10 15 15 C 1.53629 * 109.24272 * 298.51811 * 14 13 11 16 16 N 1.46923 * 108.54544 * 54.85649 * 15 14 13 17 17 C 1.34775 * 120.63086 * 126.36977 * 16 15 14 18 18 O 1.21544 * 119.99493 * 187.48438 * 17 16 15 19 19 C 1.47888 * 120.00051 * 7.49211 * 17 16 15 20 20 N 1.32139 * 120.03635 * 7.50573 * 19 17 16 21 21 C 1.31980 * 122.76702 * 179.97438 * 20 19 17 22 22 C 1.37781 * 121.73090 * 0.02562 * 21 20 19 23 23 C 1.40383 * 118.72995 * 359.97438 * 22 21 20 24 24 C 1.40641 * 122.28805 * 179.97438 * 23 22 21 25 25 C 1.36640 * 117.95745 * 180.02562 * 24 23 22 26 26 C 1.39396 * 119.92307 * 359.96184 * 25 24 23 27 27 N 1.31210 * 121.85481 * 0.03631 * 26 25 24 28 28 C 1.33254 * 121.21835 * 359.97438 * 27 26 25 29 29 C 1.46932 * 118.73327 * 306.09369 * 16 15 14 30 30 H 0.97002 * 120.00266 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99815 * 0.02562 * 9 7 2 32 32 H 1.09005 * 109.46961 * 60.01028 * 10 9 7 33 33 H 1.08995 * 109.47126 * 300.00588 * 10 9 7 34 34 H 1.08995 * 109.45834 * 301.35694 * 13 11 10 35 35 H 1.09001 * 109.45144 * 61.33003 * 13 11 10 36 36 H 1.09000 * 109.50029 * 58.58990 * 14 13 11 37 37 H 1.08996 * 109.50033 * 178.65104 * 14 13 11 38 38 H 1.09000 * 109.73522 * 295.11456 * 15 14 13 39 39 H 1.09009 * 109.66201 * 174.55003 * 15 14 13 40 40 H 1.07997 * 119.13094 * 180.02562 * 21 20 19 41 41 H 1.08002 * 120.63313 * 179.97438 * 22 21 20 42 42 H 1.08001 * 121.01802 * 0.02562 * 24 23 22 43 43 H 1.07997 * 120.03698 * 179.97438 * 25 24 23 44 44 H 1.07997 * 119.07465 * 180.02562 * 26 25 24 45 45 H 1.09005 * 109.57678 * 173.65019 * 29 16 15 46 46 H 1.08997 * 109.58536 * 293.92627 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 0.0011 11 6 5.6164 -2.1912 0.0009 12 1 5.8665 -1.5455 0.8428 13 6 6.3820 -3.5106 0.1241 14 6 7.8857 -3.2287 0.1574 15 6 8.3026 -2.5489 -1.1558 16 7 7.4692 -1.3544 -1.3486 17 6 8.0347 -0.1501 -1.5640 18 8 7.3444 0.8500 -1.5864 19 6 9.4949 -0.0456 -1.7732 20 7 10.2253 -1.1398 -1.8972 21 6 11.5312 -1.1094 -2.0858 22 6 12.2243 0.0787 -2.1658 23 6 11.5145 1.2836 -2.0430 24 6 12.1463 2.5382 -2.1125 25 6 11.3697 3.6547 -1.9810 26 6 9.9954 3.5268 -1.7855 27 7 9.4113 2.3536 -1.7215 28 6 10.1113 1.2261 -1.8419 29 6 6.0076 -1.4988 -1.3083 30 1 -0.4851 0.8400 -0.0004 31 1 3.8646 -0.3620 -0.0004 32 1 3.8486 -3.0433 -0.8882 33 1 3.8491 -3.0414 0.8918 34 1 6.0870 -4.0171 1.0431 35 1 6.1506 -4.1458 -0.7310 36 1 8.1145 -2.5733 0.9977 37 1 8.4294 -4.1668 0.2692 38 1 8.1549 -3.2360 -1.9890 39 1 9.3516 -2.2577 -1.1011 40 1 12.0707 -2.0403 -2.1799 41 1 13.2932 0.0829 -2.3202 42 1 13.2126 2.6166 -2.2652 43 1 11.8200 4.6351 -2.0286 44 1 9.3946 4.4184 -1.6836 45 1 5.5419 -0.5143 -1.3545 46 1 5.6763 -2.0997 -2.1552 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731519173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:47 Heat of formation + Delta-G solvation = 73.861806 kcal Electronic energy + Delta-G solvation = -29405.585580 eV Core-core repulsion = 25489.594786 eV Total energy + Delta-G solvation = -3915.990794 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.76948 -39.89223 -38.39152 -37.48194 -34.97144 -34.13269 -32.87945 -31.89499 -31.61676 -30.94414 -29.96483 -26.49967 -25.68952 -24.95888 -24.52175 -23.28749 -22.75132 -21.16512 -20.54633 -19.60689 -18.98218 -17.94948 -17.58095 -17.25798 -16.56078 -15.92159 -15.66022 -15.17969 -14.96227 -14.75420 -14.57737 -14.33684 -14.27914 -13.84310 -13.58151 -13.54644 -13.30879 -13.12813 -12.96539 -12.69824 -12.54787 -12.49066 -12.27929 -11.56456 -11.37906 -11.20223 -11.00826 -10.80154 -10.64166 -10.40736 -10.23074 -10.14249 -9.97583 -9.84896 -9.67336 -9.46572 -9.07222 -8.88344 -8.78144 -8.36941 -7.11324 -5.66207 -3.01105 -0.47956 0.23549 1.25668 2.33424 2.91244 3.02424 3.52926 3.58215 3.61989 3.68141 3.75221 3.84126 3.97597 4.15024 4.26838 4.37331 4.66326 4.72602 4.75166 4.91459 4.94442 5.06533 5.07763 5.14508 5.16093 5.28118 5.43010 5.48348 5.60976 5.63764 5.65710 5.71234 5.82185 5.95169 5.96115 6.03952 6.08831 6.14956 6.18367 6.33942 6.44741 6.46225 6.73558 6.80394 6.88916 7.15414 7.48572 7.60520 8.10090 8.28575 8.53023 9.32769 10.05859 10.25663 11.52126 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012800 B = 0.003380 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.026121 B = 8281.796320 C =10274.578198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.005 3.995 3 Si 0.881 3.119 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.242 4.242 8 H 0.090 0.910 9 N -0.757 5.757 10 C 0.165 3.835 11 C -0.110 4.110 12 H 0.072 0.928 13 C -0.112 4.112 14 C -0.134 4.134 15 C 0.069 3.931 16 N -0.592 5.592 17 C 0.558 3.442 18 O -0.490 6.490 19 C 0.152 3.848 20 N -0.434 5.434 21 C 0.066 3.934 22 C -0.123 4.123 23 C -0.083 4.083 24 C -0.066 4.066 25 C -0.153 4.153 26 C 0.134 3.866 27 N -0.420 5.420 28 C 0.106 3.894 29 C 0.118 3.882 30 H 0.258 0.742 31 H 0.362 0.638 32 H 0.029 0.971 33 H 0.030 0.970 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.145 0.855 40 H 0.168 0.832 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.167 0.833 45 H 0.095 0.905 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.080 -0.458 -4.872 34.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.191 4.191 3 Si 0.711 3.289 4 H -0.208 1.208 5 H -0.218 1.218 6 H -0.201 1.201 7 C -0.372 4.372 8 H 0.108 0.892 9 N -0.403 5.403 10 C 0.037 3.963 11 C -0.130 4.130 12 H 0.091 0.909 13 C -0.150 4.150 14 C -0.172 4.172 15 C -0.054 4.054 16 N -0.325 5.325 17 C 0.342 3.658 18 O -0.362 6.362 19 C -0.001 4.001 20 N -0.147 5.147 21 C -0.079 4.079 22 C -0.143 4.143 23 C -0.090 4.090 24 C -0.092 4.092 25 C -0.174 4.174 26 C -0.040 4.040 27 N -0.127 5.127 28 C -0.018 4.018 29 C -0.003 4.003 30 H 0.068 0.932 31 H 0.196 0.804 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.161 0.839 40 H 0.185 0.815 41 H 0.164 0.836 42 H 0.164 0.836 43 H 0.162 0.838 44 H 0.184 0.816 45 H 0.114 0.886 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 32.204 -1.023 -4.735 32.566 hybrid contribution 1.914 1.977 -0.153 2.756 sum 34.118 0.954 -4.888 34.479 Atomic orbital electron populations 1.69707 1.05110 1.25762 1.57881 1.24645 0.95212 0.97199 1.02016 0.86591 0.79249 0.84874 0.78171 1.20842 1.21811 1.20138 1.19049 0.80674 0.94670 1.42823 0.89243 1.42789 1.04090 1.02331 1.91104 1.20618 0.87482 0.89368 0.98784 1.21726 0.96742 0.96805 0.97693 0.90907 1.21523 0.94275 0.96989 1.02251 1.22023 0.96673 1.00410 0.98120 1.23124 0.99431 0.86332 0.96515 1.48018 1.07565 1.07388 1.69531 1.17629 0.85220 0.83862 0.79098 1.90906 1.61502 1.35027 1.48772 1.21672 0.94916 0.87195 0.96268 1.67437 1.07810 1.29061 1.10436 1.22772 0.89781 0.98516 0.96795 1.22351 1.01281 0.91881 0.98820 1.18989 0.94038 0.95436 1.00556 1.21422 1.00652 0.90826 0.96265 1.22168 0.95490 1.00198 0.99522 1.23402 0.92403 0.96079 0.92137 1.68343 1.37759 0.97296 1.09315 1.19447 0.89774 0.93570 0.99043 1.21767 0.77925 1.03048 0.97581 0.93155 0.80441 0.95352 0.95254 0.91642 0.91672 0.92098 0.91103 0.91894 0.83908 0.81462 0.83596 0.83649 0.83769 0.81569 0.88642 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.70 13.97 55.49 0.78 -29.92 16 2 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 24.04 27.74 -169.99 -4.71 19.33 16 4 H -0.28 -7.72 7.11 56.52 0.40 -7.32 16 5 H -0.29 -7.93 7.11 56.52 0.40 -7.53 16 6 H -0.28 -7.31 6.52 56.52 0.37 -6.94 16 7 C -0.24 -7.23 10.47 -15.06 -0.16 -7.39 16 8 H 0.09 2.81 8.06 -52.48 -0.42 2.39 16 9 N -0.76 -19.29 5.18 -59.91 -0.31 -19.60 16 10 C 0.17 3.36 5.66 -4.04 -0.02 3.34 16 11 C -0.11 -1.85 2.37 -90.50 -0.21 -2.07 16 12 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 13 C -0.11 -1.46 5.17 -26.69 -0.14 -1.60 16 14 C -0.13 -1.51 6.10 -26.39 -0.16 -1.67 16 15 C 0.07 0.82 5.95 -3.48 -0.02 0.80 16 16 N -0.59 -9.24 2.97 -173.60 -0.51 -9.76 16 17 C 0.56 9.62 7.65 -12.31 -0.09 9.53 16 18 O -0.49 -10.32 14.68 5.33 0.08 -10.24 16 19 C 0.15 2.12 6.67 -82.55 -0.55 1.57 16 20 N -0.43 -4.69 6.02 -9.55 -0.06 -4.75 16 21 C 0.07 0.48 11.12 -17.66 -0.20 0.28 16 22 C -0.12 -0.79 9.93 -38.94 -0.39 -1.18 16 23 C -0.08 -0.76 5.75 -106.79 -0.61 -1.37 16 24 C -0.07 -0.42 9.94 -39.25 -0.39 -0.81 16 25 C -0.15 -0.99 10.03 -39.73 -0.40 -1.39 16 26 C 0.13 1.31 11.14 -17.39 -0.19 1.12 16 27 N -0.42 -6.06 8.52 -10.75 -0.09 -6.15 16 28 C 0.11 1.41 6.61 -84.62 -0.56 0.85 16 29 C 0.12 2.07 5.53 -3.71 -0.02 2.05 16 30 H 0.26 8.07 8.31 -40.82 -0.34 7.73 16 31 H 0.36 9.32 4.75 -40.82 -0.19 9.13 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.14 1.59 3.94 -87.60 -0.35 1.24 16 40 H 0.17 0.60 8.06 -52.49 -0.42 0.17 16 41 H 0.15 0.39 8.06 -52.49 -0.42 -0.03 16 42 H 0.15 0.41 8.06 -52.49 -0.42 -0.01 16 43 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 44 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 45 H 0.10 1.99 6.20 -51.93 -0.32 1.66 16 46 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 370.24 15.07 5.58 5.58 Total: -1.00 -38.66 370.24 -9.84 -48.50 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -6.37 Total: 4.89 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -4.22 Total: 2.13 kcal Atomic # 7 Polarization: -69.99 SS G_CDS: -0.20 Total: -70.19 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 14 Polarization: 24.04 SS G_CDS: -4.71 Total: 19.33 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -38.66 -9.84 -48.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731519173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.366 kcal (2) G-P(sol) polarization free energy of solvation -38.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds