Wall clock time and date at job start Tue Mar 31 2020 22:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 120.00120 * 2 1 4 4 C 1.52992 * 109.47209 * 125.00006 * 3 2 1 5 5 C 1.53003 * 109.47476 * 180.02562 * 4 3 2 6 6 C 1.50691 * 109.47376 * 179.97438 * 5 4 3 7 7 O 1.21285 * 120.00485 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00041 * 179.72352 * 6 5 4 9 9 C 1.47067 * 136.05590 * 354.68882 * 8 6 5 10 10 C 1.53498 * 87.98495 * 207.08771 * 9 8 6 11 11 C 1.47068 * 136.06058 * 174.32165 * 8 6 5 12 12 H 1.08997 * 113.46394 * 267.69362 * 11 8 6 13 13 C 1.52998 * 113.46636 * 38.12992 * 11 8 6 14 14 N 1.46499 * 109.46955 * 185.42616 * 13 11 8 15 15 C 1.46501 * 120.00451 * 90.50486 * 14 13 11 16 16 C 1.34779 * 119.99912 * 270.50374 * 14 13 11 17 17 O 1.21287 * 120.00191 * 0.02562 * 16 14 13 18 18 C 1.50698 * 120.00181 * 179.97438 * 16 14 13 19 19 S 1.80997 * 109.47298 * 179.97438 * 18 16 14 20 20 C 1.76199 * 100.00093 * 180.02562 * 19 18 16 21 21 H 1.07995 * 120.00179 * 0.02562 * 20 19 18 22 22 C 1.38798 * 120.00139 * 180.02562 * 20 19 18 23 23 N 1.31634 * 120.00269 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 119.99892 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47131 * 90.00242 * 24 22 20 26 26 H 1.48503 * 109.47111 * 210.00085 * 24 22 20 27 27 H 1.48501 * 109.47302 * 330.00643 * 24 22 20 28 28 H 1.08004 * 119.99762 * 179.97438 * 1 2 3 29 29 H 1.07993 * 119.99979 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.00153 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.46728 * 5.00188 * 3 2 1 32 32 H 1.08996 * 109.47315 * 245.00451 * 3 2 1 33 33 H 1.09003 * 109.47331 * 59.99993 * 4 3 2 34 34 H 1.09004 * 109.47201 * 300.00095 * 4 3 2 35 35 H 1.09003 * 109.47155 * 59.99506 * 5 4 3 36 36 H 1.08996 * 109.46873 * 300.00338 * 5 4 3 37 37 H 1.09000 * 113.46508 * 321.86380 * 9 8 6 38 38 H 1.09000 * 113.46872 * 92.30105 * 9 8 6 39 39 H 1.08995 * 114.21129 * 87.52239 * 10 9 8 40 40 H 1.09001 * 114.19977 * 220.34611 * 10 9 8 41 41 H 1.08997 * 109.47379 * 305.42530 * 13 11 8 42 42 H 1.08996 * 109.46978 * 65.42389 * 13 11 8 43 43 H 1.08999 * 109.47187 * 87.09021 * 15 14 13 44 44 H 1.08994 * 109.47439 * 207.09022 * 15 14 13 45 45 H 1.09003 * 109.46799 * 327.09288 * 15 14 13 46 46 H 1.09002 * 109.47469 * 300.00352 * 18 16 14 47 47 H 1.09001 * 109.46850 * 60.00218 * 18 16 14 48 48 H 0.96995 * 120.00281 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7996 2.6584 1.1820 6 6 4.7561 2.6862 2.3461 7 8 4.8203 1.7390 3.1010 8 7 5.5445 3.7610 2.5450 9 6 5.8294 5.0127 1.8273 10 6 7.2140 5.0141 2.4900 11 6 6.4938 4.2014 3.5784 12 1 6.0377 4.8198 4.3515 13 6 7.3404 3.0637 4.1527 14 7 8.1574 3.5724 5.2571 15 6 7.6406 3.5370 6.6275 16 6 9.3846 4.0731 5.0125 17 8 9.8124 4.1029 3.8780 18 6 10.2248 4.5970 6.1485 19 16 11.8064 5.1955 5.5031 20 6 12.5642 5.7330 7.0003 21 1 12.0377 5.6336 7.9380 22 6 13.8378 6.2841 6.9746 23 7 14.4041 6.6852 8.0932 24 14 14.7487 6.4554 5.3529 25 1 14.4356 7.7742 4.7461 26 1 16.2108 6.3559 5.5934 27 1 14.3240 5.3725 4.4297 28 1 -0.5400 -0.9354 -0.0004 29 1 -0.5400 0.9352 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4027 -0.9314 33 1 3.7400 0.5065 1.0920 34 1 2.4772 1.2356 2.1130 35 1 3.0945 3.4847 1.2717 36 1 4.3573 2.7563 0.2506 37 1 5.8666 4.8933 0.7445 38 1 5.1981 5.8449 2.1387 39 1 7.9730 4.4574 1.9405 40 1 7.5510 5.9972 2.8186 41 1 6.6858 2.2730 4.5192 42 1 7.9901 2.6654 3.3735 43 1 7.8748 2.5731 7.0793 44 1 8.1025 4.3335 7.2108 45 1 6.5598 3.6780 6.6119 46 1 9.7000 5.4154 6.6414 47 1 10.4052 3.7966 6.8661 48 1 15.2940 7.0706 8.0752 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001736022721.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:13 Heat of formation + Delta-G solvation = -20.618018 kcal Electronic energy + Delta-G solvation = -26583.451319 eV Core-core repulsion = 22766.514772 eV Total energy + Delta-G solvation = -3816.936546 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.89621 -39.38415 -38.20757 -36.29366 -35.33937 -32.83948 -32.44543 -30.91333 -29.95319 -28.19259 -27.37832 -26.31431 -25.60918 -23.48197 -23.04969 -21.44262 -20.28068 -19.35268 -19.03560 -17.67261 -17.30409 -16.81549 -16.44526 -16.34222 -15.96053 -15.45628 -15.19608 -14.95044 -14.82024 -14.18305 -13.90727 -13.84473 -13.59150 -13.24233 -13.13442 -12.99486 -12.80758 -12.77546 -12.73854 -12.37074 -12.15537 -12.09021 -11.95778 -11.72668 -11.68500 -11.32000 -11.26778 -11.11374 -11.01974 -10.80468 -10.60294 -9.96051 -9.85898 -9.73311 -9.47505 -9.06084 -9.01060 -8.55811 -8.49861 -6.92554 -6.29586 -4.01317 1.86559 2.35650 2.42275 2.78730 2.93596 3.25662 3.32040 3.49522 3.60497 4.04189 4.23142 4.32125 4.34314 4.53317 4.60366 4.67625 4.76583 4.80822 4.85082 4.93007 4.98251 5.06710 5.07774 5.09586 5.12167 5.14765 5.18280 5.22752 5.35385 5.39765 5.46083 5.55853 5.61818 5.67506 5.73144 5.73779 5.78257 5.90325 5.93639 6.00843 6.09516 6.22113 6.35381 6.54126 7.43102 7.48279 7.90547 7.93408 8.40977 8.42795 9.16621 10.79667 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031207 B = 0.001836 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.019127 B =15248.850075 C =15657.778264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.151 4.151 3 C -0.095 4.095 4 C -0.100 4.100 5 C -0.134 4.134 6 C 0.539 3.461 7 O -0.539 6.539 8 N -0.644 5.644 9 C 0.097 3.903 10 C -0.140 4.140 11 C 0.117 3.883 12 H 0.093 0.907 13 C 0.115 3.885 14 N -0.620 5.620 15 C 0.078 3.922 16 C 0.532 3.468 17 O -0.514 6.514 18 C -0.122 4.122 19 S -0.142 6.142 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.057 0.943 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.553 -6.597 -14.171 30.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.169 4.169 3 C -0.133 4.133 4 C -0.138 4.138 5 C -0.174 4.174 6 C 0.330 3.670 7 O -0.416 6.416 8 N -0.381 5.381 9 C -0.026 4.026 10 C -0.178 4.178 11 C 0.013 3.987 12 H 0.111 0.889 13 C -0.009 4.009 14 N -0.356 5.356 15 C -0.065 4.065 16 C 0.319 3.681 17 O -0.388 6.388 18 C -0.272 4.272 19 S 0.084 5.916 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.127 0.873 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.123 0.877 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.076 0.924 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.115 0.885 47 H 0.114 0.886 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -25.876 -7.193 -15.383 30.951 hybrid contribution -0.101 0.280 1.020 1.062 sum -25.977 -6.914 -14.363 30.478 Atomic orbital electron populations 1.23855 0.95978 1.01823 1.01772 1.22964 0.96035 0.98597 0.99324 1.20795 0.98170 0.95530 0.98765 1.21299 0.97726 0.96155 0.98626 1.21643 0.97853 1.00564 0.97316 1.20340 0.79303 0.80759 0.86601 1.90706 1.68005 1.34447 1.48433 1.49859 1.43186 1.18779 1.26274 1.23046 0.95627 0.85555 0.98345 1.23535 0.95614 1.01838 0.96837 1.23202 0.87867 0.95191 0.92455 0.88934 1.21573 0.93663 0.95196 0.90467 1.47785 1.16394 1.63642 1.07815 1.21828 0.99653 1.02634 0.82413 1.20327 0.80633 0.76755 0.90356 1.90674 1.70781 1.54328 1.23060 1.23319 1.00350 1.03897 0.99633 1.84749 1.11101 1.80269 1.15492 1.22313 1.04719 1.47001 0.92841 0.89426 1.24708 0.96201 0.93530 0.96826 1.69938 1.15660 1.39722 1.26380 0.86737 0.79759 0.80993 0.84364 1.19233 1.19968 1.15922 0.88558 0.88658 0.87310 0.91484 0.90862 0.90900 0.91052 0.89047 0.88955 0.90212 0.89720 0.87723 0.89109 0.89212 0.89414 0.92429 0.90288 0.91465 0.88547 0.88552 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.16 14.32 29.01 0.42 -0.74 16 2 C -0.15 -0.95 9.52 -36.02 -0.34 -1.30 16 3 C -0.10 -0.54 5.66 -27.89 -0.16 -0.70 16 4 C -0.10 -0.74 4.49 -26.73 -0.12 -0.86 16 5 C -0.13 -0.93 5.53 -27.89 -0.15 -1.08 16 6 C 0.54 5.80 8.00 -10.99 -0.09 5.71 16 7 O -0.54 -7.72 15.31 5.55 0.09 -7.64 16 8 N -0.64 -6.35 3.56 -177.30 -0.63 -6.98 16 9 C 0.10 0.69 8.41 -8.51 -0.07 0.62 16 10 C -0.14 -1.41 7.35 -26.08 -0.19 -1.61 16 11 C 0.12 1.26 4.29 -72.27 -0.31 0.95 16 12 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 13 C 0.11 1.49 5.17 -4.04 -0.02 1.47 16 14 N -0.62 -8.47 2.87 -181.58 -0.52 -9.00 16 15 C 0.08 0.82 10.29 59.85 0.62 1.44 16 16 C 0.53 9.31 7.69 -10.99 -0.08 9.23 16 17 O -0.51 -10.44 14.68 5.55 0.08 -10.36 16 18 C -0.12 -2.32 4.67 36.00 0.17 -2.15 16 19 S -0.14 -3.55 18.55 -107.50 -1.99 -5.54 16 20 C -0.52 -14.85 10.04 30.94 0.31 -14.54 16 21 H 0.09 2.61 8.03 -52.49 -0.42 2.18 16 22 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 23 N -0.88 -26.38 13.97 55.49 0.78 -25.60 16 24 Si 0.86 21.56 27.74 -169.99 -4.71 16.85 16 25 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 28 H 0.10 0.49 8.06 -52.48 -0.42 0.06 16 29 H 0.10 0.49 7.84 -52.49 -0.41 0.08 16 30 H 0.11 0.66 8.06 -52.49 -0.42 0.23 16 31 H 0.07 0.34 7.79 -51.93 -0.40 -0.07 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 34 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.10 1.25 7.87 -51.93 -0.41 0.85 16 40 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.09 1.21 6.91 -51.93 -0.36 0.85 16 42 H 0.09 1.31 7.18 -51.93 -0.37 0.94 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.08 0.81 6.33 -51.93 -0.33 0.48 16 45 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 46 H 0.10 1.70 7.41 -51.92 -0.38 1.31 16 47 H 0.10 1.76 8.11 -51.91 -0.42 1.34 16 48 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 409.89 15.07 6.18 6.18 Total: -1.00 -34.63 409.89 -9.03 -43.66 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -8.16 Total: -0.69 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -0.13 Total: -0.87 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: -0.38 Total: -41.58 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.17 Total: -18.00 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.71 Total: 16.85 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.63 -9.03 -43.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001736022721.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.039 kcal (2) G-P(sol) polarization free energy of solvation -34.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds