Wall clock time and date at job start Tue Mar 31 2020 23:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00109 * 2 1 4 4 C 1.47206 * 109.47263 * 180.02562 * 3 2 1 5 5 C 3.40065 * 161.19100 * 0.02562 * 2 1 3 6 6 C 4.78779 * 168.18712 * 0.02562 * 2 1 3 7 7 N 1.46901 * 109.47015 * 322.86907 * 6 5 4 8 8 C 1.46906 * 110.99793 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.46978 * 180.02562 * 8 7 6 10 10 H 1.09003 * 110.43531 * 305.69740 * 9 8 7 11 11 C 1.54885 * 110.49191 * 68.24173 * 9 8 7 12 12 C 1.55021 * 102.68730 * 156.51404 * 11 9 8 13 13 C 1.54259 * 104.28357 * 322.23839 * 12 11 9 14 14 H 1.09003 * 110.07511 * 264.20664 * 13 12 11 15 15 N 1.46498 * 110.03697 * 142.80060 * 13 12 11 16 16 C 1.34773 * 120.00329 * 87.82942 * 15 13 12 17 17 O 1.21287 * 119.99935 * 0.02562 * 16 15 13 18 18 C 1.50699 * 120.00302 * 180.02562 * 16 15 13 19 19 S 1.80999 * 109.47259 * 180.02562 * 18 16 15 20 20 C 1.76199 * 99.99977 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00168 * 0.02562 * 20 19 18 22 22 C 1.38806 * 119.99828 * 179.97438 * 20 19 18 23 23 N 1.31625 * 119.99828 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99749 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47180 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47141 * 120.00300 * 24 22 20 27 27 H 1.48504 * 109.47015 * 240.00180 * 24 22 20 28 28 C 1.53870 * 106.59969 * 23.51387 * 13 12 11 29 29 H 1.09003 * 109.46870 * 300.00233 * 1 2 3 30 30 H 1.09000 * 109.46979 * 59.99708 * 1 2 3 31 31 H 1.08993 * 109.47309 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47689 * 59.99922 * 3 2 1 33 33 H 1.09001 * 109.47098 * 299.99487 * 3 2 1 34 34 H 1.09002 * 109.47132 * 82.87190 * 6 5 4 35 35 H 1.09001 * 109.47213 * 202.87220 * 6 5 4 36 36 H 1.00899 * 111.00283 * 303.95364 * 7 6 5 37 37 H 1.08995 * 109.47087 * 299.99901 * 8 7 6 38 38 H 1.09002 * 109.46903 * 59.99922 * 8 7 6 39 39 H 1.08999 * 110.75452 * 274.93957 * 11 9 8 40 40 H 1.09006 * 110.75351 * 38.30600 * 11 9 8 41 41 H 1.08998 * 110.53033 * 203.48950 * 12 11 9 42 42 H 1.09005 * 110.48103 * 80.95838 * 12 11 9 43 43 H 0.97003 * 120.00246 * 267.83379 * 15 13 12 44 44 H 1.09004 * 109.47138 * 300.00238 * 18 16 15 45 45 H 1.09002 * 109.47112 * 60.00408 * 18 16 15 46 46 H 0.97005 * 119.99456 * 179.97438 * 23 22 20 47 47 H 1.09001 * 110.03517 * 240.71885 * 28 13 12 48 48 H 1.09000 * 110.03844 * 119.28644 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.4777 1.1892 -0.0006 5 6 4.6481 1.0964 0.0005 6 6 6.1154 0.9801 0.0004 7 7 6.5163 -0.1593 0.8365 8 6 7.9778 -0.3068 0.8596 9 6 8.3559 -1.5012 1.7377 10 1 7.9131 -1.4005 2.7286 11 6 7.9046 -2.8262 1.0745 12 6 8.8535 -3.8695 1.7182 13 6 10.2059 -3.1361 1.8300 14 1 10.8349 -3.3784 0.9734 15 7 10.8823 -3.5171 3.0724 16 6 11.6836 -4.6004 3.0987 17 8 11.8452 -5.2597 2.0935 18 6 12.3789 -4.9926 4.3769 19 16 13.3749 -6.4766 4.0911 20 6 14.0554 -6.7030 5.7005 21 1 13.8047 -6.0152 6.4944 22 6 14.9128 -7.7661 5.9482 23 7 15.2179 -8.6048 4.9806 24 14 15.6337 -8.0065 7.6546 25 1 15.1385 -6.9357 8.5565 26 1 15.2208 -9.3310 8.1844 27 1 17.1155 -7.9436 7.5794 28 6 9.8897 -1.6303 1.8424 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 6.4675 0.8243 -1.0193 35 1 6.5524 1.8953 0.3999 36 1 6.1468 -0.0698 1.7711 37 1 8.3423 -0.4718 -0.1543 38 1 8.4280 0.5995 1.2646 39 1 6.8648 -3.0450 1.3171 40 1 8.0506 -2.7871 -0.0050 41 1 8.9471 -4.7470 1.0784 42 1 8.4919 -4.1557 2.7059 43 1 10.7533 -2.9896 3.8763 44 1 13.0261 -4.1784 4.7031 45 1 11.6352 -5.1965 5.1472 46 1 15.8174 -9.3475 5.1537 47 1 10.3644 -1.1420 0.9914 48 1 10.2393 -1.1829 2.7728 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734467239.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:45 Heat of formation + Delta-G solvation = -69.672079 kcal Electronic energy + Delta-G solvation = -25017.618184 eV Core-core repulsion = 21198.554493 eV Total energy + Delta-G solvation = -3819.063690 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.94400 -39.25320 -38.94109 -37.23983 -34.98273 -34.58183 -33.91742 -31.42140 -30.50492 -29.38994 -28.36846 -27.63410 -26.88801 -25.66400 -23.92029 -22.12114 -21.38712 -20.95677 -19.81281 -18.45078 -17.92821 -17.46197 -17.35961 -16.93504 -16.88075 -16.82730 -16.47337 -16.25627 -15.91222 -15.74526 -15.32215 -15.02465 -14.67133 -14.48827 -14.31146 -14.19142 -13.77436 -13.69544 -13.47928 -13.15701 -13.01383 -12.92466 -12.82346 -12.59933 -12.53318 -12.32184 -11.94271 -11.74092 -11.72355 -11.67734 -11.43940 -11.28792 -11.15689 -11.15290 -10.88427 -10.47772 -10.26406 -10.03352 -9.36618 -8.66340 -8.34583 -6.12557 1.27913 1.32262 1.41558 1.47980 1.59031 1.61171 1.64217 2.26856 2.34463 2.94634 2.99771 3.17523 3.33115 3.57210 3.61591 3.82757 3.86310 4.03542 4.23251 4.30877 4.34407 4.36406 4.44367 4.47307 4.50458 4.51803 4.52741 4.55932 4.60221 4.63656 4.67850 4.71444 4.78268 4.85239 4.87907 4.95942 5.04865 5.19788 5.24033 5.36587 5.42288 5.53458 5.65167 5.98917 6.13879 6.20281 6.38687 6.54772 6.56210 7.06880 7.30023 8.75028 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025122 B = 0.001330 C = 0.001306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.306551 B =21048.647689 C =21435.078656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.173 3.827 4 C -0.208 4.208 5 C -0.162 4.162 6 C 0.171 3.829 7 N -0.696 5.696 8 C 0.072 3.928 9 C -0.079 4.079 10 H 0.084 0.916 11 C -0.096 4.096 12 C -0.138 4.138 13 C 0.139 3.861 14 H 0.065 0.935 15 N -0.707 5.707 16 C 0.532 3.468 17 O -0.567 6.567 18 C -0.130 4.130 19 S -0.153 6.153 20 C -0.546 4.546 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.912 5.912 24 Si 0.999 3.001 25 H -0.256 1.256 26 H -0.274 1.274 27 H -0.274 1.274 28 C -0.113 4.113 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.347 0.653 37 H 0.078 0.922 38 H 0.050 0.950 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.045 0.955 42 H 0.066 0.934 43 H 0.415 0.585 44 H 0.110 0.890 45 H 0.108 0.892 46 H 0.271 0.729 47 H 0.087 0.913 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.275 27.431 -7.084 38.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C 0.098 3.902 4 C -0.209 4.209 5 C -0.162 4.162 6 C 0.044 3.956 7 N -0.328 5.328 8 C -0.057 4.057 9 C -0.098 4.098 10 H 0.103 0.897 11 C -0.134 4.134 12 C -0.177 4.177 13 C 0.034 3.966 14 H 0.084 0.916 15 N -0.361 5.361 16 C 0.318 3.682 17 O -0.445 6.445 18 C -0.281 4.281 19 S 0.074 5.926 20 C -0.694 4.694 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.549 5.549 24 Si 0.821 3.179 25 H -0.180 1.180 26 H -0.200 1.200 27 H -0.199 1.199 28 C -0.152 4.152 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.121 0.879 35 H 0.092 0.908 36 H 0.165 0.835 37 H 0.096 0.904 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.063 0.937 42 H 0.085 0.915 43 H 0.253 0.747 44 H 0.128 0.872 45 H 0.126 0.874 46 H 0.080 0.920 47 H 0.105 0.895 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -25.890 25.600 -9.316 37.583 hybrid contribution 0.402 1.040 2.648 2.873 sum -25.488 26.640 -6.669 37.467 Atomic orbital electron populations 1.22988 0.78346 1.04093 1.01617 1.87938 1.22272 1.28032 1.95792 1.19301 0.82517 0.85252 1.03126 1.22459 0.94030 1.03149 1.01263 1.22799 0.94457 0.97432 1.01555 1.18947 0.83134 0.93395 1.00160 1.60363 1.11825 1.42867 1.17737 1.22015 0.86151 0.96916 1.00583 1.21894 0.94215 0.94226 0.99486 0.89730 1.22340 0.98290 0.93208 0.99567 1.22814 0.95206 0.98527 1.01128 1.21682 0.92818 0.95781 0.86329 0.91649 1.45981 1.47280 1.28406 1.14388 1.20096 0.78554 0.80585 0.88961 1.90687 1.63748 1.53438 1.36656 1.23385 1.02762 1.02973 0.98980 1.85595 1.57618 1.31379 1.18030 1.23244 1.33414 1.16454 0.96258 0.89913 1.26128 0.95885 0.94272 1.02814 1.70195 1.34757 1.15326 1.34575 0.84904 0.77839 0.78577 0.76608 1.17975 1.19956 1.19892 1.22384 0.96085 0.92395 1.04288 0.92306 0.92283 0.88858 0.89001 0.88992 0.87904 0.90753 0.83459 0.90361 0.93146 0.91257 0.91517 0.93657 0.91526 0.74729 0.87171 0.87367 0.92000 0.89463 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.42 -6.86 10.66 -148.98 -1.59 -8.44 16 3 C 0.17 2.06 6.41 70.18 0.45 2.51 16 4 C -0.21 -3.58 13.73 31.13 0.43 -3.15 16 5 C -0.16 -2.66 13.60 31.12 0.42 -2.24 16 6 C 0.17 1.89 6.16 84.50 0.52 2.41 16 7 N -0.70 -8.38 6.32 -523.73 -3.31 -11.69 16 8 C 0.07 0.69 4.97 86.30 0.43 1.12 16 9 C -0.08 -0.95 3.03 -9.72 -0.03 -0.98 16 10 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 11 C -0.10 -1.64 6.20 31.93 0.20 -1.44 16 12 C -0.14 -3.15 6.53 31.71 0.21 -2.94 16 13 C 0.14 3.13 3.25 45.71 0.15 3.28 16 14 H 0.07 1.85 7.56 -2.39 -0.02 1.84 16 15 N -0.71 -17.84 5.03 -439.12 -2.21 -20.05 16 16 C 0.53 19.94 7.84 87.66 0.69 20.62 16 17 O -0.57 -26.88 15.52 -3.05 -0.05 -26.93 16 18 C -0.13 -5.19 6.16 71.24 0.44 -4.75 16 19 S -0.15 -8.63 20.57 -56.49 -1.16 -9.80 16 20 C -0.55 -31.44 9.50 67.96 0.65 -30.79 16 21 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 22 C 0.01 0.78 5.49 84.86 0.47 1.25 16 23 N -0.91 -56.52 13.22 21.65 0.29 -56.24 16 24 Si 1.00 43.84 29.55 68.60 2.03 45.86 16 25 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 28 C -0.11 -1.51 6.14 31.32 0.19 -1.32 16 29 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.35 3.94 8.71 -89.69 -0.78 3.16 16 37 H 0.08 0.79 8.06 -2.39 -0.02 0.77 16 38 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.07 1.18 8.00 -2.38 -0.02 1.16 16 41 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.07 1.55 8.05 -2.38 -0.02 1.53 16 43 H 0.42 7.42 8.32 -92.71 -0.77 6.64 16 44 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 45 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 46 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 47 H 0.09 1.04 7.84 -2.39 -0.02 1.02 16 48 H 0.09 0.94 7.62 -2.39 -0.02 0.92 16 Total: -1.00 -82.15 418.35 -0.14 -82.29 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -0.59 Total: 19.98 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: 6.45 Total: -14.98 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -5.23 Total: -87.99 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -1.64 Total: -35.37 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.80 kcal Total: -82.15 -0.14 -82.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734467239.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.616 kcal (2) G-P(sol) polarization free energy of solvation -82.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds