Wall clock time and date at job start Tue Mar 31 2020 23:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47551 * 179.97438 * 10 9 7 12 12 H 1.09004 * 110.01914 * 53.60421 * 11 10 9 13 13 C 1.54268 * 110.03337 * 292.16515 * 11 10 9 14 14 C 1.54887 * 104.20159 * 217.10527 * 13 11 10 15 15 C 1.54899 * 102.74441 * 37.93935 * 14 13 11 16 16 C 1.53872 * 110.03410 * 174.99868 * 11 10 9 17 17 H 1.08997 * 110.03667 * 238.56588 * 16 11 10 18 18 N 1.46499 * 110.03492 * 359.97438 * 16 11 10 19 19 C 1.34777 * 120.00011 * 204.99879 * 18 16 11 20 20 O 1.21482 * 120.00135 * 0.02562 * 19 18 16 21 21 C 1.48354 * 119.99389 * 179.97438 * 19 18 16 22 22 C 1.40169 * 119.19744 * 179.73346 * 21 19 18 23 23 C 1.36623 * 119.70366 * 179.72141 * 22 21 19 24 24 C 1.40600 * 118.21082 * 0.53553 * 23 22 21 25 25 C 1.40729 * 121.37568 * 179.73046 * 24 23 22 26 26 C 1.36586 * 118.13251 * 179.97438 * 25 24 23 27 27 C 1.39434 * 119.84387 * 0.02562 * 26 25 24 28 28 N 1.31017 * 121.84354 * 0.02562 * 27 26 25 29 29 C 1.33862 * 121.42144 * 359.97438 * 28 27 26 30 30 N 1.31885 * 119.20844 * 0.02562 * 21 19 18 31 31 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 32 32 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.46875 * 299.99762 * 10 9 7 34 34 H 1.09004 * 109.47522 * 59.99613 * 10 9 7 35 35 H 1.09004 * 110.48222 * 335.78270 * 13 11 10 36 36 H 1.08998 * 110.48779 * 98.41946 * 13 11 10 37 37 H 1.09001 * 110.75259 * 279.63118 * 14 13 11 38 38 H 1.08999 * 110.76382 * 156.25164 * 14 13 11 39 39 H 1.09002 * 110.48087 * 203.37956 * 15 14 13 40 40 H 1.08992 * 110.59873 * 80.79802 * 15 14 13 41 41 H 0.97002 * 119.99606 * 25.00377 * 18 16 11 42 42 H 1.08000 * 120.14821 * 0.02562 * 22 21 19 43 43 H 1.08005 * 120.89799 * 180.24631 * 23 22 21 44 44 H 1.07998 * 120.93667 * 359.95658 * 25 24 23 45 45 H 1.07994 * 120.07645 * 180.02562 * 26 25 24 46 46 H 1.08001 * 119.07651 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 6 5.6164 -2.1912 0.0011 12 1 5.8722 -1.5255 0.8255 13 6 6.0361 -1.5570 -1.3412 14 6 7.4271 -2.1722 -1.6336 15 6 7.2650 -3.6324 -1.1430 16 6 6.3978 -3.5107 0.1271 17 1 7.0335 -3.4852 1.0121 18 7 5.4672 -4.6391 0.2099 19 6 5.8483 -5.7843 0.8098 20 8 6.9634 -5.8806 1.2823 21 6 4.9057 -6.9267 0.8941 22 6 5.3214 -8.1117 1.5167 23 6 4.4597 -9.1683 1.6051 24 6 3.1756 -9.0270 1.0502 25 6 2.2371 -10.0745 1.0988 26 6 1.0088 -9.8652 0.5393 27 6 0.7181 -8.6390 -0.0575 28 7 1.5949 -7.6665 -0.1016 29 6 2.8169 -7.8042 0.4271 30 7 3.6988 -6.8048 0.3764 31 1 -0.4850 0.8401 0.0004 32 1 3.8646 -0.3620 0.0007 33 1 3.8486 -3.0425 0.8909 34 1 3.8493 -3.0422 -0.8891 35 1 5.3285 -1.8231 -2.1265 36 1 6.1105 -0.4739 -1.2446 37 1 8.2036 -1.6582 -1.0669 38 1 7.6447 -2.1454 -2.7013 39 1 8.2365 -4.0638 -0.9018 40 1 6.7571 -4.2356 -1.8954 41 1 4.5768 -4.5621 -0.1671 42 1 6.3167 -8.1876 1.9290 43 1 4.7585 -10.0890 2.0842 44 1 2.4813 -11.0176 1.5650 45 1 0.2646 -10.6475 0.5592 46 1 -0.2572 -8.4867 -0.4957 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732612631.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:59 Heat of formation + Delta-G solvation = 28.625299 kcal Electronic energy + Delta-G solvation = -28931.252799 eV Core-core repulsion = 25013.300403 eV Total energy + Delta-G solvation = -3917.952396 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.37610 -41.25040 -39.56675 -38.43274 -36.41655 -35.35023 -34.65980 -33.60568 -32.18774 -32.03106 -30.61081 -28.89489 -26.70258 -26.28033 -25.25553 -24.02107 -23.67750 -22.52071 -21.61444 -20.65257 -20.06983 -19.48546 -19.32122 -18.17945 -17.46685 -17.14115 -16.64262 -16.58715 -16.29920 -15.97327 -15.74755 -15.57157 -15.50256 -15.16672 -15.12298 -14.77355 -14.57355 -14.37189 -14.00300 -13.66493 -13.55300 -13.29952 -12.93767 -12.88888 -12.83110 -12.38573 -12.16914 -12.08796 -11.98782 -11.92710 -11.85303 -11.77012 -11.59044 -11.50126 -11.23910 -11.00807 -10.23191 -10.10908 -10.03441 -9.92752 -9.34371 -8.04527 -5.39557 -1.00931 -0.57107 0.81298 1.25034 1.35553 1.40481 1.47840 1.91692 2.09299 2.46772 2.53601 3.03556 3.24250 3.28528 3.35797 3.47955 3.61254 3.62433 3.72438 3.76983 3.91378 3.96195 4.04845 4.24325 4.31899 4.42628 4.43179 4.45129 4.47075 4.56273 4.65164 4.72850 4.79235 4.85353 4.93115 4.93717 5.04467 5.09995 5.17095 5.19580 5.21148 5.28229 5.42911 5.46408 5.59918 5.72549 6.10818 6.18522 6.37169 6.90398 7.04876 7.09496 7.78401 8.01129 9.17290 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009375 B = 0.003502 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2985.899385 B = 7994.251095 C =10473.204921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.063 4.063 3 Si 0.959 3.041 4 H -0.278 1.278 5 H -0.246 1.246 6 H -0.293 1.293 7 C -0.239 4.239 8 H 0.047 0.953 9 N -0.750 5.750 10 C 0.165 3.835 11 C -0.104 4.104 12 H 0.090 0.910 13 C -0.117 4.117 14 C -0.109 4.109 15 C -0.126 4.126 16 C 0.147 3.853 17 H 0.095 0.905 18 N -0.702 5.702 19 C 0.566 3.434 20 O -0.550 6.550 21 C 0.121 3.879 22 C -0.142 4.142 23 C -0.023 4.023 24 C -0.153 4.153 25 C -0.038 4.038 26 C -0.161 4.161 27 C 0.154 3.846 28 N -0.520 5.520 29 C 0.266 3.734 30 N -0.476 5.476 31 H 0.259 0.741 32 H 0.369 0.631 33 H 0.014 0.986 34 H 0.019 0.981 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.413 0.587 42 H 0.170 0.830 43 H 0.203 0.797 44 H 0.194 0.806 45 H 0.191 0.809 46 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.105 -24.308 1.415 27.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.254 4.254 3 Si 0.786 3.214 4 H -0.204 1.204 5 H -0.170 1.170 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.065 0.935 9 N -0.396 5.396 10 C 0.038 3.962 11 C -0.123 4.123 12 H 0.108 0.892 13 C -0.154 4.154 14 C -0.147 4.147 15 C -0.165 4.165 16 C 0.043 3.957 17 H 0.113 0.887 18 N -0.354 5.354 19 C 0.351 3.649 20 O -0.428 6.428 21 C -0.034 4.034 22 C -0.163 4.163 23 C -0.049 4.049 24 C -0.158 4.158 25 C -0.064 4.064 26 C -0.181 4.181 27 C -0.022 4.022 28 N -0.230 5.230 29 C 0.028 3.972 30 N -0.190 5.190 31 H 0.068 0.932 32 H 0.202 0.798 33 H 0.032 0.968 34 H 0.037 0.963 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.252 0.748 42 H 0.188 0.812 43 H 0.220 0.780 44 H 0.211 0.789 45 H 0.208 0.792 46 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 13.275 -22.806 0.925 26.405 hybrid contribution -0.529 0.069 0.476 0.715 sum 12.747 -22.737 1.401 26.103 Atomic orbital electron populations 1.69911 1.07286 1.26805 1.59425 1.25560 0.96184 1.01446 1.02202 0.85349 0.78859 0.79025 0.78210 1.20373 1.17021 1.21950 1.18992 0.82759 0.93364 1.41908 0.93473 1.42571 1.02340 1.03821 1.90850 1.20704 0.90631 0.87643 0.97198 1.22222 0.93334 0.96437 1.00350 0.89175 1.22402 0.97529 1.00288 0.95221 1.22435 0.96192 0.93916 1.02140 1.22736 0.99721 0.98297 0.95711 1.21812 0.90149 0.83449 1.00336 0.88667 1.46424 1.18977 1.13068 1.56908 1.18151 0.86025 0.82649 0.78098 1.90719 1.20678 1.82574 1.48872 1.21469 0.90355 0.95382 0.96239 1.22007 1.03248 0.91828 0.99209 1.22005 0.89587 1.00006 0.93280 1.20068 0.98305 0.96179 1.01288 1.22062 0.91474 0.98332 0.94506 1.22544 0.98975 0.98870 0.97667 1.23836 0.98191 0.88264 0.91894 1.67626 1.01814 1.34472 1.19114 1.19530 0.91711 0.89422 0.96497 1.67223 1.02287 1.32156 1.17301 0.93240 0.79752 0.96800 0.96283 0.92471 0.90947 0.89506 0.89870 0.90067 0.91855 0.74787 0.81239 0.78043 0.78870 0.79193 0.79332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.56 13.97 21.65 0.30 -65.26 16 2 C -0.06 -3.85 5.50 84.86 0.47 -3.38 16 3 Si 0.96 46.75 27.74 68.60 1.90 48.65 16 4 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.25 -10.65 6.52 99.48 0.65 -10.00 16 6 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 7 C -0.24 -14.59 10.47 84.03 0.88 -13.71 16 8 H 0.05 3.22 8.06 -2.91 -0.02 3.19 16 9 N -0.75 -37.23 5.25 -343.47 -1.80 -39.04 16 10 C 0.16 6.89 4.19 86.38 0.36 7.25 16 11 C -0.10 -3.28 2.96 -10.07 -0.03 -3.31 16 12 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 13 C -0.12 -3.25 6.08 31.67 0.19 -3.06 16 14 C -0.11 -2.30 6.91 31.89 0.22 -2.08 16 15 C -0.13 -3.02 6.53 31.67 0.21 -2.81 16 16 C 0.15 4.21 3.22 45.72 0.15 4.36 16 17 H 0.10 2.70 7.56 -2.39 -0.02 2.69 16 18 N -0.70 -22.71 4.37 -441.50 -1.93 -24.64 16 19 C 0.57 18.13 7.81 86.94 0.68 18.81 16 20 O -0.55 -18.33 15.93 -3.66 -0.06 -18.39 16 21 C 0.12 3.63 6.75 42.30 0.29 3.91 16 22 C -0.14 -2.99 9.54 22.36 0.21 -2.78 16 23 C -0.02 -0.33 9.89 22.47 0.22 -0.11 16 24 C -0.15 -3.00 5.75 -21.20 -0.12 -3.13 16 25 C -0.04 -0.40 9.90 22.49 0.22 -0.17 16 26 C -0.16 -1.69 10.04 22.17 0.22 -1.46 16 27 C 0.15 2.97 11.14 85.10 0.95 3.92 16 28 N -0.52 -16.28 10.43 -193.75 -2.02 -18.30 16 29 C 0.27 8.17 7.62 135.12 1.03 9.20 16 30 N -0.48 -16.48 9.56 -182.98 -1.75 -18.23 16 31 H 0.26 16.29 8.31 -92.71 -0.77 15.52 16 32 H 0.37 17.05 5.41 -92.71 -0.50 16.55 16 33 H 0.01 0.64 7.42 -2.38 -0.02 0.62 16 34 H 0.02 0.85 7.10 -2.39 -0.02 0.83 16 35 H 0.06 1.80 7.76 -2.39 -0.02 1.78 16 36 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.06 1.62 8.05 -2.39 -0.02 1.60 16 41 H 0.41 14.85 5.20 -92.71 -0.48 14.37 16 42 H 0.17 2.95 7.60 -2.91 -0.02 2.93 16 43 H 0.20 0.71 8.06 -2.91 -0.02 0.69 16 44 H 0.19 0.09 8.06 -2.91 -0.02 0.07 16 45 H 0.19 0.24 8.06 -2.91 -0.02 0.22 16 46 H 0.19 2.50 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -87.64 377.71 0.77 -86.87 By element: Atomic # 1 Polarization: 36.89 SS G_CDS: -0.02 Total: 36.87 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: 6.15 Total: 11.45 kcal Atomic # 7 Polarization: -158.26 SS G_CDS: -7.20 Total: -165.46 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.06 Total: -18.39 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.90 Total: 48.65 kcal Total: -87.64 0.77 -86.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732612631.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.496 kcal (2) G-P(sol) polarization free energy of solvation -87.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds