Wall clock time and date at job start Tue Mar 31 2020 23:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35958 * 116.99813 * 2 1 4 4 C 1.38655 * 120.06410 * 359.97438 * 3 2 1 5 5 C 1.38177 * 119.97092 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.09453 * 359.97438 * 5 4 3 7 7 C 1.38251 * 120.12749 * 0.02562 * 6 5 4 8 8 C 1.50693 * 119.98622 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.47245 * 264.99721 * 8 7 6 10 10 C 1.50703 * 109.46864 * 180.02562 * 9 8 7 11 11 O 1.21281 * 120.00343 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99496 * 180.02562 * 10 9 8 13 13 C 1.46503 * 119.99611 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46978 * 179.97438 * 13 12 10 15 15 H 1.09003 * 109.47092 * 305.00045 * 14 13 12 16 16 O 1.42896 * 109.47376 * 64.99976 * 14 13 12 17 17 C 1.52999 * 109.47427 * 184.99969 * 14 13 12 18 18 N 1.46493 * 109.47808 * 179.97438 * 17 14 13 19 19 C 1.36936 * 120.00425 * 180.02562 * 18 17 14 20 20 H 1.07999 * 119.99981 * 0.02562 * 19 18 17 21 21 C 1.38810 * 119.99741 * 180.02562 * 19 18 17 22 22 N 1.31615 * 120.00634 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99865 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47053 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47324 * 119.99945 * 23 21 19 26 26 H 1.48494 * 109.47065 * 240.00047 * 23 21 19 27 27 C 1.38338 * 120.03013 * 359.97438 * 7 6 5 28 28 F 1.35100 * 120.04992 * 180.28191 * 27 7 6 29 29 H 1.09003 * 109.47092 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47200 * 300.00040 * 1 2 3 31 31 H 1.08998 * 109.47460 * 60.00264 * 1 2 3 32 32 H 1.08005 * 120.01507 * 0.02562 * 4 3 2 33 33 H 1.07999 * 119.95506 * 180.02562 * 5 4 3 34 34 H 1.08000 * 119.93539 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.47058 * 25.00266 * 8 7 6 36 36 H 1.09007 * 109.46913 * 144.99613 * 8 7 6 37 37 H 1.08999 * 109.47088 * 300.00072 * 9 8 7 38 38 H 1.08994 * 109.47014 * 59.99952 * 9 8 7 39 39 H 0.96996 * 120.00399 * 359.97438 * 12 10 9 40 40 H 1.08999 * 109.47222 * 299.99832 * 13 12 10 41 41 H 1.09002 * 109.47197 * 60.00305 * 13 12 10 42 42 H 0.96700 * 114.00140 * 59.99624 * 16 14 13 43 43 H 1.08995 * 109.47248 * 300.00358 * 17 14 13 44 44 H 1.09007 * 109.46996 * 59.99763 * 17 14 13 45 45 H 0.97010 * 119.99578 * 0.02562 * 18 17 14 46 46 H 0.96997 * 120.00530 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 1.2922 2.3751 -0.0005 5 6 1.9215 3.6053 -0.0011 6 6 3.3023 3.6777 -0.0005 7 6 4.0579 2.5199 0.0000 8 6 5.5625 2.6026 0.0000 9 6 6.0787 2.5043 -1.4369 10 6 7.5835 2.5864 -1.4368 11 8 8.1840 2.7107 -0.3904 12 7 8.2620 2.5216 -2.5996 13 6 9.7249 2.6008 -2.5994 14 6 10.2411 2.5027 -4.0363 15 1 9.8550 1.5948 -4.4999 16 8 9.8009 3.6411 -4.7794 17 6 11.7704 2.4599 -4.0271 18 7 12.2647 2.3653 -5.4029 19 6 13.6116 2.3124 -5.6445 20 1 14.3094 2.3401 -4.8207 21 6 14.0798 2.2233 -6.9482 22 7 13.2294 2.1891 -7.9521 23 14 15.9171 2.1505 -7.2778 24 1 16.6537 2.2041 -5.9894 25 1 16.2438 0.8852 -7.9830 26 1 16.3146 3.3050 -8.1229 27 6 3.4333 1.2856 0.0005 28 9 4.1713 0.1540 0.0068 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 0.2136 2.3200 -0.0005 33 1 1.3340 4.5115 -0.0011 34 1 3.7914 4.6406 -0.0014 35 1 5.8742 3.5527 0.4339 36 1 5.9715 1.7822 0.5899 37 1 5.7671 1.5542 -1.8708 38 1 5.6698 3.3246 -2.0267 39 1 7.7818 2.4218 -3.4364 40 1 10.0373 3.5503 -2.1648 41 1 10.1331 1.7796 -2.0102 42 1 10.1078 4.4860 -4.4231 43 1 12.1565 3.3676 -3.5636 44 1 12.1062 1.5914 -3.4603 45 1 11.6379 2.3401 -6.1428 46 1 13.5566 2.1273 -8.8631 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753912876.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:13 Heat of formation + Delta-G solvation = -142.392160 kcal Electronic energy + Delta-G solvation = -28086.233921 eV Core-core repulsion = 23697.803675 eV Total energy + Delta-G solvation = -4388.430246 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.08184 -40.50910 -39.83636 -38.22589 -37.60202 -34.43143 -34.11584 -33.97419 -31.33814 -30.76520 -30.27133 -28.90126 -27.81899 -25.87754 -24.44528 -23.02115 -22.56055 -21.54366 -21.40735 -20.20441 -18.54458 -17.55360 -17.46139 -17.28111 -17.10143 -16.56291 -16.39619 -16.09032 -15.50446 -15.39928 -15.18338 -15.06537 -14.91820 -14.47631 -14.31793 -13.81240 -13.60678 -13.53915 -13.18716 -13.01695 -12.96853 -12.62248 -12.52469 -12.39103 -12.28203 -12.02096 -11.83586 -11.55368 -11.48463 -11.30155 -10.96017 -10.83844 -10.62240 -10.15072 -10.05574 -9.80892 -9.50273 -9.17450 -9.09867 -8.91095 -8.66543 -6.94115 -5.76555 -3.06245 0.63102 0.79509 2.58452 2.63135 3.00344 3.19463 3.43350 3.48975 3.51275 3.82175 4.16496 4.29171 4.52902 4.54094 4.58053 4.62077 4.66354 4.71359 4.73416 4.75751 4.85699 4.96147 4.96928 5.06756 5.25580 5.29621 5.41569 5.54369 5.55644 5.61620 5.63710 5.81536 5.81871 5.82324 5.95631 5.98085 6.17293 6.19823 6.40070 6.50998 6.67385 6.79359 7.45572 7.68839 7.93881 8.17156 8.41583 9.53417 10.10047 10.45962 11.45819 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026243 B = 0.001540 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.711314 B =18177.344215 C =18428.189367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.310 6.310 3 C 0.096 3.904 4 C -0.188 4.188 5 C -0.087 4.087 6 C -0.125 4.125 7 C -0.077 4.077 8 C -0.065 4.065 9 C -0.136 4.136 10 C 0.512 3.488 11 O -0.545 6.545 12 N -0.722 5.722 13 C 0.089 3.911 14 C 0.089 3.911 15 H 0.104 0.896 16 O -0.552 6.552 17 C 0.126 3.874 18 N -0.726 5.726 19 C -0.244 4.244 20 H 0.071 0.929 21 C -0.012 4.012 22 N -0.930 5.930 23 Si 0.908 3.092 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.071 3.929 28 F -0.128 7.128 29 H 0.103 0.897 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.405 0.595 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.373 0.627 43 H 0.023 0.977 44 H 0.029 0.971 45 H 0.389 0.611 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.396 1.787 17.883 35.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.050 3.950 4 C -0.207 4.207 5 C -0.105 4.105 6 C -0.143 4.143 7 C -0.078 4.078 8 C -0.102 4.102 9 C -0.176 4.176 10 C 0.298 3.702 11 O -0.423 6.423 12 N -0.373 5.373 13 C -0.035 4.035 14 C 0.029 3.971 15 H 0.122 0.878 16 O -0.357 6.357 17 C -0.002 4.002 18 N -0.371 5.371 19 C -0.375 4.375 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.578 5.578 23 Si 0.739 3.261 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.052 3.948 28 F -0.107 7.107 29 H 0.121 0.879 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.154 0.846 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.240 0.760 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.220 0.780 43 H 0.041 0.959 44 H 0.046 0.954 45 H 0.223 0.777 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -29.941 1.160 18.291 35.106 hybrid contribution 0.681 0.166 -0.573 0.905 sum -29.260 1.325 17.718 34.232 Atomic orbital electron populations 1.23127 0.77817 1.04408 1.01490 1.86153 1.21797 1.25770 1.88629 1.19016 0.90775 0.85723 0.99513 1.21145 1.00297 0.91563 1.07656 1.21011 0.94555 0.97235 0.97719 1.20934 0.93501 0.97760 1.02089 1.19840 0.96875 0.90938 1.00130 1.20288 0.88353 1.05298 0.96291 1.21626 0.92294 1.04954 0.98681 1.20580 0.89854 0.76076 0.83666 1.90709 1.70737 1.49393 1.31434 1.45960 1.07719 1.74379 1.09279 1.22108 0.79755 1.03002 0.98637 1.22388 0.95473 0.90214 0.89021 0.87811 1.86573 1.76566 1.16267 1.56307 1.21196 0.90298 0.98828 0.89924 1.42236 1.04917 1.88935 1.00971 1.19273 0.83337 1.42814 0.92053 0.91143 1.24759 0.97713 1.02822 0.95562 1.69685 1.32599 1.57235 0.98269 0.86110 0.85054 0.77217 0.77753 1.20539 1.21823 1.21829 1.16836 0.85831 0.82811 1.09366 1.91511 1.76321 1.48722 1.94117 0.87860 0.92428 0.92352 0.84571 0.84919 0.84585 0.89176 0.89482 0.88645 0.88430 0.75992 0.91076 0.90467 0.77953 0.95943 0.95368 0.77653 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.78 10.36 -19.61 -0.20 -2.99 16 3 C 0.10 0.86 6.69 -39.18 -0.26 0.60 16 4 C -0.19 -1.19 9.04 -39.45 -0.36 -1.55 16 5 C -0.09 -0.49 10.04 -39.59 -0.40 -0.89 16 6 C -0.12 -0.82 9.68 -39.57 -0.38 -1.20 16 7 C -0.08 -0.66 5.14 -104.58 -0.54 -1.19 16 8 C -0.06 -0.59 4.41 -27.89 -0.12 -0.71 16 9 C -0.14 -1.18 5.68 -27.88 -0.16 -1.34 16 10 C 0.51 6.18 7.83 -10.98 -0.09 6.09 16 11 O -0.55 -8.59 15.98 5.56 0.09 -8.50 16 12 N -0.72 -8.26 5.50 -60.29 -0.33 -8.59 16 13 C 0.09 1.17 5.31 -4.04 -0.02 1.15 16 14 C 0.09 1.36 3.09 -26.73 -0.08 1.28 16 15 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 16 O -0.55 -8.69 13.03 -35.23 -0.46 -9.14 16 17 C 0.13 2.45 5.92 -4.05 -0.02 2.43 16 18 N -0.73 -18.40 5.49 -59.91 -0.33 -18.73 16 19 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 20 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 23 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 C 0.07 0.72 7.25 -39.29 -0.28 0.44 16 28 F -0.13 -1.54 16.41 2.25 0.04 -1.50 16 29 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.17 7.66 -51.93 -0.40 -0.23 16 31 H 0.06 0.18 7.66 -51.93 -0.40 -0.22 16 32 H 0.14 0.52 6.30 -52.48 -0.33 0.19 16 33 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 34 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 35 H 0.09 0.79 8.01 -51.93 -0.42 0.37 16 36 H 0.09 0.93 7.74 -51.92 -0.40 0.53 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.41 3.98 8.47 -40.82 -0.35 3.64 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.37 4.91 9.05 45.56 0.41 5.33 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.39 10.56 7.54 -40.82 -0.31 10.25 16 46 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 395.92 15.07 5.97 5.97 Total: -1.00 -35.80 395.92 -7.46 -43.26 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -5.96 Total: 11.70 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -1.97 Total: -1.28 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 0.06 Total: -55.01 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.57 Total: -20.63 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.80 -7.46 -43.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753912876.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.128 kcal (2) G-P(sol) polarization free energy of solvation -35.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds