Wall clock time and date at job start Tue Mar 31 2020 22:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46493 * 120.00177 * 2 1 4 4 C 1.53005 * 109.47108 * 90.00078 * 3 2 1 5 5 N 1.46493 * 109.47108 * 179.97438 * 4 3 2 6 6 C 1.46496 * 120.00111 * 269.99490 * 5 4 3 7 7 C 1.34775 * 120.00121 * 90.00241 * 5 4 3 8 8 O 1.21281 * 120.00159 * 359.97438 * 7 5 4 9 9 C 1.50700 * 120.00173 * 179.97438 * 7 5 4 10 10 H 1.09004 * 115.57717 * 325.76344 * 9 7 5 11 11 C 1.53126 * 117.51594 * 111.53572 * 9 7 5 12 12 C 1.52458 * 59.85864 * 107.44783 * 11 9 7 13 13 C 1.53252 * 128.58239 * 117.59980 * 12 11 9 14 14 C 1.53896 * 86.88250 * 114.94794 * 13 12 11 15 15 C 1.53254 * 128.58544 * 242.40323 * 12 11 9 16 16 C 1.34786 * 119.99602 * 179.97438 * 2 1 3 17 17 O 1.21278 * 119.99582 * 179.97438 * 16 2 1 18 18 C 1.50696 * 119.99935 * 0.02562 * 16 2 1 19 19 S 1.81006 * 109.46918 * 179.97438 * 18 16 2 20 20 C 1.76195 * 100.00004 * 180.02562 * 19 18 16 21 21 H 1.08006 * 120.00267 * 359.97438 * 20 19 18 22 22 C 1.38803 * 120.00204 * 179.97438 * 20 19 18 23 23 N 1.31629 * 120.00227 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99759 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.46793 * 89.99646 * 24 22 20 26 26 H 1.48489 * 109.47301 * 209.99690 * 24 22 20 27 27 H 1.48501 * 109.46955 * 330.00170 * 24 22 20 28 28 H 1.09006 * 109.46939 * 89.99640 * 1 2 3 29 29 H 1.09004 * 109.47807 * 209.99874 * 1 2 3 30 30 H 1.08997 * 109.47203 * 329.99951 * 1 2 3 31 31 H 1.08995 * 109.47132 * 329.99995 * 3 2 1 32 32 H 1.08999 * 109.47474 * 209.99490 * 3 2 1 33 33 H 1.08999 * 109.47564 * 59.99645 * 4 3 2 34 34 H 1.09005 * 109.46808 * 300.00265 * 4 3 2 35 35 H 1.08998 * 109.47599 * 270.00459 * 6 5 4 36 36 H 1.08997 * 109.47073 * 30.00391 * 6 5 4 37 37 H 1.08999 * 109.47218 * 149.99954 * 6 5 4 38 38 H 1.08997 * 117.51115 * 214.89756 * 11 9 7 39 39 H 1.09005 * 117.51169 * 359.97438 * 11 9 7 40 40 H 1.08999 * 113.64554 * 229.44027 * 13 12 11 41 41 H 1.08995 * 113.65194 * 0.45093 * 13 12 11 42 42 H 1.09002 * 113.58503 * 270.39662 * 14 13 12 43 43 H 1.08994 * 113.66356 * 139.58399 * 14 13 12 44 44 H 1.08997 * 113.64624 * 359.54817 * 15 12 11 45 45 H 1.08998 * 113.65417 * 130.46701 * 15 12 11 46 46 H 1.08995 * 109.47276 * 299.99754 * 18 16 2 47 47 H 1.08997 * 109.47250 * 60.00429 * 18 16 2 48 48 H 0.97000 * 119.99912 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7103 1.4425 5 7 3.1856 2.9787 1.4425 6 6 4.6505 2.9780 1.4428 7 6 2.5122 4.1462 1.4424 8 8 1.2994 4.1468 1.4419 9 6 3.2663 5.4509 1.4430 10 1 4.2053 5.4515 1.9966 11 6 3.1893 6.3131 0.1799 12 6 2.4480 6.7374 1.4428 13 6 2.6487 7.9980 2.2909 14 6 1.2270 8.4075 1.8674 15 6 0.9399 6.9108 1.6532 16 6 2.1388 -1.1673 0.0005 17 8 3.3516 -1.1673 0.0001 18 6 1.3852 -2.4723 0.0005 19 16 2.5614 -3.8482 0.0005 20 6 1.4413 -5.2082 -0.0003 21 1 0.3760 -5.0305 -0.0001 22 6 1.9279 -6.5082 -0.0010 23 7 1.0911 -7.5242 -0.0011 24 14 3.7705 -6.8156 -0.0005 25 1 4.2581 -6.8980 1.3998 26 1 4.0595 -8.0925 -0.7012 27 1 4.4586 -5.7006 -0.6994 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3635 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 1.6085 2.0283 -0.5138 32 1 3.1499 1.1383 -0.5137 33 1 3.0415 0.9507 1.9565 34 1 1.5000 1.8406 1.9564 35 1 5.0137 2.9779 2.4705 36 1 5.0135 2.0879 0.9291 37 1 5.0144 3.8678 0.9290 38 1 4.0776 6.8807 -0.0972 39 1 2.5935 5.9362 -0.6515 40 1 2.7461 7.7962 3.3576 41 1 3.4260 8.6611 1.9113 42 1 1.1973 8.9932 0.9486 43 1 0.6422 8.8530 2.6720 44 1 0.3474 6.7026 0.7624 45 1 0.5613 6.4053 2.5415 46 1 0.7583 -2.5299 0.8902 47 1 0.7590 -2.5303 -0.8897 48 1 1.4313 -8.4326 -0.0012 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738349293.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:55 Heat of formation + Delta-G solvation = -13.955940 kcal Electronic energy + Delta-G solvation = -26893.954091 eV Core-core repulsion = 23077.306434 eV Total energy + Delta-G solvation = -3816.647657 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.82703 -39.66359 -38.80110 -36.16631 -35.18690 -34.06612 -32.44496 -31.11204 -28.75666 -27.10865 -26.51540 -26.02504 -25.63912 -24.65237 -23.46198 -22.55495 -19.53713 -19.31001 -18.53142 -17.75609 -17.48775 -16.77405 -16.56230 -16.07003 -15.69825 -15.57222 -15.24371 -15.09685 -14.90484 -14.39660 -13.86322 -13.56890 -13.40194 -13.27960 -13.04000 -12.99006 -12.79166 -12.70435 -12.65615 -12.51900 -12.33325 -12.31980 -11.98010 -11.92267 -11.80397 -11.27622 -11.10436 -11.01857 -10.72385 -10.59980 -10.47614 -10.14310 -9.93967 -9.86118 -9.52787 -9.21858 -9.01087 -8.51166 -8.48533 -6.92999 -6.29468 -4.01355 2.19283 2.47293 2.80547 2.91866 3.26346 3.32357 3.35996 3.49293 3.60090 3.89107 4.21795 4.28712 4.32138 4.40388 4.49240 4.55423 4.61425 4.84388 4.87033 4.92185 4.99334 5.09023 5.09990 5.15020 5.20555 5.21672 5.25289 5.32239 5.34555 5.44348 5.44818 5.45365 5.51102 5.52892 5.62179 5.69704 5.76960 5.79422 5.87692 5.93642 6.01062 6.05452 6.13773 6.55896 7.08621 7.41015 7.91916 7.93525 8.39166 8.41254 9.16620 10.79725 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031993 B = 0.001914 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.989824 B =14624.539010 C =15198.627144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.620 5.620 3 C 0.107 3.893 4 C 0.101 3.899 5 N -0.611 5.611 6 C 0.076 3.924 7 C 0.544 3.456 8 O -0.533 6.533 9 C -0.180 4.180 10 H 0.123 0.877 11 C -0.120 4.120 12 C -0.127 4.127 13 C -0.099 4.099 14 C -0.143 4.143 15 C -0.082 4.082 16 C 0.532 3.468 17 O -0.519 6.519 18 C -0.121 4.121 19 S -0.144 6.144 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.087 0.913 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.159 31.995 2.904 32.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.356 5.356 3 C -0.017 4.017 4 C -0.023 4.023 5 N -0.344 5.344 6 C -0.067 4.067 7 C 0.332 3.668 8 O -0.410 6.410 9 C -0.201 4.201 10 H 0.141 0.859 11 C -0.158 4.158 12 C -0.127 4.127 13 C -0.136 4.136 14 C -0.180 4.180 15 C -0.119 4.119 16 C 0.320 3.680 17 O -0.394 6.394 18 C -0.271 4.271 19 S 0.083 5.917 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.106 0.894 46 H 0.116 0.884 47 H 0.116 0.884 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.270 31.773 2.902 32.190 hybrid contribution -0.613 -0.624 0.056 0.877 sum 3.656 31.150 2.958 31.503 Atomic orbital electron populations 1.21846 0.79109 1.03496 1.02107 1.47766 1.07136 1.05300 1.75397 1.21665 0.98232 0.85040 0.96772 1.21877 0.98146 0.84385 0.97889 1.47726 1.07333 1.05666 1.73685 1.21878 0.78988 1.03751 1.02108 1.19705 0.87357 0.84148 0.75615 1.90685 1.13683 1.87166 1.49451 1.22177 1.02248 0.90290 1.05409 0.85905 1.22795 1.02152 1.00262 0.90567 1.22319 0.96657 0.93512 1.00259 1.22508 0.97712 0.94162 0.99217 1.22817 0.96576 0.96999 1.01599 1.22322 0.92472 0.94556 1.02595 1.20362 0.87935 0.84664 0.75089 1.90675 1.13683 1.86873 1.48120 1.23313 1.03083 0.95052 1.05698 1.84753 1.12012 0.97556 1.97425 1.22310 0.94879 0.90880 1.58789 0.89379 1.24715 0.98529 0.94873 0.93192 1.69938 1.34783 0.98873 1.48045 0.86731 0.85384 0.79808 0.79902 1.19227 1.19948 1.15945 0.92461 0.90419 0.90964 0.90562 0.89789 0.89804 0.89690 0.92423 0.90248 0.90760 0.87556 0.88015 0.89608 0.91225 0.90135 0.91209 0.91252 0.89425 0.88449 0.88445 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 10.24 59.85 0.61 1.46 16 2 N -0.62 -8.59 2.87 -181.57 -0.52 -9.11 16 3 C 0.11 1.33 5.73 -4.04 -0.02 1.30 16 4 C 0.10 1.17 5.73 -4.04 -0.02 1.15 16 5 N -0.61 -6.13 2.87 -181.58 -0.52 -6.65 16 6 C 0.08 0.55 10.01 59.84 0.60 1.15 16 7 C 0.54 5.85 7.46 -10.99 -0.08 5.76 16 8 O -0.53 -7.30 14.72 5.56 0.08 -7.22 16 9 C -0.18 -1.41 4.80 -91.98 -0.44 -1.85 16 10 H 0.12 0.75 7.26 -51.93 -0.38 0.37 16 11 C -0.12 -0.80 10.24 -26.94 -0.28 -1.08 16 12 C -0.13 -0.97 2.87 -154.80 -0.45 -1.41 16 13 C -0.10 -0.59 8.10 -26.13 -0.21 -0.80 16 14 C -0.14 -0.88 8.08 -25.80 -0.21 -1.09 16 15 C -0.08 -0.69 6.47 -26.13 -0.17 -0.86 16 16 C 0.53 9.56 7.69 -10.98 -0.08 9.47 16 17 O -0.52 -10.91 15.44 5.56 0.09 -10.83 16 18 C -0.12 -2.36 4.71 36.00 0.17 -2.19 16 19 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 20 C -0.52 -14.99 10.04 30.94 0.31 -14.68 16 21 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 22 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 23 N -0.88 -26.50 13.97 55.49 0.78 -25.73 16 24 Si 0.86 21.72 27.74 -169.99 -4.72 17.01 16 25 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.83 6.44 -51.93 -0.33 0.50 16 30 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16 31 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 32 H 0.08 1.13 7.42 -51.93 -0.39 0.74 16 33 H 0.08 1.05 8.07 -51.93 -0.42 0.63 16 34 H 0.08 1.06 7.42 -51.93 -0.39 0.67 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 37 H 0.07 0.40 6.64 -51.93 -0.34 0.05 16 38 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.09 0.85 8.05 -51.93 -0.42 0.43 16 46 H 0.10 1.77 7.40 -51.92 -0.38 1.39 16 47 H 0.10 1.79 8.11 -51.92 -0.42 1.37 16 48 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 405.43 15.07 6.11 6.11 Total: -1.00 -34.74 405.43 -9.18 -43.92 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -8.11 Total: -0.91 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -0.37 Total: -0.96 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: -0.27 Total: -41.49 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: 0.17 Total: -18.04 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.72 Total: 17.01 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.74 -9.18 -43.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738349293.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.964 kcal (2) G-P(sol) polarization free energy of solvation -34.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds