Wall clock time and date at job start Tue Mar 31 2020 23:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99747 * 2 1 4 4 C 1.47201 * 109.47007 * 180.02562 * 3 2 1 5 5 C 3.40061 * 161.18783 * 0.02562 * 2 1 3 6 6 C 4.78782 * 168.18413 * 0.02562 * 2 1 3 7 7 N 1.46904 * 109.47130 * 291.38045 * 6 5 4 8 8 C 1.46899 * 111.00029 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47254 * 179.97438 * 8 7 6 10 10 H 1.09001 * 110.43481 * 54.29291 * 9 8 7 11 11 C 1.54266 * 110.48706 * 291.75958 * 9 8 7 12 12 C 1.53878 * 106.60037 * 217.71141 * 11 9 8 13 13 C 1.54266 * 106.59541 * 359.97438 * 12 11 9 14 14 H 1.08995 * 110.49184 * 264.93173 * 13 12 11 15 15 N 1.46505 * 110.48526 * 142.42288 * 13 12 11 16 16 C 1.34775 * 120.00156 * 86.45630 * 15 13 12 17 17 O 1.21280 * 119.99877 * 359.97438 * 16 15 13 18 18 C 1.50696 * 120.00154 * 180.02562 * 16 15 13 19 19 S 1.81001 * 109.47194 * 179.97438 * 18 16 15 20 20 C 1.76207 * 99.99933 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99731 * 359.97438 * 20 19 18 22 22 C 1.38795 * 119.99680 * 180.02562 * 20 19 18 23 23 N 1.31632 * 120.00448 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99840 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46963 * 60.00240 * 24 22 20 26 26 H 1.48494 * 109.47370 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47422 * 300.00474 * 24 22 20 28 28 C 1.54893 * 110.48932 * 176.83889 * 9 8 7 29 29 H 1.09007 * 109.47024 * 299.99885 * 1 2 3 30 30 H 1.09002 * 109.47180 * 60.00140 * 1 2 3 31 31 H 1.08996 * 109.47143 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46870 * 60.00234 * 3 2 1 33 33 H 1.08996 * 109.47298 * 299.99576 * 3 2 1 34 34 H 1.08995 * 109.47135 * 171.37977 * 6 5 4 35 35 H 1.09003 * 109.47439 * 51.37412 * 6 5 4 36 36 H 1.00908 * 110.99583 * 303.95104 * 7 6 5 37 37 H 1.09002 * 109.47043 * 299.99792 * 8 7 6 38 38 H 1.09001 * 109.47354 * 59.99854 * 8 7 6 39 39 H 1.09004 * 110.03272 * 336.99427 * 11 9 8 40 40 H 1.09000 * 110.03618 * 98.37686 * 11 9 8 41 41 H 1.09002 * 110.03659 * 119.28137 * 12 11 9 42 42 H 1.09002 * 110.03128 * 240.66443 * 12 11 9 43 43 H 0.97001 * 119.99863 * 266.45211 * 15 13 12 44 44 H 1.09005 * 109.47068 * 300.00313 * 18 16 15 45 45 H 1.09007 * 109.47153 * 59.99918 * 18 16 15 46 46 H 0.96997 * 120.00083 * 179.97438 * 23 22 20 47 47 H 1.08996 * 110.75517 * 274.93733 * 28 9 8 48 48 H 1.08994 * 110.75148 * 38.30635 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.4776 1.1893 -0.0006 5 6 4.6479 1.0966 0.0005 6 6 6.1154 0.9804 0.0004 7 7 6.5637 0.4384 1.2901 8 6 8.0265 0.3088 1.3268 9 6 8.4546 -0.2568 2.6824 10 1 7.9298 -1.1897 2.8884 11 6 8.1910 0.7697 3.8033 12 6 9.3652 0.6534 4.7910 13 6 10.3010 -0.4403 4.2361 14 1 10.0762 -1.4033 4.6943 15 7 11.7026 -0.0800 4.4644 16 6 12.2990 -0.3985 5.6302 17 8 11.6753 -0.9830 6.4906 18 6 13.7405 -0.0274 5.8652 19 16 14.2470 -0.5866 7.5106 20 6 15.9218 -0.0390 7.5177 21 1 16.3261 0.4731 6.6571 22 6 16.7216 -0.2667 8.6290 23 7 16.2292 -0.8922 9.6773 24 14 18.4973 0.3132 8.6363 25 1 18.5373 1.7873 8.4615 26 1 19.1309 -0.0488 9.9296 27 1 19.2351 -0.3374 7.5238 28 6 9.9873 -0.4777 2.7181 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 6.5577 1.9645 -0.1536 35 1 6.4270 0.3122 -0.8024 36 1 6.2319 1.0058 2.0558 37 1 8.3517 -0.3638 0.5330 38 1 8.4818 1.2885 1.1822 39 1 8.1521 1.7761 3.3864 40 1 7.2531 0.5386 4.3083 41 1 9.8962 1.6033 4.8534 42 1 8.9974 0.3661 5.7761 43 1 12.2013 0.3878 3.7764 44 1 14.3661 -0.5041 5.1105 45 1 13.8525 1.0549 5.7993 46 1 16.7883 -1.0516 10.4537 47 1 10.2480 -1.4463 2.2915 48 1 10.5057 0.3272 2.1972 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734467240.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:48 Heat of formation + Delta-G solvation = -71.294014 kcal Electronic energy + Delta-G solvation = -24938.415222 eV Core-core repulsion = 21119.281200 eV Total energy + Delta-G solvation = -3819.134023 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.93126 -39.32338 -38.94444 -37.22428 -35.02757 -34.57965 -33.92623 -31.42564 -30.51661 -29.44443 -28.37745 -27.63375 -26.87027 -25.64588 -24.05495 -22.16142 -21.63902 -20.44179 -19.80145 -18.55228 -17.86395 -17.56779 -17.39125 -17.04887 -16.89984 -16.87389 -16.61509 -16.19096 -15.94886 -15.79611 -15.48579 -14.87132 -14.53579 -14.44977 -14.32240 -13.91322 -13.85235 -13.69259 -13.39269 -13.38241 -13.16815 -13.05783 -12.86331 -12.63011 -12.51190 -12.45849 -11.99345 -11.77200 -11.69257 -11.60093 -11.35662 -11.32222 -11.12431 -11.10290 -10.91391 -10.51475 -10.27224 -10.05600 -9.41129 -8.66473 -8.34044 -6.12501 1.27590 1.36963 1.44340 1.47569 1.54219 1.57632 1.63249 2.27075 2.32006 2.91914 3.00085 3.23731 3.33200 3.55807 3.57062 3.66535 3.95779 4.04357 4.22805 4.28484 4.29838 4.36620 4.40993 4.44279 4.48753 4.50167 4.51101 4.54439 4.56572 4.59813 4.63784 4.71314 4.77025 4.86000 4.87693 4.94364 5.08150 5.14857 5.19186 5.30277 5.41768 5.49832 5.62038 5.98500 6.13116 6.19953 6.35453 6.53959 6.55732 7.07055 7.29164 8.75050 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.040824 B = 0.001263 C = 0.001243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.708596 B =22160.121071 C =22523.854665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.173 3.827 4 C -0.207 4.207 5 C -0.163 4.163 6 C 0.170 3.830 7 N -0.700 5.700 8 C 0.074 3.926 9 C -0.082 4.082 10 H 0.077 0.923 11 C -0.110 4.110 12 C -0.135 4.135 13 C 0.137 3.863 14 H 0.065 0.935 15 N -0.706 5.706 16 C 0.532 3.468 17 O -0.567 6.567 18 C -0.129 4.129 19 S -0.154 6.154 20 C -0.548 4.548 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.912 5.912 24 Si 0.998 3.002 25 H -0.262 1.262 26 H -0.279 1.279 27 H -0.261 1.261 28 C -0.109 4.109 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.346 0.654 37 H 0.084 0.916 38 H 0.050 0.950 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.043 0.957 43 H 0.416 0.584 44 H 0.110 0.890 45 H 0.109 0.891 46 H 0.271 0.729 47 H 0.082 0.918 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.617 8.422 -26.431 37.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.340 6.340 3 C 0.098 3.902 4 C -0.209 4.209 5 C -0.164 4.164 6 C 0.043 3.957 7 N -0.332 5.332 8 C -0.055 4.055 9 C -0.101 4.101 10 H 0.095 0.905 11 C -0.148 4.148 12 C -0.174 4.174 13 C 0.032 3.968 14 H 0.083 0.917 15 N -0.359 5.359 16 C 0.318 3.682 17 O -0.445 6.445 18 C -0.281 4.281 19 S 0.074 5.926 20 C -0.696 4.696 21 H 0.101 0.899 22 C -0.190 4.190 23 N -0.549 5.549 24 Si 0.820 3.180 25 H -0.186 1.186 26 H -0.204 1.204 27 H -0.186 1.186 28 C -0.147 4.147 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.093 0.907 35 H 0.125 0.875 36 H 0.164 0.836 37 H 0.103 0.897 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.062 0.938 43 H 0.254 0.746 44 H 0.128 0.872 45 H 0.128 0.872 46 H 0.080 0.920 47 H 0.101 0.899 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -26.620 6.569 -25.043 37.134 hybrid contribution 1.845 1.957 -0.383 2.716 sum -24.776 8.525 -25.426 36.510 Atomic orbital electron populations 1.22991 0.78342 1.04129 1.01598 1.87932 1.22283 1.28027 1.95795 1.19304 0.82503 0.85265 1.03137 1.22466 0.94054 1.04082 1.00250 1.22819 0.94471 0.97093 1.01991 1.18974 0.82914 1.00273 0.93541 1.60426 1.12170 1.56573 1.04013 1.21983 0.85919 1.00422 0.97128 1.21859 0.94792 0.99189 0.94296 0.90466 1.22129 0.97227 0.99832 0.95607 1.22505 0.97042 0.98887 0.98936 1.21907 0.79630 0.97771 0.97504 0.91713 1.45805 1.12997 1.60208 1.16894 1.20102 0.87953 0.77865 0.82245 1.90689 1.66404 1.42259 1.45143 1.23381 0.95929 1.05819 1.02933 1.85601 1.13607 1.77483 1.15952 1.23187 0.96822 1.44047 1.05522 0.89863 1.26124 1.04394 0.94598 0.93914 1.70181 1.38758 1.40193 1.05741 0.85011 0.76005 0.79079 0.77948 1.18617 1.20414 1.18588 1.22723 0.95783 1.03837 0.92371 0.92471 0.92195 0.88755 0.89141 0.88813 0.90706 0.87544 0.83554 0.89717 0.93183 0.90405 0.91649 0.91448 0.93826 0.74613 0.87167 0.87244 0.91993 0.89920 0.88507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 11.01 113.37 1.25 1.44 16 2 O -0.42 -6.78 10.66 -148.98 -1.59 -8.37 16 3 C 0.17 2.09 6.41 70.18 0.45 2.54 16 4 C -0.21 -3.62 13.73 31.13 0.43 -3.19 16 5 C -0.16 -2.73 13.60 31.13 0.42 -2.30 16 6 C 0.17 1.90 6.16 84.50 0.52 2.42 16 7 N -0.70 -8.72 6.47 -523.72 -3.39 -12.12 16 8 C 0.07 0.71 5.06 86.30 0.44 1.14 16 9 C -0.08 -1.05 3.10 -9.72 -0.03 -1.08 16 10 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 11 C -0.11 -1.61 5.62 31.32 0.18 -1.43 16 12 C -0.13 -2.89 6.53 31.32 0.20 -2.69 16 13 C 0.14 3.05 3.15 46.12 0.15 3.19 16 14 H 0.06 1.84 7.66 -2.39 -0.02 1.83 16 15 N -0.71 -17.48 5.12 -437.19 -2.24 -19.72 16 16 C 0.53 19.75 7.84 87.66 0.69 20.44 16 17 O -0.57 -26.73 15.57 -3.03 -0.05 -26.77 16 18 C -0.13 -5.12 6.16 71.23 0.44 -4.69 16 19 S -0.15 -8.60 20.57 -56.49 -1.16 -9.77 16 20 C -0.55 -31.42 9.50 67.95 0.65 -30.78 16 21 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 22 C 0.01 0.82 5.49 84.86 0.47 1.29 16 23 N -0.91 -56.44 13.22 21.65 0.29 -56.15 16 24 Si 1.00 43.56 29.55 68.60 2.03 45.59 16 25 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 26 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 27 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 28 C -0.11 -1.44 5.94 31.94 0.19 -1.25 16 29 H 0.06 0.28 8.14 -2.38 -0.02 0.26 16 30 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.35 4.28 7.99 -89.69 -0.72 3.56 16 37 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.05 0.36 8.01 -2.39 -0.02 0.34 16 39 H 0.08 0.91 7.74 -2.38 -0.02 0.89 16 40 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.07 1.45 8.04 -2.39 -0.02 1.43 16 42 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.42 7.15 8.54 -92.71 -0.79 6.36 16 44 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 45 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 46 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 47 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.10 0.89 7.95 -2.39 -0.02 0.87 16 Total: -1.00 -82.12 417.84 -0.23 -82.35 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -0.55 Total: 19.91 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: 6.43 Total: -14.95 kcal Atomic # 7 Polarization: -82.65 SS G_CDS: -5.34 Total: -87.99 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -1.64 Total: -35.15 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.77 kcal Total: -82.12 -0.23 -82.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734467240.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.055 kcal (2) G-P(sol) polarization free energy of solvation -82.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds