Wall clock time and date at job start Tue Mar 31 2020 23:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86810 * 119.99772 * 2 1 4 4 H 1.48507 * 109.46969 * 269.99938 * 3 2 1 5 5 H 1.48498 * 109.47061 * 29.99787 * 3 2 1 6 6 H 1.48501 * 109.46697 * 150.00258 * 3 2 1 7 7 C 1.38809 * 120.00515 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99591 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00521 * 179.97438 * 7 2 1 10 10 C 1.46503 * 120.00159 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47230 * 180.02562 * 10 9 7 12 12 H 1.09006 * 109.49228 * 55.07181 * 11 10 9 13 13 C 1.53042 * 109.52633 * 175.14634 * 11 10 9 14 14 C 1.53032 * 109.53965 * 181.33425 * 13 11 10 15 15 C 1.53629 * 109.24272 * 298.51811 * 14 13 11 16 16 N 1.46923 * 108.54544 * 54.85649 * 15 14 13 17 17 C 1.34775 * 120.63086 * 126.36977 * 16 15 14 18 18 O 1.21544 * 119.99493 * 187.48438 * 17 16 15 19 19 C 1.47888 * 120.00051 * 7.49211 * 17 16 15 20 20 N 1.32139 * 120.03635 * 7.50573 * 19 17 16 21 21 C 1.31980 * 122.76702 * 179.97438 * 20 19 17 22 22 C 1.37781 * 121.73090 * 0.02562 * 21 20 19 23 23 C 1.40383 * 118.72995 * 359.97438 * 22 21 20 24 24 C 1.40641 * 122.28805 * 179.97438 * 23 22 21 25 25 C 1.36640 * 117.95745 * 180.02562 * 24 23 22 26 26 C 1.39396 * 119.92307 * 359.96184 * 25 24 23 27 27 N 1.31210 * 121.85481 * 0.03631 * 26 25 24 28 28 C 1.33254 * 121.21835 * 359.97438 * 27 26 25 29 29 C 1.46932 * 118.73327 * 306.09369 * 16 15 14 30 30 H 0.97002 * 120.00266 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99815 * 0.02562 * 9 7 2 32 32 H 1.09005 * 109.46961 * 60.01028 * 10 9 7 33 33 H 1.08995 * 109.47126 * 300.00588 * 10 9 7 34 34 H 1.08995 * 109.45834 * 301.35694 * 13 11 10 35 35 H 1.09001 * 109.45144 * 61.33003 * 13 11 10 36 36 H 1.09000 * 109.50029 * 58.58990 * 14 13 11 37 37 H 1.08996 * 109.50033 * 178.65104 * 14 13 11 38 38 H 1.09000 * 109.73522 * 295.11456 * 15 14 13 39 39 H 1.09009 * 109.66201 * 174.55003 * 15 14 13 40 40 H 1.07997 * 119.13094 * 180.02562 * 21 20 19 41 41 H 1.08002 * 120.63313 * 179.97438 * 22 21 20 42 42 H 1.08001 * 121.01802 * 0.02562 * 24 23 22 43 43 H 1.07997 * 120.03698 * 179.97438 * 25 24 23 44 44 H 1.07997 * 119.07465 * 180.02562 * 26 25 24 45 45 H 1.09005 * 109.57678 * 173.65019 * 29 16 15 46 46 H 1.08997 * 109.58536 * 293.92627 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 0.0011 11 6 5.6164 -2.1912 0.0009 12 1 5.8665 -1.5455 0.8428 13 6 6.3820 -3.5106 0.1241 14 6 7.8857 -3.2287 0.1574 15 6 8.3026 -2.5489 -1.1558 16 7 7.4692 -1.3544 -1.3486 17 6 8.0347 -0.1501 -1.5640 18 8 7.3444 0.8500 -1.5864 19 6 9.4949 -0.0456 -1.7732 20 7 10.2253 -1.1398 -1.8972 21 6 11.5312 -1.1094 -2.0858 22 6 12.2243 0.0787 -2.1658 23 6 11.5145 1.2836 -2.0430 24 6 12.1463 2.5382 -2.1125 25 6 11.3697 3.6547 -1.9810 26 6 9.9954 3.5268 -1.7855 27 7 9.4113 2.3536 -1.7215 28 6 10.1113 1.2261 -1.8419 29 6 6.0076 -1.4988 -1.3083 30 1 -0.4851 0.8400 -0.0004 31 1 3.8646 -0.3620 -0.0004 32 1 3.8486 -3.0433 -0.8882 33 1 3.8491 -3.0414 0.8918 34 1 6.0870 -4.0171 1.0431 35 1 6.1506 -4.1458 -0.7310 36 1 8.1145 -2.5733 0.9977 37 1 8.4294 -4.1668 0.2692 38 1 8.1549 -3.2360 -1.9890 39 1 9.3516 -2.2577 -1.1011 40 1 12.0707 -2.0403 -2.1799 41 1 13.2932 0.0829 -2.3202 42 1 13.2126 2.6166 -2.2652 43 1 11.8200 4.6351 -2.0286 44 1 9.3946 4.4184 -1.6836 45 1 5.5419 -0.5143 -1.3545 46 1 5.6763 -2.0997 -2.1552 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731519173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:45 Heat of formation + Delta-G solvation = 46.298164 kcal Electronic energy + Delta-G solvation = -29406.780829 eV Core-core repulsion = 25489.594786 eV Total energy + Delta-G solvation = -3917.186043 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.49908 -40.98419 -39.13137 -38.78788 -36.73227 -34.91215 -34.37972 -33.27755 -32.58414 -31.94489 -31.36461 -27.72884 -27.10435 -25.83056 -25.17503 -24.54578 -24.08981 -22.62661 -21.78885 -20.63201 -19.82315 -19.63420 -18.62756 -18.18374 -17.45571 -16.97986 -16.71505 -16.66223 -16.16083 -15.89581 -15.71882 -15.45437 -15.23903 -15.18978 -14.95610 -14.48449 -14.31036 -14.20899 -14.12761 -14.02650 -13.77394 -13.74134 -13.38719 -13.21992 -12.98512 -12.67102 -12.24024 -12.09989 -11.92956 -11.91441 -11.82782 -11.67590 -11.41705 -11.36503 -11.05595 -10.54687 -10.38523 -9.91478 -9.71075 -9.42499 -9.34156 -8.09381 -5.40681 -1.16191 -0.38063 0.60675 1.29593 1.33623 1.39489 1.59846 1.83078 2.09167 2.40202 2.91114 3.00679 3.16088 3.22685 3.34305 3.50862 3.61762 3.70169 3.83247 3.87282 3.90895 3.97005 4.12988 4.20145 4.23916 4.33369 4.44479 4.50112 4.55265 4.61351 4.67634 4.73710 4.81136 4.92293 4.93162 4.99551 5.07065 5.09484 5.10945 5.20207 5.27583 5.39516 5.47606 5.57720 5.70510 5.76647 6.16221 6.33192 6.52619 6.89158 7.01335 7.11498 7.79005 7.96189 9.12324 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012800 B = 0.003380 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.026121 B = 8281.796320 C =10274.578198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.054 4.054 3 Si 0.942 3.058 4 H -0.285 1.285 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.229 4.229 8 H 0.067 0.933 9 N -0.763 5.763 10 C 0.162 3.838 11 C -0.097 4.097 12 H 0.053 0.947 13 C -0.106 4.106 14 C -0.126 4.126 15 C 0.065 3.935 16 N -0.592 5.592 17 C 0.548 3.452 18 O -0.550 6.550 19 C 0.101 3.899 20 N -0.431 5.431 21 C 0.053 3.947 22 C -0.084 4.084 23 C -0.103 4.103 24 C -0.047 4.047 25 C -0.154 4.154 26 C 0.125 3.875 27 N -0.494 5.494 28 C 0.081 3.919 29 C 0.121 3.879 30 H 0.259 0.741 31 H 0.360 0.640 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.049 0.951 37 H 0.108 0.892 38 H 0.076 0.924 39 H 0.158 0.842 40 H 0.212 0.788 41 H 0.200 0.800 42 H 0.196 0.804 43 H 0.185 0.815 44 H 0.174 0.826 45 H 0.052 0.948 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 40.196 -1.373 -5.319 40.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.246 4.246 3 Si 0.771 3.229 4 H -0.212 1.212 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.360 4.360 8 H 0.085 0.915 9 N -0.409 5.409 10 C 0.035 3.965 11 C -0.117 4.117 12 H 0.072 0.928 13 C -0.144 4.144 14 C -0.164 4.164 15 C -0.056 4.056 16 N -0.325 5.325 17 C 0.335 3.665 18 O -0.426 6.426 19 C -0.048 4.048 20 N -0.144 5.144 21 C -0.093 4.093 22 C -0.104 4.104 23 C -0.110 4.110 24 C -0.073 4.073 25 C -0.175 4.175 26 C -0.048 4.048 27 N -0.203 5.203 28 C -0.043 4.043 29 C -0.001 4.001 30 H 0.068 0.932 31 H 0.193 0.807 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.068 0.932 37 H 0.127 0.873 38 H 0.094 0.906 39 H 0.174 0.826 40 H 0.229 0.771 41 H 0.217 0.783 42 H 0.213 0.787 43 H 0.202 0.798 44 H 0.191 0.809 45 H 0.071 0.929 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 38.359 -1.992 -5.171 38.757 hybrid contribution 0.204 2.211 -0.071 2.221 sum 38.562 0.219 -5.242 38.918 Atomic orbital electron populations 1.69834 1.06555 1.26543 1.59987 1.25293 0.95964 1.00332 1.03003 0.85606 0.78161 0.81211 0.77897 1.21181 1.21134 1.19619 1.19100 0.82517 0.93699 1.40704 0.91489 1.42905 1.02804 1.04263 1.90894 1.20838 0.89414 0.87212 0.98992 1.21586 0.94693 0.98873 0.96517 0.92820 1.21521 0.95008 0.94467 1.03437 1.22013 0.95478 1.01790 0.97153 1.23431 0.99663 0.85070 0.97391 1.48145 1.06796 1.08420 1.69091 1.18314 0.87038 0.83308 0.77874 1.90840 1.63374 1.36873 1.51547 1.21043 0.93175 0.88866 1.01759 1.67184 1.09638 1.28022 1.09522 1.23552 0.88439 1.00908 0.96430 1.22987 1.03433 0.90145 0.93851 1.19389 0.92443 0.98049 1.01119 1.22026 1.02724 0.89207 0.93313 1.22507 0.93735 1.02451 0.98759 1.23832 0.94665 0.95249 0.91028 1.68237 1.40300 0.99007 1.12743 1.19654 0.91890 0.92857 0.99852 1.21523 0.79720 1.00742 0.98150 0.93184 0.80703 0.94726 0.94723 0.90517 0.90287 0.93228 0.87345 0.90609 0.82593 0.77112 0.78314 0.78695 0.79814 0.80885 0.92944 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -66.14 13.97 21.65 0.30 -65.84 16 2 C -0.05 -3.44 5.50 84.86 0.47 -2.98 16 3 Si 0.94 51.96 27.74 68.60 1.90 53.86 16 4 H -0.29 -15.76 7.11 99.48 0.71 -15.05 16 5 H -0.29 -15.32 7.11 99.48 0.71 -14.61 16 6 H -0.27 -14.52 6.52 99.48 0.65 -13.87 16 7 C -0.23 -14.14 10.47 84.03 0.88 -13.26 16 8 H 0.07 4.38 8.06 -2.91 -0.02 4.35 16 9 N -0.76 -40.23 5.18 -343.45 -1.78 -42.01 16 10 C 0.16 6.71 5.66 86.38 0.49 7.20 16 11 C -0.10 -3.34 2.37 -10.72 -0.03 -3.36 16 12 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 13 C -0.11 -2.59 5.17 30.62 0.16 -2.43 16 14 C -0.13 -2.56 6.10 30.82 0.19 -2.38 16 15 C 0.07 1.48 5.95 86.51 0.51 2.00 16 16 N -0.59 -19.35 2.97 -821.41 -2.44 -21.79 16 17 C 0.55 20.48 7.65 86.80 0.66 21.14 16 18 O -0.55 -25.76 14.68 -3.86 -0.06 -25.82 16 19 C 0.10 2.93 6.67 42.46 0.28 3.21 16 20 N -0.43 -8.64 6.02 -184.13 -1.11 -9.75 16 21 C 0.05 0.55 11.12 84.56 0.94 1.49 16 22 C -0.08 -0.64 9.93 22.68 0.23 -0.41 16 23 C -0.10 -1.58 5.75 -21.27 -0.12 -1.70 16 24 C -0.05 -0.39 9.94 22.48 0.22 -0.17 16 25 C -0.15 -1.58 10.03 22.17 0.22 -1.36 16 26 C 0.13 2.54 11.14 85.06 0.95 3.49 16 27 N -0.49 -15.37 8.52 -187.91 -1.60 -16.97 16 28 C 0.08 2.21 6.61 40.63 0.27 2.48 16 29 C 0.12 4.49 5.53 86.36 0.48 4.96 16 30 H 0.26 16.66 8.31 -92.71 -0.77 15.89 16 31 H 0.36 19.33 4.75 -92.71 -0.44 18.89 16 32 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.16 3.21 3.94 -72.82 -0.29 2.92 16 40 H 0.21 0.21 8.06 -2.91 -0.02 0.18 16 41 H 0.20 -0.59 8.06 -2.91 -0.02 -0.61 16 42 H 0.20 -0.35 8.06 -2.91 -0.02 -0.37 16 43 H 0.18 0.32 8.06 -2.91 -0.02 0.29 16 44 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 45 H 0.05 2.38 6.20 -2.38 -0.01 2.37 16 46 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -94.52 370.24 2.26 -92.26 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.23 Total: 18.13 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 6.80 Total: 17.92 kcal Atomic # 7 Polarization: -149.73 SS G_CDS: -6.62 Total: -156.36 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.06 Total: -25.82 kcal Atomic # 14 Polarization: 51.96 SS G_CDS: 1.90 Total: 53.86 kcal Total: -94.52 2.26 -92.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731519173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.558 kcal (2) G-P(sol) polarization free energy of solvation -94.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds