Wall clock time and date at job start Tue Mar 31 2020 23:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99747 * 2 1 4 4 C 1.47201 * 109.47007 * 180.02562 * 3 2 1 5 5 C 3.40061 * 161.18783 * 0.02562 * 2 1 3 6 6 C 4.78782 * 168.18413 * 0.02562 * 2 1 3 7 7 N 1.46904 * 109.47130 * 291.38045 * 6 5 4 8 8 C 1.46899 * 111.00029 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47254 * 179.97438 * 8 7 6 10 10 H 1.09001 * 110.43481 * 54.29291 * 9 8 7 11 11 C 1.54266 * 110.48706 * 291.75958 * 9 8 7 12 12 C 1.53878 * 106.60037 * 217.71141 * 11 9 8 13 13 C 1.54266 * 106.59541 * 359.97438 * 12 11 9 14 14 H 1.08995 * 110.49184 * 264.93173 * 13 12 11 15 15 N 1.46505 * 110.48526 * 142.42288 * 13 12 11 16 16 C 1.34775 * 120.00156 * 86.45630 * 15 13 12 17 17 O 1.21280 * 119.99877 * 359.97438 * 16 15 13 18 18 C 1.50696 * 120.00154 * 180.02562 * 16 15 13 19 19 S 1.81001 * 109.47194 * 179.97438 * 18 16 15 20 20 C 1.76207 * 99.99933 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99731 * 359.97438 * 20 19 18 22 22 C 1.38795 * 119.99680 * 180.02562 * 20 19 18 23 23 N 1.31632 * 120.00448 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99840 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46963 * 60.00240 * 24 22 20 26 26 H 1.48494 * 109.47370 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47422 * 300.00474 * 24 22 20 28 28 C 1.54893 * 110.48932 * 176.83889 * 9 8 7 29 29 H 1.09007 * 109.47024 * 299.99885 * 1 2 3 30 30 H 1.09002 * 109.47180 * 60.00140 * 1 2 3 31 31 H 1.08996 * 109.47143 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46870 * 60.00234 * 3 2 1 33 33 H 1.08996 * 109.47298 * 299.99576 * 3 2 1 34 34 H 1.08995 * 109.47135 * 171.37977 * 6 5 4 35 35 H 1.09003 * 109.47439 * 51.37412 * 6 5 4 36 36 H 1.00908 * 110.99583 * 303.95104 * 7 6 5 37 37 H 1.09002 * 109.47043 * 299.99792 * 8 7 6 38 38 H 1.09001 * 109.47354 * 59.99854 * 8 7 6 39 39 H 1.09004 * 110.03272 * 336.99427 * 11 9 8 40 40 H 1.09000 * 110.03618 * 98.37686 * 11 9 8 41 41 H 1.09002 * 110.03659 * 119.28137 * 12 11 9 42 42 H 1.09002 * 110.03128 * 240.66443 * 12 11 9 43 43 H 0.97001 * 119.99863 * 266.45211 * 15 13 12 44 44 H 1.09005 * 109.47068 * 300.00313 * 18 16 15 45 45 H 1.09007 * 109.47153 * 59.99918 * 18 16 15 46 46 H 0.96997 * 120.00083 * 179.97438 * 23 22 20 47 47 H 1.08996 * 110.75517 * 274.93733 * 28 9 8 48 48 H 1.08994 * 110.75148 * 38.30635 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.4776 1.1893 -0.0006 5 6 4.6479 1.0966 0.0005 6 6 6.1154 0.9804 0.0004 7 7 6.5637 0.4384 1.2901 8 6 8.0265 0.3088 1.3268 9 6 8.4546 -0.2568 2.6824 10 1 7.9298 -1.1897 2.8884 11 6 8.1910 0.7697 3.8033 12 6 9.3652 0.6534 4.7910 13 6 10.3010 -0.4403 4.2361 14 1 10.0762 -1.4033 4.6943 15 7 11.7026 -0.0800 4.4644 16 6 12.2990 -0.3985 5.6302 17 8 11.6753 -0.9830 6.4906 18 6 13.7405 -0.0274 5.8652 19 16 14.2470 -0.5866 7.5106 20 6 15.9218 -0.0390 7.5177 21 1 16.3261 0.4731 6.6571 22 6 16.7216 -0.2667 8.6290 23 7 16.2292 -0.8922 9.6773 24 14 18.4973 0.3132 8.6363 25 1 18.5373 1.7873 8.4615 26 1 19.1309 -0.0488 9.9296 27 1 19.2351 -0.3374 7.5238 28 6 9.9873 -0.4777 2.7181 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 6.5577 1.9645 -0.1536 35 1 6.4270 0.3122 -0.8024 36 1 6.2319 1.0058 2.0558 37 1 8.3517 -0.3638 0.5330 38 1 8.4818 1.2885 1.1822 39 1 8.1521 1.7761 3.3864 40 1 7.2531 0.5386 4.3083 41 1 9.8962 1.6033 4.8534 42 1 8.9974 0.3661 5.7761 43 1 12.2013 0.3878 3.7764 44 1 14.3661 -0.5041 5.1105 45 1 13.8525 1.0549 5.7993 46 1 16.7883 -1.0516 10.4537 47 1 10.2480 -1.4463 2.2915 48 1 10.5057 0.3272 2.1972 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734467240.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:49 Heat of formation + Delta-G solvation = -45.228617 kcal Electronic energy + Delta-G solvation = -24937.284942 eV Core-core repulsion = 21119.281200 eV Total energy + Delta-G solvation = -3818.003742 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.76016 -38.49785 -38.30762 -36.52069 -34.07274 -33.09793 -32.41785 -30.45176 -29.41797 -28.81890 -27.56038 -26.37949 -25.47651 -25.04885 -23.49260 -20.92378 -20.71803 -19.56361 -18.00799 -17.81335 -17.06061 -16.80245 -16.48970 -16.34561 -16.05799 -15.79175 -15.31363 -14.99882 -14.79507 -14.69953 -14.11974 -13.89128 -13.65547 -13.49455 -13.37237 -13.13777 -12.90240 -12.77457 -12.66305 -12.32575 -12.12259 -11.97688 -11.47891 -11.30029 -11.05142 -11.03260 -11.01770 -10.93100 -10.80048 -10.74963 -10.57715 -10.51879 -10.04410 -9.80985 -9.35496 -9.05267 -8.94161 -8.82658 -8.22434 -6.48606 -6.20462 -3.91039 1.93988 2.14075 3.05577 3.12303 3.24074 3.28257 3.31980 3.38030 3.66302 3.80904 4.08085 4.21629 4.30408 4.35810 4.59936 4.66717 4.72939 4.79829 4.86877 4.87608 4.94703 5.02157 5.09278 5.14302 5.14562 5.17880 5.23613 5.24608 5.26527 5.35032 5.41813 5.49556 5.63229 5.67607 5.71088 5.88864 5.91073 6.05728 6.15069 6.19415 6.20451 6.46420 6.51830 6.73716 6.85370 7.13040 7.60130 7.76131 8.35985 8.66019 9.24660 10.86943 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.040824 B = 0.001263 C = 0.001243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.708596 B =22160.121071 C =22523.854665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.178 3.822 4 C -0.182 4.182 5 C -0.146 4.146 6 C 0.170 3.830 7 N -0.686 5.686 8 C 0.067 3.933 9 C -0.089 4.089 10 H 0.089 0.911 11 C -0.119 4.119 12 C -0.136 4.136 13 C 0.144 3.856 14 H 0.093 0.907 15 N -0.733 5.733 16 C 0.532 3.468 17 O -0.517 6.517 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 C -0.123 4.123 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.099 0.901 36 H 0.347 0.653 37 H 0.077 0.923 38 H 0.035 0.965 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.397 0.603 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.269 0.731 47 H 0.075 0.925 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.087 6.654 -23.502 35.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.103 3.897 4 C -0.184 4.184 5 C -0.147 4.147 6 C 0.042 3.958 7 N -0.318 5.318 8 C -0.061 4.061 9 C -0.108 4.108 10 H 0.108 0.892 11 C -0.157 4.157 12 C -0.175 4.175 13 C 0.039 3.961 14 H 0.111 0.889 15 N -0.387 5.387 16 C 0.318 3.682 17 O -0.391 6.391 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 C -0.161 4.161 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.117 0.883 36 H 0.165 0.835 37 H 0.095 0.905 38 H 0.053 0.947 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.231 0.769 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.079 0.921 47 H 0.094 0.906 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -27.070 4.775 -22.045 35.236 hybrid contribution 2.128 2.506 -1.223 3.507 sum -24.942 7.281 -23.268 34.879 Atomic orbital electron populations 1.22808 0.80105 1.03379 1.00275 1.87995 1.20204 1.26808 1.95505 1.19056 0.83679 0.85538 1.01431 1.21662 0.92821 1.03728 1.00146 1.22158 0.93474 0.97211 1.01843 1.18860 0.84087 0.99128 0.93724 1.60450 1.11552 1.56115 1.03688 1.22039 0.86376 0.99605 0.98116 1.21948 0.95326 0.99872 0.93666 0.89249 1.22196 0.98789 0.98576 0.96160 1.22554 0.96058 0.99466 0.99416 1.21740 0.80863 0.98857 0.94659 0.88937 1.46058 1.12308 1.61841 1.18463 1.20313 0.88589 0.78057 0.81257 1.90698 1.65612 1.39676 1.43087 1.23540 0.94606 1.04742 1.07572 1.85397 1.12416 1.76148 1.09369 1.22835 0.96783 1.44010 1.04866 0.91007 1.24980 0.99144 0.94793 0.94576 1.70008 1.36731 1.38716 1.04864 0.86235 0.82626 0.79129 0.77575 1.19955 1.20797 1.19931 1.22778 0.95340 1.02467 0.95561 0.93624 0.93720 0.89125 0.90707 0.90852 0.92549 0.88297 0.83479 0.90472 0.94677 0.92156 0.91425 0.91400 0.91043 0.76927 0.89276 0.89318 0.92128 0.90604 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.24 16 2 O -0.39 -3.20 10.66 -35.23 -0.38 -3.58 16 3 C 0.18 1.15 6.41 34.37 0.22 1.37 16 4 C -0.18 -1.64 13.73 -37.12 -0.51 -2.15 16 5 C -0.15 -1.29 13.60 -37.12 -0.50 -1.79 16 6 C 0.17 1.12 6.16 -6.61 -0.04 1.08 16 7 N -0.69 -4.97 6.47 -116.89 -0.76 -5.73 16 8 C 0.07 0.43 5.06 -3.83 -0.02 0.41 16 9 C -0.09 -0.66 3.10 -88.96 -0.28 -0.94 16 10 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 11 C -0.12 -0.97 5.62 -25.61 -0.14 -1.11 16 12 C -0.14 -1.49 6.53 -25.61 -0.17 -1.66 16 13 C 0.14 1.67 3.15 -66.18 -0.21 1.46 16 14 H 0.09 1.28 7.66 -51.93 -0.40 0.88 16 15 N -0.73 -9.66 5.12 -52.12 -0.27 -9.93 16 16 C 0.53 9.91 7.84 -10.99 -0.09 9.82 16 17 O -0.52 -11.75 15.57 5.56 0.09 -11.66 16 18 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 19 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 20 C -0.54 -15.35 9.50 30.94 0.29 -15.06 16 21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 22 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.29 13.22 55.49 0.73 -25.55 16 24 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 28 C -0.12 -0.98 5.94 -24.65 -0.15 -1.13 16 29 H 0.05 0.14 8.14 -51.92 -0.42 -0.28 16 30 H 0.04 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.35 2.45 7.99 -39.29 -0.31 2.13 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.04 0.20 8.01 -51.93 -0.42 -0.21 16 39 H 0.06 0.44 7.74 -51.93 -0.40 0.04 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.77 8.04 -51.93 -0.42 0.35 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.40 4.04 8.54 -40.82 -0.35 3.70 16 44 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 45 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 46 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 47 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.07 0.50 7.95 -51.93 -0.41 0.09 16 LS Contribution 417.84 15.07 6.30 6.30 Total: -1.00 -36.11 417.84 -10.04 -46.15 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -8.17 Total: 0.76 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -0.35 Total: -9.32 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: -0.29 Total: -41.21 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.29 Total: -15.24 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -36.11 -10.04 -46.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734467240.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.924 kcal (2) G-P(sol) polarization free energy of solvation -36.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds