Wall clock time and date at job start Tue Mar 31 2020 23:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48493 * 109.47326 * 89.99918 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99668 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99379 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99632 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47337 * 179.97438 * 10 9 7 12 12 H 1.08993 * 110.01976 * 305.70437 * 11 10 9 13 13 C 1.54266 * 110.02827 * 67.09429 * 11 10 9 14 14 C 1.54892 * 104.19619 * 142.89551 * 13 11 10 15 15 C 1.54889 * 102.74596 * 322.05540 * 14 13 11 16 16 C 1.53874 * 110.03614 * 184.30955 * 11 10 9 17 17 H 1.08993 * 110.03396 * 121.43039 * 16 11 10 18 18 N 1.46508 * 110.02808 * 0.02562 * 16 11 10 19 19 C 1.34782 * 119.99558 * 154.99981 * 18 16 11 20 20 O 1.21493 * 120.00084 * 0.02562 * 19 18 16 21 21 C 1.48353 * 119.99675 * 179.97438 * 19 18 16 22 22 C 1.40170 * 119.19899 * 179.97438 * 21 19 18 23 23 C 1.36629 * 119.70211 * 179.97438 * 22 21 19 24 24 C 1.40595 * 118.21065 * 0.02562 * 23 22 21 25 25 C 1.40732 * 121.37759 * 179.97438 * 24 23 22 26 26 C 1.36594 * 118.13264 * 180.02562 * 25 24 23 27 27 C 1.39433 * 119.84209 * 0.02562 * 26 25 24 28 28 N 1.31007 * 121.84184 * 359.97438 * 27 26 25 29 29 C 1.33859 * 121.42724 * 359.97438 * 28 27 26 30 30 N 1.31878 * 119.20555 * 359.73465 * 21 19 18 31 31 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 32 32 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 33 33 H 1.08993 * 109.47502 * 300.00081 * 10 9 7 34 34 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 35 35 H 1.09006 * 110.48515 * 261.57355 * 13 11 10 36 36 H 1.08999 * 110.48648 * 24.08117 * 13 11 10 37 37 H 1.09000 * 110.75722 * 80.37271 * 14 13 11 38 38 H 1.09002 * 110.75432 * 203.74204 * 14 13 11 39 39 H 1.09004 * 110.48525 * 156.62040 * 15 14 13 40 40 H 1.09002 * 110.48654 * 279.12890 * 15 14 13 41 41 H 0.96995 * 120.00124 * 335.00301 * 18 16 11 42 42 H 1.07991 * 120.14999 * 0.02562 * 22 21 19 43 43 H 1.08002 * 120.89303 * 180.02562 * 23 22 21 44 44 H 1.07998 * 120.93907 * 0.05036 * 25 24 23 45 45 H 1.07993 * 120.07600 * 179.97438 * 26 25 24 46 46 H 1.08005 * 119.07247 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6526 -0.7002 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4710 0.0011 11 6 5.6163 -2.1915 0.0011 12 1 5.8740 -1.5357 -0.8305 13 6 6.0327 -1.5403 1.3361 14 6 7.4230 -2.1518 1.6397 15 6 7.2620 -3.6181 1.1673 16 6 6.3979 -3.5125 -0.1076 17 1 7.0355 -3.4975 -0.9914 18 7 5.4673 -4.6417 -0.1790 19 6 5.8496 -5.7940 -0.7645 20 8 6.9661 -5.8963 -1.2325 21 6 4.9075 -6.9377 -0.8364 22 6 5.3224 -8.1279 -1.4495 23 6 4.4633 -9.1879 -1.5209 24 6 3.1785 -9.0404 -0.9692 25 6 2.2404 -10.0887 -1.0063 26 6 1.0113 -9.8731 -0.4508 27 6 0.7192 -8.6397 0.1302 28 7 1.5953 -7.6662 0.1627 29 6 2.8183 -7.8100 -0.3621 30 7 3.7016 -6.8116 -0.3177 31 1 -0.4850 0.8401 -0.0004 32 1 3.8646 -0.3622 0.0007 33 1 3.8484 -3.0428 0.8907 34 1 3.8490 -3.0424 -0.8892 35 1 6.1076 -0.4585 1.2259 36 1 5.3220 -1.7945 2.1225 37 1 8.2009 -1.6452 1.0685 38 1 7.6380 -2.1114 2.7075 39 1 8.2340 -4.0527 0.9338 40 1 6.7532 -4.2103 1.9280 41 1 4.5760 -4.5601 0.1949 42 1 6.3170 -8.2071 -1.8628 43 1 4.7630 -10.1141 -1.9886 44 1 2.4853 -11.0372 -1.4609 45 1 0.2673 -10.6558 -0.4622 46 1 -0.2564 -8.4828 0.5662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732612634.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:11 Heat of formation + Delta-G solvation = 54.342577 kcal Electronic energy + Delta-G solvation = -28929.018908 eV Core-core repulsion = 25012.181696 eV Total energy + Delta-G solvation = -3916.837211 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.53714 -40.12718 -38.46848 -37.44639 -34.54919 -34.45082 -33.58168 -31.50480 -31.41357 -31.20830 -28.98131 -27.81957 -25.72766 -24.68464 -24.40710 -22.91636 -22.11488 -21.46785 -20.53677 -19.23623 -19.05720 -18.37336 -17.59504 -17.37319 -16.48369 -15.94862 -15.57523 -15.32333 -15.12094 -14.73280 -14.60817 -14.46607 -14.28800 -14.00120 -13.83414 -13.52954 -13.41275 -13.16280 -12.62535 -12.45614 -12.23732 -12.20131 -11.77480 -11.59559 -11.41706 -10.97672 -10.94120 -10.90638 -10.87834 -10.50500 -10.46550 -10.31581 -10.15759 -9.98550 -9.52213 -9.29381 -9.28467 -9.20869 -8.97062 -8.81284 -7.17746 -5.70414 -3.05855 -0.23315 0.19819 1.56261 2.11628 2.96815 3.05026 3.41097 3.42221 3.43656 3.48782 3.88490 4.05587 4.27962 4.29614 4.43250 4.50629 4.63011 4.64827 4.74153 4.75256 4.95871 5.01988 5.03589 5.32071 5.34188 5.44261 5.53721 5.54674 5.56874 5.61439 5.68519 5.76694 5.78424 5.84385 5.85859 5.93500 6.01176 6.12216 6.21591 6.25370 6.36096 6.50487 6.57273 6.67891 6.76456 7.01248 7.53777 7.85336 8.06870 8.14743 8.48456 9.27602 9.99497 10.19344 11.48085 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009390 B = 0.003499 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.064882 B = 7999.718150 C =10478.949638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.277 1.277 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.091 0.909 9 N -0.751 5.751 10 C 0.160 3.840 11 C -0.113 4.113 12 H 0.083 0.917 13 C -0.116 4.116 14 C -0.123 4.123 15 C -0.132 4.132 16 C 0.147 3.853 17 H 0.093 0.907 18 N -0.695 5.695 19 C 0.568 3.432 20 O -0.535 6.535 21 C 0.145 3.855 22 C -0.130 4.130 23 C -0.049 4.049 24 C -0.143 4.143 25 C -0.049 4.049 26 C -0.171 4.171 27 C 0.160 3.840 28 N -0.451 5.451 29 C 0.303 3.697 30 N -0.428 5.428 31 H 0.258 0.742 32 H 0.361 0.639 33 H 0.029 0.971 34 H 0.030 0.970 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.421 0.579 42 H 0.156 0.844 43 H 0.149 0.851 44 H 0.144 0.856 45 H 0.145 0.855 46 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.961 -22.377 -0.609 24.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.204 1.204 6 H -0.218 1.218 7 C -0.371 4.371 8 H 0.109 0.891 9 N -0.397 5.397 10 C 0.033 3.967 11 C -0.132 4.132 12 H 0.101 0.899 13 C -0.154 4.154 14 C -0.161 4.161 15 C -0.171 4.171 16 C 0.042 3.958 17 H 0.111 0.889 18 N -0.349 5.349 19 C 0.351 3.649 20 O -0.412 6.412 21 C -0.012 4.012 22 C -0.151 4.151 23 C -0.075 4.075 24 C -0.148 4.148 25 C -0.076 4.076 26 C -0.191 4.191 27 C -0.018 4.018 28 N -0.159 5.159 29 C 0.065 3.935 30 N -0.140 5.140 31 H 0.068 0.932 32 H 0.194 0.806 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.262 0.738 42 H 0.174 0.826 43 H 0.167 0.833 44 H 0.162 0.838 45 H 0.163 0.837 46 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 11.077 -20.846 -0.140 23.607 hybrid contribution 0.345 -0.325 -0.667 0.819 sum 11.422 -21.171 -0.807 24.070 Atomic orbital electron populations 1.69713 1.05075 1.25661 1.57814 1.24657 0.95210 0.97083 1.02195 0.86561 0.79228 0.85114 0.77736 1.21090 1.20370 1.21812 1.19096 0.80588 0.94826 1.42603 0.89094 1.42654 1.04004 1.01982 1.91056 1.20673 0.87813 0.89681 0.98547 1.22286 0.96786 0.95068 0.99044 0.89891 1.22416 0.96138 0.99871 0.96964 1.22472 0.97678 0.95101 1.00837 1.22791 0.99833 0.97440 0.97008 1.21756 0.90390 0.84529 0.99135 0.88870 1.46345 1.19179 1.12014 1.57336 1.17876 0.85906 0.82405 0.78707 1.90761 1.20002 1.82369 1.48020 1.21486 0.90700 0.94520 0.94538 1.21825 1.02098 0.92214 0.98946 1.21444 0.91309 0.99240 0.95542 1.19746 0.96585 0.96660 1.01855 1.21478 0.92561 0.97881 0.95704 1.22104 0.97953 0.99393 0.99661 1.23234 0.98287 0.87694 0.92562 1.67713 1.00474 1.31811 1.15914 1.19221 0.91643 0.87831 0.94830 1.67408 1.01117 1.30319 1.15178 0.93158 0.80639 0.95300 0.95212 0.91513 0.90592 0.91482 0.91464 0.91258 0.91083 0.73771 0.82629 0.83303 0.83841 0.83711 0.81208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.99 13.97 55.49 0.78 -29.21 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 3 Si 0.88 22.51 27.74 -169.99 -4.71 17.80 16 4 H -0.28 -7.16 7.11 56.52 0.40 -6.75 16 5 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 6 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 7 C -0.24 -7.03 10.47 -15.06 -0.16 -7.18 16 8 H 0.09 2.87 8.06 -52.49 -0.42 2.44 16 9 N -0.75 -18.24 5.24 -59.91 -0.31 -18.55 16 10 C 0.16 3.19 4.18 -4.04 -0.02 3.17 16 11 C -0.11 -1.77 2.97 -89.50 -0.27 -2.03 16 12 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 13 C -0.12 -1.67 6.05 -25.07 -0.15 -1.82 16 14 C -0.12 -1.43 6.91 -24.74 -0.17 -1.60 16 15 C -0.13 -1.64 6.53 -25.02 -0.16 -1.80 16 16 C 0.15 2.08 3.23 -66.75 -0.22 1.87 16 17 H 0.09 1.34 7.56 -51.93 -0.39 0.94 16 18 N -0.70 -10.52 4.39 -53.44 -0.23 -10.76 16 19 C 0.57 8.58 7.81 -12.09 -0.09 8.49 16 20 O -0.54 -8.71 15.93 5.37 0.09 -8.63 16 21 C 0.15 2.04 6.75 -82.96 -0.56 1.48 16 22 C -0.13 -1.39 9.54 -39.44 -0.38 -1.77 16 23 C -0.05 -0.42 9.89 -39.27 -0.39 -0.81 16 24 C -0.14 -1.51 5.75 -106.68 -0.61 -2.12 16 25 C -0.05 -0.35 9.90 -39.23 -0.39 -0.74 16 26 C -0.17 -1.16 10.04 -39.73 -0.40 -1.56 16 27 C 0.16 1.54 11.14 -17.46 -0.19 1.35 16 28 N -0.45 -6.55 10.43 -12.59 -0.13 -6.68 16 29 C 0.30 4.38 7.62 -157.91 -1.20 3.18 16 30 N -0.43 -6.74 9.56 -9.19 -0.09 -6.83 16 31 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 32 H 0.36 8.50 5.39 -40.82 -0.22 8.28 16 33 H 0.03 0.59 7.08 -51.93 -0.37 0.22 16 34 H 0.03 0.63 7.46 -51.93 -0.39 0.24 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.19 7.77 -51.93 -0.40 0.78 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.90 8.06 -51.93 -0.42 0.49 16 41 H 0.42 6.83 5.19 -40.82 -0.21 6.62 16 42 H 0.16 1.43 7.60 -52.49 -0.40 1.03 16 43 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 45 H 0.15 0.47 8.06 -52.49 -0.42 0.04 16 46 H 0.17 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 377.70 15.07 5.69 5.69 Total: -1.00 -36.58 377.70 -10.58 -47.16 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -6.20 Total: 11.90 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -5.45 Total: -1.89 kcal Atomic # 7 Polarization: -72.04 SS G_CDS: 0.01 Total: -72.03 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.09 Total: -8.63 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.71 Total: 17.80 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.58 -10.58 -47.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732612634.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.503 kcal (2) G-P(sol) polarization free energy of solvation -36.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds