Wall clock time and date at job start Tue Mar 31 2020 23:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48493 * 109.47326 * 89.99918 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99668 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99379 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99632 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47337 * 179.97438 * 10 9 7 12 12 H 1.08993 * 110.01976 * 305.70437 * 11 10 9 13 13 C 1.54266 * 110.02827 * 67.09429 * 11 10 9 14 14 C 1.54892 * 104.19619 * 142.89551 * 13 11 10 15 15 C 1.54889 * 102.74596 * 322.05540 * 14 13 11 16 16 C 1.53874 * 110.03614 * 184.30955 * 11 10 9 17 17 H 1.08993 * 110.03396 * 121.43039 * 16 11 10 18 18 N 1.46508 * 110.02808 * 0.02562 * 16 11 10 19 19 C 1.34782 * 119.99558 * 154.99981 * 18 16 11 20 20 O 1.21493 * 120.00084 * 0.02562 * 19 18 16 21 21 C 1.48353 * 119.99675 * 179.97438 * 19 18 16 22 22 C 1.40170 * 119.19899 * 179.97438 * 21 19 18 23 23 C 1.36629 * 119.70211 * 179.97438 * 22 21 19 24 24 C 1.40595 * 118.21065 * 0.02562 * 23 22 21 25 25 C 1.40732 * 121.37759 * 179.97438 * 24 23 22 26 26 C 1.36594 * 118.13264 * 180.02562 * 25 24 23 27 27 C 1.39433 * 119.84209 * 0.02562 * 26 25 24 28 28 N 1.31007 * 121.84184 * 359.97438 * 27 26 25 29 29 C 1.33859 * 121.42724 * 359.97438 * 28 27 26 30 30 N 1.31878 * 119.20555 * 359.73465 * 21 19 18 31 31 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 32 32 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 33 33 H 1.08993 * 109.47502 * 300.00081 * 10 9 7 34 34 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 35 35 H 1.09006 * 110.48515 * 261.57355 * 13 11 10 36 36 H 1.08999 * 110.48648 * 24.08117 * 13 11 10 37 37 H 1.09000 * 110.75722 * 80.37271 * 14 13 11 38 38 H 1.09002 * 110.75432 * 203.74204 * 14 13 11 39 39 H 1.09004 * 110.48525 * 156.62040 * 15 14 13 40 40 H 1.09002 * 110.48654 * 279.12890 * 15 14 13 41 41 H 0.96995 * 120.00124 * 335.00301 * 18 16 11 42 42 H 1.07991 * 120.14999 * 0.02562 * 22 21 19 43 43 H 1.08002 * 120.89303 * 180.02562 * 23 22 21 44 44 H 1.07998 * 120.93907 * 0.05036 * 25 24 23 45 45 H 1.07993 * 120.07600 * 179.97438 * 26 25 24 46 46 H 1.08005 * 119.07247 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6526 -0.7002 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4710 0.0011 11 6 5.6163 -2.1915 0.0011 12 1 5.8740 -1.5357 -0.8305 13 6 6.0327 -1.5403 1.3361 14 6 7.4230 -2.1518 1.6397 15 6 7.2620 -3.6181 1.1673 16 6 6.3979 -3.5125 -0.1076 17 1 7.0355 -3.4975 -0.9914 18 7 5.4673 -4.6417 -0.1790 19 6 5.8496 -5.7940 -0.7645 20 8 6.9661 -5.8963 -1.2325 21 6 4.9075 -6.9377 -0.8364 22 6 5.3224 -8.1279 -1.4495 23 6 4.4633 -9.1879 -1.5209 24 6 3.1785 -9.0404 -0.9692 25 6 2.2404 -10.0887 -1.0063 26 6 1.0113 -9.8731 -0.4508 27 6 0.7192 -8.6397 0.1302 28 7 1.5953 -7.6662 0.1627 29 6 2.8183 -7.8100 -0.3621 30 7 3.7016 -6.8116 -0.3177 31 1 -0.4850 0.8401 -0.0004 32 1 3.8646 -0.3622 0.0007 33 1 3.8484 -3.0428 0.8907 34 1 3.8490 -3.0424 -0.8892 35 1 6.1076 -0.4585 1.2259 36 1 5.3220 -1.7945 2.1225 37 1 8.2009 -1.6452 1.0685 38 1 7.6380 -2.1114 2.7075 39 1 8.2340 -4.0527 0.9338 40 1 6.7532 -4.2103 1.9280 41 1 4.5760 -4.5601 0.1949 42 1 6.3170 -8.2071 -1.8628 43 1 4.7630 -10.1141 -1.9886 44 1 2.4853 -11.0372 -1.4609 45 1 0.2673 -10.6558 -0.4622 46 1 -0.2564 -8.4828 0.5662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732612634.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:10 Heat of formation + Delta-G solvation = 28.585470 kcal Electronic energy + Delta-G solvation = -28930.135820 eV Core-core repulsion = 25012.181696 eV Total energy + Delta-G solvation = -3917.954123 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.37644 -41.24664 -39.56463 -38.43284 -36.41459 -35.35023 -34.65914 -33.60515 -32.18785 -32.03157 -30.60913 -28.89109 -26.70205 -26.28082 -25.25617 -24.02382 -23.67791 -22.52124 -21.61048 -20.65186 -20.07041 -19.48550 -19.32155 -18.17976 -17.46688 -17.14046 -16.64310 -16.58416 -16.30248 -15.97253 -15.74998 -15.57273 -15.49813 -15.16274 -15.11890 -14.77404 -14.59220 -14.37123 -14.00322 -13.65595 -13.54571 -13.29887 -12.93586 -12.88734 -12.82252 -12.40417 -12.16960 -12.11033 -11.98892 -11.92621 -11.85632 -11.74564 -11.59470 -11.49286 -11.23953 -11.00835 -10.23210 -10.10909 -10.03458 -9.92764 -9.34461 -8.04602 -5.39576 -1.00950 -0.57135 0.81254 1.24979 1.35434 1.40462 1.47549 1.91638 2.09232 2.46654 2.53569 3.03542 3.25605 3.27012 3.35777 3.47921 3.61228 3.62449 3.72649 3.76970 3.91371 3.96111 4.04814 4.24307 4.31885 4.42711 4.43179 4.45129 4.47150 4.56123 4.65128 4.73014 4.79239 4.85362 4.93091 4.93667 5.04638 5.09980 5.17261 5.19751 5.21123 5.28377 5.42833 5.46822 5.59902 5.72527 6.10785 6.18487 6.37159 6.90354 7.04791 7.09488 7.78355 8.01068 9.17236 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009390 B = 0.003499 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.064882 B = 7999.718150 C =10478.949638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.062 4.062 3 Si 0.960 3.040 4 H -0.273 1.273 5 H -0.250 1.250 6 H -0.294 1.294 7 C -0.239 4.239 8 H 0.047 0.953 9 N -0.750 5.750 10 C 0.165 3.835 11 C -0.104 4.104 12 H 0.089 0.911 13 C -0.117 4.117 14 C -0.109 4.109 15 C -0.126 4.126 16 C 0.147 3.853 17 H 0.095 0.905 18 N -0.702 5.702 19 C 0.566 3.434 20 O -0.551 6.551 21 C 0.121 3.879 22 C -0.142 4.142 23 C -0.023 4.023 24 C -0.153 4.153 25 C -0.038 4.038 26 C -0.161 4.161 27 C 0.154 3.846 28 N -0.520 5.520 29 C 0.266 3.734 30 N -0.476 5.476 31 H 0.259 0.741 32 H 0.369 0.631 33 H 0.020 0.980 34 H 0.013 0.987 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.413 0.587 42 H 0.170 0.830 43 H 0.203 0.797 44 H 0.194 0.806 45 H 0.191 0.809 46 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.074 -24.310 -1.236 27.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.254 4.254 3 Si 0.786 3.214 4 H -0.199 1.199 5 H -0.174 1.174 6 H -0.220 1.220 7 C -0.370 4.370 8 H 0.065 0.935 9 N -0.396 5.396 10 C 0.038 3.962 11 C -0.123 4.123 12 H 0.107 0.893 13 C -0.155 4.155 14 C -0.147 4.147 15 C -0.165 4.165 16 C 0.043 3.957 17 H 0.113 0.887 18 N -0.354 5.354 19 C 0.351 3.649 20 O -0.429 6.429 21 C -0.034 4.034 22 C -0.163 4.163 23 C -0.049 4.049 24 C -0.158 4.158 25 C -0.064 4.064 26 C -0.181 4.181 27 C -0.022 4.022 28 N -0.230 5.230 29 C 0.028 3.972 30 N -0.190 5.190 31 H 0.068 0.932 32 H 0.202 0.798 33 H 0.038 0.962 34 H 0.031 0.969 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.252 0.748 42 H 0.188 0.812 43 H 0.220 0.780 44 H 0.211 0.789 45 H 0.208 0.792 46 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 13.244 -22.803 -0.766 26.381 hybrid contribution -0.519 0.062 -0.469 0.702 sum 12.725 -22.741 -1.234 26.089 Atomic orbital electron populations 1.69913 1.07276 1.26802 1.59419 1.25560 0.96183 1.01435 1.02204 0.85344 0.78649 0.79032 0.78383 1.19920 1.17437 1.22047 1.18995 0.82755 0.93370 1.41917 0.93458 1.42572 1.02344 1.03819 1.90850 1.20700 0.90635 0.87639 0.97188 1.22219 0.93338 0.96373 1.00416 0.89306 1.22410 0.97550 1.00283 0.95265 1.22433 0.96202 0.93859 1.02191 1.22750 0.99730 0.98299 0.95682 1.21830 0.90159 0.83418 1.00331 0.88690 1.46425 1.18902 1.12609 1.57440 1.18157 0.86042 0.82686 0.78047 1.90722 1.20569 1.82792 1.48774 1.21465 0.90388 0.95358 0.96228 1.22007 1.03255 0.91748 0.99285 1.22004 0.89609 1.00094 0.93167 1.20066 0.98291 0.96094 1.01385 1.22064 0.91487 0.98428 0.94396 1.22546 0.98965 0.98816 0.97729 1.23834 0.98215 0.88292 0.91838 1.67619 1.01829 1.34767 1.18812 1.19529 0.91680 0.89369 0.96578 1.67222 1.02261 1.32398 1.17082 0.93235 0.79753 0.96180 0.96914 0.90843 0.92371 0.89528 0.89845 0.90092 0.91834 0.74782 0.81245 0.78043 0.78871 0.79193 0.79329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.52 13.97 21.65 0.30 -65.22 16 2 C -0.06 -3.84 5.50 84.86 0.47 -3.38 16 3 Si 0.96 46.78 27.74 68.60 1.90 48.68 16 4 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.25 -10.94 6.52 99.48 0.65 -10.29 16 6 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 7 C -0.24 -14.60 10.47 84.03 0.88 -13.72 16 8 H 0.05 3.23 8.06 -2.91 -0.02 3.20 16 9 N -0.75 -37.25 5.24 -343.45 -1.80 -39.05 16 10 C 0.16 6.90 4.18 86.38 0.36 7.26 16 11 C -0.10 -3.28 2.97 -10.07 -0.03 -3.31 16 12 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 13 C -0.12 -3.25 6.05 31.67 0.19 -3.06 16 14 C -0.11 -2.29 6.91 31.89 0.22 -2.07 16 15 C -0.13 -3.02 6.53 31.70 0.21 -2.81 16 16 C 0.15 4.22 3.23 45.75 0.15 4.37 16 17 H 0.10 2.71 7.56 -2.39 -0.02 2.69 16 18 N -0.70 -22.73 4.39 -441.30 -1.94 -24.67 16 19 C 0.57 18.14 7.81 86.94 0.68 18.82 16 20 O -0.55 -18.35 15.93 -3.69 -0.06 -18.41 16 21 C 0.12 3.63 6.75 42.30 0.29 3.92 16 22 C -0.14 -2.99 9.54 22.36 0.21 -2.78 16 23 C -0.02 -0.33 9.89 22.47 0.22 -0.11 16 24 C -0.15 -3.00 5.75 -21.20 -0.12 -3.13 16 25 C -0.04 -0.39 9.90 22.49 0.22 -0.17 16 26 C -0.16 -1.69 10.04 22.17 0.22 -1.46 16 27 C 0.15 2.97 11.14 85.10 0.95 3.92 16 28 N -0.52 -16.28 10.43 -193.76 -2.02 -18.30 16 29 C 0.27 8.17 7.62 135.12 1.03 9.20 16 30 N -0.48 -16.48 9.56 -182.98 -1.75 -18.23 16 31 H 0.26 16.28 8.31 -92.70 -0.77 15.51 16 32 H 0.37 17.07 5.39 -92.71 -0.50 16.57 16 33 H 0.02 0.89 7.08 -2.39 -0.02 0.87 16 34 H 0.01 0.58 7.46 -2.38 -0.02 0.57 16 35 H 0.07 1.94 8.14 -2.38 -0.02 1.93 16 36 H 0.06 1.82 7.77 -2.39 -0.02 1.80 16 37 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.06 1.62 8.06 -2.39 -0.02 1.60 16 41 H 0.41 14.86 5.19 -92.71 -0.48 14.38 16 42 H 0.17 2.95 7.60 -2.92 -0.02 2.93 16 43 H 0.20 0.71 8.06 -2.91 -0.02 0.69 16 44 H 0.19 0.09 8.06 -2.91 -0.02 0.07 16 45 H 0.19 0.24 8.06 -2.91 -0.02 0.21 16 46 H 0.19 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -87.61 377.70 0.77 -86.84 By element: Atomic # 1 Polarization: 36.88 SS G_CDS: -0.02 Total: 36.86 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 6.15 Total: 11.49 kcal Atomic # 7 Polarization: -158.26 SS G_CDS: -7.21 Total: -165.46 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.06 Total: -18.41 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 1.90 Total: 48.68 kcal Total: -87.61 0.77 -86.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732612634.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.427 kcal (2) G-P(sol) polarization free energy of solvation -87.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds