Wall clock time and date at job start Tue Mar 31 2020 22:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.51262 * 120.84941 * 2 1 4 4 C 1.53234 * 108.53917 * 128.92764 * 3 2 1 5 5 C 1.52956 * 109.40419 * 54.62280 * 4 3 2 6 6 C 1.50706 * 109.41152 * 176.29989 * 5 4 3 7 7 O 1.21276 * 120.00086 * 120.35017 * 6 5 4 8 8 N 1.34773 * 119.99754 * 300.35511 * 6 5 4 9 9 C 1.46495 * 119.99904 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47357 * 179.97438 * 9 8 6 11 11 N 1.46498 * 109.47443 * 179.97438 * 10 9 8 12 12 C 1.46501 * 119.99853 * 90.00239 * 11 10 9 13 13 C 1.34768 * 120.00498 * 270.00063 * 11 10 9 14 14 O 1.21290 * 120.00098 * 0.02562 * 13 11 10 15 15 C 1.50703 * 120.00564 * 179.97438 * 13 11 10 16 16 S 1.80999 * 109.47563 * 180.02562 * 15 13 11 17 17 C 1.76197 * 99.99925 * 179.97438 * 16 15 13 18 18 H 1.07993 * 119.99990 * 359.97438 * 17 16 15 19 19 C 1.38804 * 119.99607 * 179.97438 * 17 16 15 20 20 N 1.31629 * 119.99847 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00116 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47148 * 89.99988 * 21 19 17 23 23 H 1.48499 * 109.46934 * 209.99886 * 21 19 17 24 24 H 1.48502 * 109.46988 * 329.99587 * 21 19 17 25 25 C 1.52960 * 109.81835 * 296.40343 * 5 4 3 26 26 C 1.51276 * 120.84804 * 180.27541 * 2 1 3 27 27 H 1.08005 * 119.99835 * 179.72030 * 1 2 3 28 28 H 1.07992 * 119.99731 * 359.72145 * 1 2 3 29 29 H 1.09007 * 109.62335 * 248.63908 * 3 2 1 30 30 H 1.08996 * 109.62750 * 9.20445 * 3 2 1 31 31 H 1.09002 * 109.47375 * 294.64440 * 4 3 2 32 32 H 1.08999 * 109.48358 * 174.60290 * 4 3 2 33 33 H 1.09002 * 109.41534 * 56.51334 * 5 4 3 34 34 H 0.96998 * 120.00428 * 359.97438 * 8 6 5 35 35 H 1.09006 * 109.47196 * 299.99672 * 9 8 6 36 36 H 1.09004 * 109.47664 * 59.99654 * 9 8 6 37 37 H 1.08997 * 109.47147 * 299.99981 * 10 9 8 38 38 H 1.09004 * 109.47197 * 59.99551 * 10 9 8 39 39 H 1.08995 * 109.47200 * 89.99966 * 12 11 10 40 40 H 1.08999 * 109.47489 * 210.00522 * 12 11 10 41 41 H 1.09009 * 109.46910 * 330.00100 * 12 11 10 42 42 H 1.09004 * 109.46746 * 300.00546 * 15 13 11 43 43 H 1.08995 * 109.46889 * 59.99960 * 15 13 11 44 44 H 0.97002 * 120.00118 * 180.02562 * 20 19 17 45 45 H 1.09005 * 109.48090 * 303.61775 * 25 5 4 46 46 H 1.08998 * 109.49622 * 183.58621 * 25 5 4 47 47 H 1.09001 * 109.62477 * 350.79006 * 26 2 1 48 48 H 1.08996 * 109.62421 * 111.17059 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0857 1.2986 0.0000 4 6 3.1192 1.2488 1.1302 5 6 3.9848 -0.0024 0.9725 6 6 5.0588 -0.0050 2.0297 7 8 5.1245 -0.9180 2.8252 8 7 5.9462 1.0075 2.0911 9 6 6.9906 1.0048 3.1184 10 6 7.8577 2.2563 2.9677 11 7 8.9017 2.2539 3.9954 12 6 10.1958 1.6233 3.7234 13 6 8.6718 2.8318 5.1909 14 8 7.6004 3.3536 5.4164 15 6 9.7456 2.8288 6.2484 16 16 9.1371 3.6739 7.7287 17 6 10.5517 3.5260 8.7687 18 1 11.4367 3.0230 8.4082 19 6 10.5284 4.0559 10.0514 20 7 11.5850 3.9449 10.8286 21 14 8.9973 4.9253 10.6753 22 1 8.1023 3.9401 11.3339 23 1 9.3865 5.9721 11.6540 24 1 8.2858 5.5548 9.5339 25 6 3.1191 -1.2543 1.1242 26 6 2.0857 -1.2987 -0.0062 27 1 -0.5400 -0.9354 -0.0046 28 1 -0.5399 0.9352 0.0045 29 1 2.5945 1.4211 -0.9562 30 1 1.4034 2.1326 0.1642 31 1 2.6057 1.2169 2.0911 32 1 3.7509 2.1359 1.0846 33 1 4.4488 -0.0001 -0.0138 34 1 5.8939 1.7377 1.4547 35 1 6.5290 0.9990 4.1059 36 1 7.6120 0.1167 3.0027 37 1 8.3193 2.2617 1.9803 38 1 7.2366 3.1447 3.0832 39 1 10.8754 2.3591 3.2936 40 1 10.6159 1.2401 4.6533 41 1 10.0588 0.8012 3.0207 42 1 10.0061 1.8004 6.4987 43 1 10.6281 3.3457 5.8714 44 1 11.5687 4.3149 11.7251 45 1 2.6057 -1.2270 2.0854 46 1 3.7506 -2.1414 1.0745 47 1 1.4034 -2.1335 0.1541 48 1 2.5918 -1.4183 -0.9642 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737773216.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:30 Heat of formation + Delta-G solvation = -72.589281 kcal Electronic energy + Delta-G solvation = -26445.404371 eV Core-core repulsion = 22626.214181 eV Total energy + Delta-G solvation = -3819.190190 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.53188 -39.64971 -38.19532 -36.08370 -34.70473 -33.29990 -32.44779 -31.54209 -30.72915 -28.60214 -27.20791 -26.30312 -25.61201 -23.51649 -23.27371 -22.10048 -20.50360 -19.32700 -18.83545 -17.73729 -17.51124 -16.86226 -16.54417 -15.78833 -15.54822 -15.46373 -15.28163 -14.95611 -14.90344 -14.42974 -14.19342 -13.94003 -13.83540 -13.50477 -13.32230 -13.17632 -12.89316 -12.79758 -12.76779 -12.45106 -12.44503 -12.07254 -11.94958 -11.81326 -11.57621 -11.46985 -11.26547 -11.02917 -11.01472 -10.61932 -10.61582 -10.04179 -9.86834 -9.57346 -9.42995 -9.31597 -9.01220 -8.77098 -8.51068 -6.93603 -6.29801 -4.01839 1.84346 2.40062 2.49975 2.81934 2.94358 3.28722 3.33463 3.49779 3.58836 4.11658 4.24412 4.32151 4.36641 4.51596 4.56932 4.63726 4.68521 4.77832 4.81980 4.92483 4.96391 5.00617 5.09288 5.10080 5.14482 5.20087 5.27713 5.31142 5.35185 5.45666 5.50037 5.59559 5.62496 5.65986 5.67747 5.72894 5.76141 5.81894 5.91555 5.97863 6.09788 6.24446 6.44880 6.46134 7.19918 7.30672 7.93142 7.97965 8.33741 8.40499 9.16355 10.79338 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019110 B = 0.001883 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.855367 B =14862.427543 C =15611.532453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.123 4.123 3 C -0.084 4.084 4 C -0.109 4.109 5 C -0.104 4.104 6 C 0.516 3.484 7 O -0.535 6.535 8 N -0.727 5.727 9 C 0.102 3.898 10 C 0.109 3.891 11 N -0.621 5.621 12 C 0.078 3.922 13 C 0.532 3.468 14 O -0.514 6.514 15 C -0.121 4.121 16 S -0.143 6.143 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.880 5.880 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.097 4.097 26 C -0.086 4.086 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.400 0.600 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.271 0.729 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.469 -7.542 -28.215 32.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.123 4.123 3 C -0.121 4.121 4 C -0.147 4.147 5 C -0.126 4.126 6 C 0.302 3.698 7 O -0.411 6.411 8 N -0.380 5.380 9 C -0.023 4.023 10 C -0.015 4.015 11 N -0.357 5.357 12 C -0.065 4.065 13 C 0.320 3.680 14 O -0.388 6.388 15 C -0.272 4.272 16 S 0.083 5.917 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.516 5.516 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.135 4.135 26 C -0.123 4.123 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.116 0.884 34 H 0.234 0.766 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.081 0.919 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.091 0.909 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.881 -7.391 -27.092 32.262 hybrid contribution 0.912 0.056 -0.061 0.916 sum -14.969 -7.335 -27.154 31.862 Atomic orbital electron populations 1.23656 0.95018 1.01913 1.02723 1.21983 0.95123 0.95821 0.99340 1.20806 0.97466 0.95088 0.98755 1.21564 0.97181 0.96038 0.99889 1.21332 0.94837 0.97934 0.98472 1.20673 0.81998 0.81614 0.85520 1.90729 1.73083 1.35651 1.41647 1.45871 1.31927 1.25324 1.34888 1.21761 0.89356 0.98713 0.92462 1.21447 0.90378 0.98331 0.91350 1.47702 1.14899 1.58752 1.14360 1.21852 0.84228 0.97662 1.02794 1.20394 0.88759 0.76967 0.81907 1.90705 1.25822 1.43631 1.78628 1.23314 1.00154 1.05519 0.98174 1.84802 1.24522 1.73779 1.08571 1.22299 0.99930 1.43752 1.00905 0.89367 1.24710 0.96446 0.94680 0.95439 1.69936 1.28721 1.44195 1.08758 0.86738 0.83473 0.80660 0.81004 1.19184 1.19927 1.15946 1.21359 0.96521 0.96449 0.99123 1.20841 0.97584 0.94902 0.98995 0.88451 0.88452 0.90637 0.90809 0.90922 0.91033 0.88427 0.76619 0.90664 0.91349 0.90140 0.89169 0.92292 0.90281 0.91180 0.88386 0.88378 0.91929 0.90965 0.90751 0.90929 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.21 13.99 29.01 0.41 -0.80 16 2 C -0.12 -0.78 5.35 -100.51 -0.54 -1.32 16 3 C -0.08 -0.45 6.03 -27.49 -0.17 -0.61 16 4 C -0.11 -0.68 5.14 -26.63 -0.14 -0.81 16 5 C -0.10 -0.74 2.42 -91.81 -0.22 -0.96 16 6 C 0.52 5.43 7.15 -10.98 -0.08 5.35 16 7 O -0.54 -8.12 15.94 5.56 0.09 -8.03 16 8 N -0.73 -6.32 5.42 -60.29 -0.33 -6.65 16 9 C 0.10 1.12 6.00 -4.05 -0.02 1.09 16 10 C 0.11 1.08 5.52 -4.04 -0.02 1.06 16 11 N -0.62 -7.78 2.87 -181.57 -0.52 -8.30 16 12 C 0.08 0.71 10.24 59.85 0.61 1.32 16 13 C 0.53 9.34 7.69 -10.99 -0.08 9.26 16 14 O -0.51 -10.85 15.44 5.55 0.09 -10.76 16 15 C -0.12 -2.33 4.71 36.01 0.17 -2.16 16 16 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 17 C -0.52 -14.98 10.04 30.94 0.31 -14.67 16 18 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 19 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 20 N -0.88 -26.49 13.97 55.49 0.78 -25.72 16 21 Si 0.86 21.83 27.74 -169.99 -4.72 17.11 16 22 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 25 C -0.10 -0.76 4.54 -26.63 -0.12 -0.88 16 26 C -0.09 -0.52 6.03 -27.48 -0.17 -0.69 16 27 H 0.10 0.54 7.92 -52.48 -0.42 0.13 16 28 H 0.10 0.53 7.92 -52.49 -0.42 0.12 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.37 7.89 -51.93 -0.41 -0.04 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.35 7.44 -51.93 -0.39 -0.04 16 33 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.40 2.17 7.82 -40.82 -0.32 1.85 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 38 H 0.09 1.01 7.42 -51.93 -0.39 0.62 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.76 6.44 -51.93 -0.33 0.43 16 41 H 0.07 0.48 8.07 -51.92 -0.42 0.06 16 42 H 0.10 1.76 7.40 -51.91 -0.38 1.38 16 43 H 0.10 1.74 8.11 -51.92 -0.42 1.32 16 44 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.07 0.64 8.00 -51.93 -0.42 0.22 16 47 H 0.07 0.42 7.89 -51.93 -0.41 0.01 16 48 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 403.11 15.07 6.07 6.07 Total: -1.00 -36.41 403.11 -8.78 -45.19 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -8.09 Total: -1.20 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -0.16 Total: -2.10 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: -0.07 Total: -40.67 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: 0.17 Total: -18.79 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.72 Total: 17.11 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.41 -8.78 -45.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737773216.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.396 kcal (2) G-P(sol) polarization free energy of solvation -36.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds