Wall clock time and date at job start Tue Mar 31 2020 23:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 119.99652 * 2 1 4 4 H 1.48497 * 109.47465 * 359.97438 * 3 2 1 5 5 H 1.48505 * 109.47052 * 119.99859 * 3 2 1 6 6 H 1.48500 * 109.47118 * 239.99790 * 3 2 1 7 7 C 1.38814 * 120.00366 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99964 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99497 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99778 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47130 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.49983 * 304.93819 * 11 10 9 13 13 C 1.53040 * 109.49635 * 184.83995 * 11 10 9 14 14 C 1.53040 * 109.54096 * 178.68790 * 13 11 10 15 15 C 1.53194 * 109.31405 * 61.36153 * 14 13 11 16 16 N 1.46924 * 108.77559 * 305.36923 * 15 14 13 17 17 C 1.34772 * 120.63467 * 233.62723 * 16 15 14 18 18 O 1.21546 * 120.00499 * 172.24739 * 17 16 15 19 19 C 1.47903 * 119.99570 * 352.24866 * 17 16 15 20 20 N 1.32132 * 120.03603 * 352.26176 * 19 17 16 21 21 C 1.31977 * 122.77201 * 179.74325 * 20 19 17 22 22 C 1.37782 * 121.72610 * 0.54087 * 21 20 19 23 23 C 1.40386 * 118.72695 * 359.73759 * 22 21 20 24 24 C 1.40640 * 122.27958 * 179.97438 * 23 22 21 25 25 C 1.36636 * 117.95395 * 180.02562 * 24 23 22 26 26 C 1.39400 * 119.92538 * 0.02562 * 25 24 23 27 27 N 1.31201 * 121.85406 * 0.02562 * 26 25 24 28 28 C 1.33261 * 121.22260 * 359.97438 * 27 26 25 29 29 C 1.46937 * 118.73914 * 53.60823 * 16 15 14 30 30 H 0.97001 * 119.99739 * 179.97438 * 1 2 3 31 31 H 0.96996 * 120.00775 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.47171 * 300.00556 * 10 9 7 33 33 H 1.09005 * 109.46812 * 60.00150 * 10 9 7 34 34 H 1.09005 * 109.45890 * 298.70666 * 13 11 10 35 35 H 1.08995 * 109.45924 * 58.66286 * 13 11 10 36 36 H 1.09005 * 109.49163 * 301.41717 * 14 13 11 37 37 H 1.08991 * 109.52515 * 181.33162 * 14 13 11 38 38 H 1.08999 * 109.58595 * 185.57966 * 15 14 13 39 39 H 1.08994 * 109.70104 * 65.22484 * 15 14 13 40 40 H 1.08001 * 119.13637 * 180.25802 * 21 20 19 41 41 H 1.07998 * 120.63560 * 179.76206 * 22 21 20 42 42 H 1.08007 * 121.02245 * 0.02562 * 24 23 22 43 43 H 1.07996 * 120.04061 * 179.97438 * 25 24 23 44 44 H 1.08005 * 119.07435 * 179.97438 * 26 25 24 45 45 H 1.08996 * 109.58574 * 186.60338 * 29 16 15 46 46 H 1.09003 * 109.58661 * 66.17819 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1038 1.6965 1.2126 6 1 3.1038 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 -0.0001 12 1 0.3800 -4.7140 0.8419 13 6 1.8246 -6.1420 0.1216 14 6 0.8293 -7.3041 0.1540 15 6 0.0310 -7.3240 -1.1534 16 7 -0.5867 -6.0056 -1.3505 17 6 -1.9126 -5.8935 -1.5646 18 8 -2.4342 -4.7958 -1.5857 19 6 -2.7329 -7.1062 -1.7738 20 7 -2.1499 -8.2848 -1.9037 21 6 -2.8290 -9.4014 -2.0873 22 6 -4.2045 -9.4081 -2.1670 23 6 -4.8935 -8.1913 -2.0431 24 6 -6.2959 -8.1116 -2.1132 25 6 -6.8749 -6.8811 -1.9817 26 6 -6.0775 -5.7547 -1.7854 27 7 -4.7695 -5.8348 -1.7217 28 6 -4.1424 -7.0045 -1.8424 29 6 0.2685 -4.8114 -1.3093 30 1 -0.4850 -0.8401 -0.0004 31 1 0.3556 -2.3881 -0.0002 32 1 2.6849 -3.7144 -0.8894 33 1 2.6848 -3.7144 0.8906 34 1 2.4905 -6.2580 -0.7336 35 1 2.4110 -6.1404 1.0404 36 1 0.1473 -7.1755 0.9946 37 1 1.3700 -8.2439 0.2644 38 1 -0.7457 -8.0865 -1.0956 39 1 0.6974 -7.5436 -1.9875 40 1 -2.2922 -10.3338 -2.1821 41 1 -4.7423 -10.3319 -2.3214 42 1 -6.8966 -8.9960 -2.2664 43 1 -7.9491 -6.7810 -2.0306 44 1 -6.5496 -4.7886 -1.6835 45 1 -0.3516 -3.9162 -1.3544 46 1 0.9562 -4.8251 -2.1549 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731519175.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:51 Heat of formation + Delta-G solvation = 70.525851 kcal Electronic energy + Delta-G solvation = -29310.309434 eV Core-core repulsion = 25394.173982 eV Total energy + Delta-G solvation = -3916.135452 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.71137 -39.82978 -38.33413 -37.42064 -34.98239 -34.08539 -32.95674 -31.84083 -31.58442 -30.86226 -29.35706 -26.39453 -25.24032 -24.89529 -24.44738 -23.20721 -22.96749 -21.40013 -20.46936 -19.52134 -18.92028 -17.89036 -17.35811 -17.09025 -16.52565 -15.85924 -15.61821 -15.17437 -14.93251 -14.69741 -14.53191 -14.28350 -14.18934 -13.85557 -13.52397 -13.48950 -13.37358 -13.08340 -12.94207 -12.88829 -12.53378 -12.36513 -12.25889 -11.54481 -11.16270 -10.95525 -10.77135 -10.61684 -10.57281 -10.38357 -10.15290 -10.11561 -9.85569 -9.79996 -9.61046 -9.08736 -8.97519 -8.82472 -8.76061 -8.30462 -6.86150 -5.95800 -2.95420 -0.42202 0.29160 1.31532 2.39214 2.97686 3.09495 3.59451 3.64134 3.73794 3.81406 3.81682 3.90017 4.03059 4.20473 4.32334 4.42891 4.71162 4.76255 4.82403 4.97458 5.02365 5.11537 5.11759 5.20144 5.20905 5.33778 5.48518 5.54861 5.66687 5.70844 5.75820 5.77026 5.90877 5.98921 6.05698 6.10235 6.15588 6.19469 6.24113 6.38412 6.48059 6.55432 6.78451 6.85518 6.93704 7.21068 7.55503 7.67365 7.93145 8.36421 8.90354 9.38169 10.24384 10.39785 11.52716 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013858 B = 0.002940 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.006284 B = 9522.038700 C =11346.862318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.046 4.046 3 Si 1.081 2.919 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.333 4.333 8 H 0.063 0.937 9 N -0.744 5.744 10 C 0.167 3.833 11 C -0.107 4.107 12 H 0.072 0.928 13 C -0.112 4.112 14 C -0.134 4.134 15 C 0.070 3.930 16 N -0.592 5.592 17 C 0.556 3.444 18 O -0.486 6.486 19 C 0.152 3.848 20 N -0.435 5.435 21 C 0.066 3.934 22 C -0.123 4.123 23 C -0.083 4.083 24 C -0.066 4.066 25 C -0.152 4.152 26 C 0.134 3.866 27 N -0.418 5.418 28 C 0.106 3.894 29 C 0.121 3.879 30 H 0.257 0.743 31 H 0.368 0.632 32 H 0.020 0.980 33 H 0.022 0.978 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.144 0.856 39 H 0.061 0.939 40 H 0.168 0.832 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.144 0.856 44 H 0.168 0.832 45 H 0.099 0.901 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.997 -26.893 -4.848 29.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.244 4.244 3 Si 0.912 3.088 4 H -0.211 1.211 5 H -0.224 1.224 6 H -0.224 1.224 7 C -0.464 4.464 8 H 0.081 0.919 9 N -0.390 5.390 10 C 0.039 3.961 11 C -0.127 4.127 12 H 0.090 0.910 13 C -0.150 4.150 14 C -0.172 4.172 15 C -0.053 4.053 16 N -0.325 5.325 17 C 0.341 3.659 18 O -0.357 6.357 19 C 0.000 4.000 20 N -0.149 5.149 21 C -0.079 4.079 22 C -0.144 4.144 23 C -0.090 4.090 24 C -0.092 4.092 25 C -0.173 4.173 26 C -0.040 4.040 27 N -0.126 5.126 28 C -0.019 4.019 29 C 0.000 4.000 30 H 0.069 0.931 31 H 0.202 0.798 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.160 0.840 39 H 0.080 0.920 40 H 0.185 0.815 41 H 0.164 0.836 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.185 0.815 45 H 0.117 0.883 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.684 -24.039 -4.722 26.727 hybrid contribution -1.354 -2.585 -0.153 2.922 sum -12.038 -26.624 -4.875 29.623 Atomic orbital electron populations 1.70840 1.05977 1.28691 1.53250 1.25767 0.97107 1.00935 1.00604 0.83241 0.74150 0.75711 0.75719 1.21074 1.22392 1.22362 1.20002 0.91910 0.85894 1.48617 0.91900 1.42430 1.04993 1.00923 1.90696 1.20569 0.92871 0.84702 0.98005 1.21689 0.97924 0.95303 0.97765 0.90994 1.21528 0.97570 0.93899 1.02042 1.21948 0.98387 0.98626 0.98246 1.22977 0.99837 0.85981 0.96454 1.48003 1.06179 1.08702 1.69655 1.17637 0.81867 0.87221 0.79214 1.90927 1.70741 1.25582 1.48445 1.21693 0.89721 0.92422 0.96134 1.67445 1.38682 0.98266 1.10476 1.22760 0.91622 0.96644 0.96887 1.22342 0.95677 0.97473 0.98922 1.18990 0.95110 0.94363 1.00575 1.21413 0.92559 0.98897 0.96380 1.22172 1.02198 0.93491 0.99488 1.23419 0.89119 0.99374 0.92085 1.68351 1.10276 1.24724 1.09204 1.19456 0.93971 0.89392 0.99033 1.21736 0.93153 0.87868 0.97274 0.93147 0.79781 0.96211 0.96064 0.91840 0.91823 0.92103 0.91136 0.84038 0.92034 0.81526 0.83640 0.83687 0.83776 0.81497 0.88313 0.91473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -31.03 13.70 55.49 0.76 -30.27 16 2 C -0.05 -1.42 5.50 -17.43 -0.10 -1.52 16 3 Si 1.08 27.29 29.92 -169.99 -5.09 22.20 16 4 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 5 H -0.30 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.30 -7.13 7.11 56.52 0.40 -6.72 16 7 C -0.33 -9.99 9.99 -15.06 -0.15 -10.15 16 8 H 0.06 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.74 -20.23 5.37 -59.91 -0.32 -20.55 16 10 C 0.17 3.62 5.65 -4.04 -0.02 3.59 16 11 C -0.11 -1.93 2.38 -90.50 -0.22 -2.15 16 12 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 13 C -0.11 -1.57 5.17 -26.69 -0.14 -1.70 16 14 C -0.13 -1.61 6.08 -26.61 -0.16 -1.78 16 15 C 0.07 0.89 5.91 -3.71 -0.02 0.87 16 16 N -0.59 -9.77 2.97 -173.86 -0.52 -10.29 16 17 C 0.56 10.07 7.65 -12.31 -0.09 9.98 16 18 O -0.49 -10.69 14.68 5.33 0.08 -10.61 16 19 C 0.15 2.24 6.67 -82.55 -0.55 1.69 16 20 N -0.44 -4.99 6.03 -9.55 -0.06 -5.05 16 21 C 0.07 0.51 11.12 -17.66 -0.20 0.32 16 22 C -0.12 -0.86 9.93 -38.94 -0.39 -1.25 16 23 C -0.08 -0.81 5.75 -106.79 -0.61 -1.42 16 24 C -0.07 -0.46 9.94 -39.25 -0.39 -0.85 16 25 C -0.15 -1.07 10.03 -39.73 -0.40 -1.46 16 26 C 0.13 1.40 11.14 -17.39 -0.19 1.20 16 27 N -0.42 -6.32 8.52 -10.75 -0.09 -6.42 16 28 C 0.11 1.48 6.61 -84.62 -0.56 0.92 16 29 C 0.12 2.26 5.53 -3.70 -0.02 2.24 16 30 H 0.26 8.50 6.77 -40.82 -0.28 8.22 16 31 H 0.37 10.45 5.72 -40.82 -0.23 10.22 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.14 1.68 3.97 -86.47 -0.34 1.33 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.17 0.68 8.06 -52.49 -0.42 0.26 16 41 H 0.15 0.46 8.06 -52.49 -0.42 0.04 16 42 H 0.15 0.47 8.06 -52.48 -0.42 0.05 16 43 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 44 H 0.17 1.34 8.06 -52.48 -0.42 0.92 16 45 H 0.10 2.21 6.20 -51.93 -0.32 1.89 16 46 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 371.64 15.07 5.60 5.60 Total: -1.00 -38.96 371.64 -10.15 -49.11 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -6.30 Total: 7.72 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -4.21 Total: -1.46 kcal Atomic # 7 Polarization: -72.34 SS G_CDS: -0.23 Total: -72.57 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.08 Total: -10.61 kcal Atomic # 14 Polarization: 27.29 SS G_CDS: -5.09 Total: 22.20 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -38.96 -10.15 -49.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731519175.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.635 kcal (2) G-P(sol) polarization free energy of solvation -38.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds